mRNA_P-fluviatile_contig1.207.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.207.1
Unique NamemRNA_P-fluviatile_contig1.207.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig1.207.1 vs. uniprot
Match: A0A6H5JJY8_9PHAE (DUF2013 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY8_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 6.000e-28
Identity = 93/191 (48.69%), Postives = 108/191 (56.54%), Query Frame = 1 
Query:  859 AAVDSALGRVRRLRELLGSVGGAPAWARLLGGDGRLGCRRLADLALAAGSGVLVLSPKAV----AAPVAEEAEPAG--GIDDNDDLALGLAGPCQRLCSAALGCLAICGRVSPWMWADLSNCDDGEGVGGVQHGDSGVNNNGGDGDRREPSSRLTRLLALALWLAQEKKAAVAAAAKTGLDEHQYFFGKGS 1413
            AA+++A  RV RLRELL SVG A AW+RLL  DG LGCRRLADLALA  S              A P A  A PA   G+D            C+ LC+ AL CLAI G++SP MWADLS  D  E  GG                    SSRL RLL+L + L+   +A VAAAAKTGL+EH+YFFGKGS
Sbjct:  818 AALNNASRRVSRLRELLDSVGEADAWSRLLSADGHLGCRRLADLALAGHSAAAXXXXXXXXXXXAGPQAATASPAPAPGVDTRR---------CRLLCAGALECLAISGKISPGMWADLSKPDQSEEYGGE-------------------SSRLARLLSLCVALSGSHEA-VAAAAKTGLNEHEYFFGKGS 979
[Close]
BLAST of mRNA_P-fluviatile_contig1.207.1 vs. uniprot
Match: D7G065_ECTSI (DUF2013 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G065_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 8.210e-16
Identity = 69/165 (41.82%), Postives = 82/165 (49.70%), Query Frame = 1 
Query:  859 AAVDSALGRVRRLRELLGSVGGAPAWARLLGGDGRLGCRRLADLALAAGSGVLVLSPKAVAAPVAEEAEPAGGIDDNDDLALGLAGPCQRLCSAALGCLAICGRVSPWMWADLSNCDDGEGVGGVQHGDSGVNNNGGDGDRREPSSRLTRLLALALWLAQEKKAA 1353
            AA+ +A  RV RLRELLGSVG A AW+RLL  DG LGCRRLA LA A  S                            D        C+ LC+ AL CLAICG++SP MWADLS  D  E              NGG+      S+RL RLL+L + L+   +AA
Sbjct:  581 AALSNASRRVSRLRELLGSVGEADAWSRLLSADGHLGCRRLAGLAFAGYSAAXXXXXXXXXXXXXXXXXXXXXXXXGVDTRR-----CRLLCAGALECLAICGKISPGMWADLSKPDQSE-------------ENGGE------SNRLARLLSLCVALSGSHEAA 721
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJY8_9PHAE6.000e-2848.69DUF2013 domain-containing protein n=1 Tax=Ectocarp... [more]
D7G065_ECTSI8.210e-1641.82DUF2013 domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2649743..2652157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF2013
Ec32 orthologEc-05_003970.1
Exons2
Model size1465
Cds size1461
