mRNA_P-fluviatile_contig1.215.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.215.1
Unique NamemRNA_P-fluviatile_contig1.215.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.215.1 vs. uniprot
Match: D7G068_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G068_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 4.100e-6
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = -1 
Query:  156 PNWKRNTGLAFVGIGVAVIAIARLSGFEKHILVS*TMGLAFGLGRRWCR 302
            P+WKRNTG AFVGIG+A IAIAR+S   +   ++    +     +RWC+
Sbjct:   25 PHWKRNTGFAFVGIGLAFIAIARISSDRERRPIAPAFHIP---SQRWCK 70
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G068_ECTSI4.100e-646.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2717378..2721403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size302
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.215.1prot_P-fluviatile_contig1.215.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2717398..2721403 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.1466658-UTR-P-fluviatile_contig1:2717377..27173971622815265.1466658-UTR-P-fluviatile_contig1:2717377..2717397Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2717378..2717397 +
1693561278.591576-UTR-P-fluviatile_contig1:2717377..27173971693561278.591576-UTR-P-fluviatile_contig1:2717377..2717397Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2717378..2717397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.1576347-CDS-P-fluviatile_contig1:2717397..27176051622815265.1576347-CDS-P-fluviatile_contig1:2717397..2717605Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2717398..2717605 +
1693561278.884681-CDS-P-fluviatile_contig1:2717397..27176051693561278.884681-CDS-P-fluviatile_contig1:2717397..2717605Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2717398..2717605 +
1622815265.1668682-CDS-P-fluviatile_contig1:2721329..27214031622815265.1668682-CDS-P-fluviatile_contig1:2721329..2721403Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2721330..2721403 +
1693561278.9007437-CDS-P-fluviatile_contig1:2721329..27214031693561278.9007437-CDS-P-fluviatile_contig1:2721329..2721403Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2721330..2721403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.215.1

>prot_P-fluviatile_contig1.215.1 ID=prot_P-fluviatile_contig1.215.1|Name=mRNA_P-fluviatile_contig1.215.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=94bp
MATAQRGATPRAGFPSFGLVWRFESRATGGFARPHLGDIEKRRAEAAPPP
TKAESQSHRLRDKYMLFETGKPGDCDDSHANADEREARVALPVG