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815264.785942-CDS-P-fluviatile_contig1:2649744..26511361622815264.785942-CDS-P-fluviatile_contig1:2649744..2651136Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2649745..2651136 -
1693561274.0470326-CDS-P-fluviatile_contig1:2649744..26511361693561274.0470326-CDS-P-fluviatile_contig1:2649744..2651136Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2649745..2651136 -
1622815264.9082587-CDS-P-fluviatile_contig1:2652088..26521571622815264.9082587-CDS-P-fluviatile_contig1:2652088..2652157Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2652089..2652157 -
1693561274.1976388-CDS-P-fluviatile_contig1:2652088..26521571693561274.1976388-CDS-P-fluviatile_contig1:2652088..2652157Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2652089..2652157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.207.1prot_P-fluviatile_contig1.207.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2649745..2652157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.207.1

>prot_P-fluviatile_contig1.207.1 ID=prot_P-fluviatile_contig1.207.1|Name=mRNA_P-fluviatile_contig1.207.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=487bp
GNEADVAAGWDEVGFSGKGAGDEIATITAFVAATASAATAADREAPDEAH
FARLAVKTGGQRHERRRGGHQPEEEKGRRREQQQQQPPERDSSVEKAASR
SLGCLTTMLTSPSDERDDHQSDELSRAPRDEAVSSGGEDRPLVLTSENFR
QASGFIIGDFADTSFWGKGPSPEGGGGRQQPPAFAGDGRQQQQAVAGVGG
QESDPSAEMGGEAPARGGDEISRSGPASSAPAPGAAAAAVSAAAAALEAA
APAAGAATAVAAAAAAAAPAAPAASSSSLVCTPSATAAVDSALGRVRRLR
ELLGSVGGAPAWARLLGGDGRLGCRRLADLALAAGSGVLVLSPKAVAAPV
AEEAEPAGGIDDNDDLALGLAGPCQRLCSAALGCLAICGRVSPWMWADLS
NCDDGEGVGGVQHGDSGVNNNGGDGDRREPSSRLTRLLALALWLAQEKKA
AVAAAAKTGLDEHQYFFGKGSEGRGGGGRNMKGKVER
back to top

mRNA from alignment at P-fluviatile_contig1:2649743..2652157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.207.1 ID=mRNA_P-fluviatile_contig1.207.1|Name=mRNA_P-fluviatile_contig1.207.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2415bp|location=Sequence derived from alignment at P-fluviatile_contig1:2649743..2652157- (Porterinema fluviatile SAG_2381)
GGAAACGAGGCTGATGTGGCAGCGGGGTGGGACGAAGTGGGTTTTTCGGG
CAAGGGTGCTGGCGATGAGGTGCGGTTGCAGTTGGTCCTTTGCGTGGCGC
TATGCTCGGAAGCGCGCGGTTGGGGTGGGGCCGGGGGGGATGACTGGGGC
CGTGTTTGAGCCGGAGATTTCATTTCTTCTGGAAACGGATGGCCGGGGCC