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mRNA from alignment at P-fluviatile_contig1:2717378..2721403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.215.1 ID=mRNA_P-fluviatile_contig1.215.1|Name=mRNA_P-fluviatile_contig1.215.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4026bp|location=Sequence derived from alignment at P-fluviatile_contig1:2717378..2721403+ (Porterinema fluviatile SAG_2381)
GTCCTCAAACTCTGTCTGCAATGGCAACGGCACAGCGTGGGGCCACGCCT
CGCGCGGGATTTCCTTCCTTCGGATTAGTTTGGCGGTTTGAATCTCGAGC
AACGGGCGGCTTCGCGCGCCCCCACCTGGGCGATATTGAAAAACGTCGTG
CTGAGGCGGCACCACCTCCGACCAAGGCCGAAAGCCAGTCCCATCGTCTA
AGAGACAAGTATATGCTTTTCGAAACCGGTGAGTCGCGAATCCACCGACG
GACCCCACGACGAGGGTGACATCCTGCCTAGCCAAGCGCACTTTACCTCC
CGCCATCACTCCGTCGCAGCTGAAGAGCGAACCGGCTACAGGGGCAACCC
TATTCTAGGGGCCTGTTTGGTGTACATCGTCATCGACGTACGAAACCCAT
TTGTCACGCCCGAATGTACATCCGGCAACCCCGACCCATGTGACTTCAAA
TGATTGCGGTAGCTGCTTGTGTTGCATCCTGGGGAGCGGTGTGGGTCAAC
AATCGGCGTACCTTTGTACCGTTGTCCCTTGTCCTCGTGTCGATTTCAAA
TTTTCGACTCTCACTAACTCGCACGTAAAGATGCGTTGAGAGATGTGGGG
CGCAGGCAATCATTGAATAAAACAGATGGGTGTTACCTTAGAAGGAGATG
AGAAGAAATACCGTCCAGCTGTGTTTGGTCTCCGAGTTTTGTTGTGACCG
TACGTCCACCCCCCCTTTACTCACCTACCATGAGTATCGCAAAGCGGGGC
TACTATATTTCAGAAATCGCGCGAAGCGCAACATCAAACTAAAAGAGGCA
TTCTCTCACCGTGAAGTACTGCATACGACACAAGATAAAACACCCCCTGA
ACAGATTTCCAAATGTCAATTTCTCAGCAACAAAGAGGTTTATGATGCCC
AAATGGATGTCGTTGAAGAAATTTAATCGGTGAATTTTTTGTAGATTTAT
CGCAATTCATTGGCACCATCCTTGATGTGGAGAAATGGAGCTTTGAGAAT
CGGTCCAGGGGGTGAGGTATCTTGAGTCGTATACGGTATTCTCTGTGCAG
GAAACGGAGCCCCCTATCACTGACTTACTCTCAACGAGCTGCGAAGATGG
GATGACAAATGCGACAGAGAATGGCTATACATTTCATCTCTCAAGTTACA
GTGCGCGATCAGCCGCTTGGCTCTGCTGTGACGCGAACACTTGTTTGTGC
CGATGCAGCTGAAAATGATAAATTCATAGAGTAGATGTACCAAAGAGACC
CGTCCATTAAGGGACACTTTTTCAGATCTGCATACCTTTGCGCACGATTC
GTGGGGACCCCTGCTGTCAGCACTCGTTTGCGCACTTAAGCGTGCCGATC
GGCTTATGCAATCTAGAGATACAACACAGTACCCATCAGTACCCGTGATG
CGGGGCGTCTTGGCCCTTTTCAGGCTGCTTGTGCTAAGCACGGGCAGGCC
ACAATTGGACATCTGATTTTGAAAACCTACGATGCGGTACGCCGTTGCAA
GTCAATCAGCGTTGCTGCCGCAGCCAGTGGGGCGGCGCCCAAGAGCACCC
TACTGCACGTGTACACAAGGAGATGGCCTTATATGCCAAGGACGAAAGCT
CAGTGTCGCTTTATAGGGGGGTGGCTTATCTTCCATGGTATTTCGCTGAA
AAGTGAGGTGCGCTACTGTGGCAGAGCTATCTCGTATCATGTGCGGCCGA
TATTCTTCGTCTCTAAGAGGTAGCCTGTGACATACCTACCCCTACATACT
ATGAATCATTTCCACGCCCGAGAAGGAGCTATTCGCGCAGGAGGTGGCTT
AAGGTGTCTCTATTCGGTGGGTTTACTCTAGGGTTGTGTACTGTCCACTT
ACTGTTTGCGTTGTTCGTTGTTCCAGGTTACTTTCTTGCACAGACAATTT
CGATGATGTAAAGAATGCCCGCGGTTATCAACGTCGCTGCTCTGCACAGG
ATTAAAAACCAACCCGGCAGAATTTCGGAGAGACTGAGTTCGCGCGCTGC
CCCCGGTGCCGCCGATAAGTCAATCAAGAAGCTCAACGACGCGGACAAAC
AGCTGCGTTCAGCCCTTTTTTCGACATCTTCGGCGCCATGACCTGGAAAA
CGCAAAATTTTCACATATCAACGCAGTGTGCCGAAGCCATCTGACCTCAC
GTAGAATTAGTGTGCCGCAATCAGAACTTGTGCATGGCATGACCTTGCCT
GGTGCTTCTCAACGCGCACTAACTCCAGCGGGCCCTCTCGAAAATTCAAC
CATTTGGGGCGTGAATGCTGCCGCCACAAGAAAGTCGAGCTCAAACCGTT
CCCGAAAAGGGTGTGTGAAGGGGTCGTACAGCGAGCCTTCTTTACTCATG
CTGATTAACGTCGATTGCCACTGTTCCGCCCCCAACCAACCAGAAGATAA
TTCTGTGCTTCTACTCCGTCCACGCCCGACCCAAAAACATGGTCCGAAAG
CCGACGTCACAACGAGGCTCGAGCTGCAATGCTCTCGCGGTGGAAAATGT
GATGAATTCCAAAGGAAAATGACAACATGTTGCACTTCTGAGGAATCAAC
AAAGCGGCGTCCGTTCTTCACGGCGGGGGTGGCCGCTGCTCTTCAGGCAC
GTGATGACAGACGGCGACGGCTGTTCACCCGCAACCAGACAGCCAAGCCG
CAGCCAAGCCCAACACCTTTGCGTGCACGGCCGTTTAACCGGACAGCATT
TTTCAGGCAAACACCCAAATCAAGAACGAAGCAGCAAACCTGGGCGCCGT
GTTTGCGCGCGGAGCCCTCCCGGCCCGCTTCCCCTTTATCAAACGGTCCT
CGGCGCGAGCCTGTGAACCACGCTGCTCTCCTCCCTCGCACAGCGCAAGC
ACATCACATCAAGAACCATCCACGAGAGTGGGAGAACAGCAGCCGAGAGG
CGAAAGTGGAACCATGTCCTACGCCCCTCCCCTCCTGCCCGATGCATCTA
CCTTACCCTACCGTAGCTACGGCAGCGACGGGTCGTCCTCCTTCGCGTGC
TTGCACCACCTCTGCGAAGGGATGTGGAACGCAGGAGGGATCGGCCGGCG
CTGAAGAAGGCAAACACAAAGAGAGGAGGTGAAATACGGCGGGCGGGGGG
GGGGAGGCGGGGGAGGGTAAGGGTGCTTCGCCGGTTCTTTCATCCGCGAT
AGTTCGTCTTAGAACGTTCTAAACAAGGCTTGATTTTGGAGATGGGACTG
GTGAAGGGGTGCAGGCTCCGGCTCTCAAGTCGACTAGTCCGAGGTGCGCT
AGCCTGCCGTTGACGACAAACATCTGCGTCCACAAGAGAACCGTCTCGAC
TGTTGAGCTGATGCCACAAGGAGCTTTCCAGCTACTCTGAGCATTTCGTT
AGCAGAGCCAGCCTTTGCGTGGTGTAAAAAGCTATGATTACGTTCTTAAC
GGATCAACCAGCCCTCCTGCTGTGTCACTTTCGCGAGCTGAGCGCCTCAC
TACGCCTAGAGGCAGGCAGCACATGAAGGACTGACTTCTAAGCAGCCGAG
CGAAATGCTTGTTGTAGCCGCAGAAGCTCACCGCTGTTCGAGACGTCTTT
GTTCACTTCGCGTTCGGCCGACCCCAGCCAGAAGCTGGCGATCAAACTAT
GGCACCCCTTCGCTTCAGCATGTCTGGGTATGGGCACTGAACAGCTGCTG
GAAAGGCGACGAGAATCATGCCCGCAACAAGCTCTGCAAAAATTGCAAAT
GGAAAATAAAACAAAAGAATCGTTTCCGCTGCTGGAATCGTAGTTGCTCG
TCTCTTCTCGTGAACCGGACGAACCCAGCTCGTAACCCGTTGTTGCCGCA
ACTACCGCTCCAGACCAAACGATTTACAAAAAAACTCGAAACCAAACGCA
AGCGAACTCAACGGCTCTTTGGACGATCAAGCGAGAAAGCGAGCAAACAC
GCGGCGTGATAAACATCATTCTACTCCCTTTTTGCCCACCTCCCGTTCGA
AGGAAAGCCGGGCGATTGCGATGACAGCCACGCCAATGCCGACGAACGCG
AGGCCCGTGTTGCGCTTCCAGTTGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:2717378..2721403+

>mRNA_P-fluviatile_contig1.215.1 ID=mRNA_P-fluviatile_contig1.215.1|Name=mRNA_P-fluviatile_contig1.215.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=564bp|location=Sequence derived from alignment at P-fluviatile_contig1:2717378..2721403+ (Porterinema fluviatile SAG_2381)
ATGGCAACGGCACAGCGTGGGGCCACGCCTCGCGCGGGATTTCCTTCCTT
CGGATTAGTTTGGCGGTTTGAATCTCGAGCAACGGGCGGCTTCGCGCGCC
CCCACCTGGGCGATATTGAAAAACGTCGTGCTGAGGCGGCACCACCTCCG
ACCAAGGCCGAAAGCCAGTCCCATCGTCTAAGAGACAAGTATATGCTTTT
CGAAACCGATGGCAACGGCACAGCGTGGGGCCACGCCTCGCGCGGGATTT
CCTTCCTTCGGATTAGTTTGGCGGTTTGAATCTCGAGCAACGGGCGGCTT
CGCGCGCCCCCACCTGGGCGATATTGAAAAACGTCGTGCTGAGGCGGCAC
CACCTCCGACCAAGGCCGAAAGCCAGTCCCATCGTCTAAGAGACAAGTAT
ATGCTTTTCGAAACCGGAAAGCCGGGCGATTGCGATGACAGCCACGCCAA
TGCCGACGAACGCGAGGCCCGTGTTGCGCTTCCAGTTGGGGAAAGCCGGG
CGATTGCGATGACAGCCACGCCAATGCCGACGAACGCGAGGCCCGTGTTG
CGCTTCCAGTTGGG
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