GCTTGTTTCTCGTTTCAAAAATGTGGCGGCAGACGAACGTTCATTTTTCC
ATGAAGCCCTCAGGCCAGAGGGAGCTACATGTAAAAGCTTCGCCTTGGAT
CAATGTCTCCCGGTGAAGCTGTGTTTTGGCCTTTCCATATTCTTACCATC
TTCGCAATGCTTTTTCGTCAATTGCTCCACAAAAGTTGATTAGGATTAGT
GTGGAAAAAAAATGAAGTAACGCGTCCATGGTGGTGAAGACCTTGGAGGA
CACGCCGGGACGTTGTCCCCCCAAATTACACATCCCTTGATCTGCGCATG
GCTTTTTCGTTCCTGTGAACCCATGTGGTCAAACCCTGAAACCACACCCA
CAGACCTAGTTTGATCCAGAGAGTTCCGGGGGATGAGGTTCTGAAGGGAG
TGTGCACATCGGCTGCAGGTGCAGGACTCCGGTGCCGTCCTTGGTAAAGC
ACACGACCCGGCCGGAACATACCACGAAAACTTTCGAGGGTAGGGTCGTG
AAAGCCACACGTATGCTAACCTACCGCCAGTGTGCGGGGCGCGGACAGCC
CTGGCCGAGACACAGACCGGTTGTGGATCTTCCGGCGCCCTTCAAGAACC
TCCCGTGTGCCACCCTGAAGGTGGCTGCAGGCGGACGTCGTGAAACGACC
CGACCAACGAAGTTGAGATCTAGAAGTCCCCCGGCAAGTCCCAAGCTTCC
CCCCCACCGCAGTTTTTACGACACCCCTAAGTTTTCGCGATTGAGAGGTG
GGGTTGAAACGTCCTCCCTTGTTCACGCTGCCTCGTCGTCCCCTGCCTGC
CCCGTGTGTGCGTTCTCTCAGATCGCCACCATCACGGCGTTCGTCGCCGC
AACAGCATCGGCAGCAACAGCCGCCGACAGAGAGGCCCCAGACGAGGCTC
ATTTCGCGCGTTTGGCGGTAAAAACAGGTGGGCAACGACACGAGCGGAGG
AGGGGTGGGCACCAGCCAGAAGAGGAGAAGGGCCGGCGGCGGGAGCAGCA
GCAGCAACAGCCACCCGAACGAGACAGCTCGGTGGAAAAGGCGGCCTCGC
GTAGCTTGGGCTGCCTCACGACCATGCTCACTTCGCCCTCCGATGAGCGG
GACGACCATCAGTCCGATGAGCTCTCACGAGCACCACGCGACGAGGCCGT
GAGCAGCGGCGGCGAGGATCGACCGTTGGTGTTGACTTCCGAGAATTTTA
GACAGGCTTCAGGCTTCATTATCGGCGACTTCGCGGATACCAGTTTTTGG
GGGAAGGGACCTTCCCCGGAGGGCGGGGGAGGTAGGCAACAACCGCCTGC
CTTCGCAGGAGATGGAAGACAACAACAGCAGGCCGTTGCGGGGGTGGGGG
GACAAGAATCAGACCCGTCGGCCGAGATGGGCGGAGAGGCGCCCGCCCGA
GGTGGTGACGAGATCAGTAGGAGCGGGCCAGCGTCATCAGCTCCGGCACC
TGGAGCCGCGGCAGCAGCAGTGAGCGCAGCGGCGGCGGCGTTGGAGGCGG
CAGCACCGGCGGCAGGGGCAGCAACAGCGGTGGCGGCGGCGGCGGCGGCG
GCAGCACCAGCAGCACCAGCAGCTTCCTCCTCATCTCTCGTCTGTACTCC
GTCGGCGACGGCGGCTGTTGATAGCGCCCTGGGGAGGGTGCGTCGCCTCC
GAGAGTTGCTTGGCTCCGTGGGCGGGGCCCCGGCGTGGGCGCGGCTGCTG
GGCGGAGACGGTCGCCTTGGCTGCCGCCGCCTCGCTGACTTGGCGCTCGC
CGCCGGGTCCGGAGTCCTCGTGCTGTCACCGAAAGCCGTTGCGGCACCGG
TGGCAGAGGAGGCGGAGCCAGCTGGCGGCATCGATGACAACGACGACCTC
GCGTTAGGTCTCGCGGGGCCGTGCCAGCGGCTGTGCTCGGCCGCCCTCGG
GTGTTTGGCGATCTGCGGCAGGGTGAGCCCCTGGATGTGGGCCGACCTGT
CTAATTGTGACGATGGCGAGGGGGTGGGGGGAGTCCAACACGGCGATAGC
GGCGTGAATAACAACGGCGGCGACGGCGATCGACGGGAGCCGTCGTCGAG
GCTGACGCGGCTCCTTGCCCTCGCCCTCTGGCTGGCGCAGGAAAAGAAGG
CCGCGGTGGCGGCAGCAGCGAAGACGGGATTGGACGAGCACCAGTACTTT
TTCGGCAAGGGGAGTGAGGGGCGCGGAGGTGGGGGCAGAAACATGAAGGG
GAAGGTAGAGCGCAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:2649743..2652157-

>mRNA_P-fluviatile_contig1.207.1 ID=mRNA_P-fluviatile_contig1.207.1|Name=mRNA_P-fluviatile_contig1.207.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2922bp|location=Sequence derived from alignment at P-fluviatile_contig1:2649743..2652157- (Porterinema fluviatile SAG_2381)
GGAAACGAGGCTGATGTGGCAGCGGGGTGGGACGAAGTGGGTTTTTCGGG
CAAGGGTGCTGGCGATGAGGGAAACGAGGCTGATGTGGCAGCGGGGTGGG
ACGAAGTGGGTTTTTCGGGCAAGGGTGCTGGCGATGAGATCGCCACCATC
ACGGCGTTCGTCGCCGCAACAGCATCGGCAGCAACAGCCGCCGACAGAGA
GGCCCCAGACGAGGCTCATTTCGCGCGTTTGGCGGTAAAAACAGGTGGGC
AACGACACGAGCGGAGGAGGGGTGGGCACCAGCCAGAAGAGGAGAAGGGC
CGGCGGCGGGAGCAGCAGCAGCAACAGCCACCCGAACGAGACAGCTCGGT
GGAAAAGGCGGCCTCGCGTAGCTTGGGCTGCCTCACGACCATGCTCACTT
CGCCCTCCGATGAGCGGGACGACCATCAGTCCGATGAGCTCTCACGAGCA
CCACGCGACGAGGCCGTGAGCAGCGGCGGCGAGGATCGACCGTTGGTGTT
GACTTCCGAGAATTTTAGACAGGCTTCAGGCTTCATTATCGGCGACTTCG
CGGATACCAGTTTTTGGGGGAAGGGACCTTCCCCGGAGGGCGGGGGAGGT
AGGCAACAACCGCCTGCCTTCGCAGGAGATGGAAGACAACAACAGCAGGC
CGTTGCGGGGGTGGGGGGACAAGAATCAGACCCGTCGGCCGAGATGGGCG
GAGAGGCGCCCGCCCGAGGTGGTGACGAGATCAGTAGGAGCGGGCCAGCG
TCATCAGCTCCGGCACCTGGAGCCGCGGCAGCAGCAGTGAGCGCAGCGGC
GGCGGCGTTGGAGGCGGCAGCACCGGCGGCAGGGGCAGCAACAGCGGTGG
CGGCGGCGGCGGCGGCGGCAGCACCAGCAGCACCAGCAGCTTCCTCCTCA
TCTCTCGTCTGTACTCCGTCGGCGACGGCGGCTGTTGATAGCGCCCTGGG
GAGGGTGCGTCGCCTCCGAGAGTTGCTTGGCTCCGTGGGCGGGGCCCCGG
CGTGGGCGCGGCTGCTGGGCGGAGACGGTCGCCTTGGCTGCCGCCGCCTC
GCTGACTTGGCGCTCGCCGCCGGGTCCGGAGTCCTCGTGCTGTCACCGAA
AGCCGTTGCGGCACCGGTGGCAGAGGAGGCGGAGCCAGCTGGCGGCATCG
ATGACAACGACGACCTCGCGTTAGGTCTCGCGGGGCCGTGCCAGCGGCTG
TGCTCGGCCGCCCTCGGGTGTTTGGCGATCTGCGGCAGGGTGAGCCCCTG
GATGTGGGCCGACCTGTCTAATTGTGACGATGGCGAGGGGGTGGGGGGAG
TCCAACACGGCGATAGCGGCGTGAATAACAACGGCGGCGACGGCGATCGA
CGGGAGCCGTCGTCGAGGCTGACGCGGCTCCTTGCCCTCGCCCTCTGGCT
GGCGCAGGAAAAGAAGGCCGCGGTGGCGGCAGCAGCGAAGACGGGATTGG
ACGAGCACCAGTACTTTTTCGGCAAGGGGAGTGAGGGGCGCGGAGGTGGG
GGCAGAAACATGAAGGGGAAGGTAGAGCGCATCGCCACCATCACGGCGTT
CGTCGCCGCAACAGCATCGGCAGCAACAGCCGCCGACAGAGAGGCCCCAG
ACGAGGCTCATTTCGCGCGTTTGGCGGTAAAAACAGGTGGGCAACGACAC
GAGCGGAGGAGGGGTGGGCACCAGCCAGAAGAGGAGAAGGGCCGGCGGCG
GGAGCAGCAGCAGCAACAGCCACCCGAACGAGACAGCTCGGTGGAAAAGG
CGGCCTCGCGTAGCTTGGGCTGCCTCACGACCATGCTCACTTCGCCCTCC
GATGAGCGGGACGACCATCAGTCCGATGAGCTCTCACGAGCACCACGCGA
CGAGGCCGTGAGCAGCGGCGGCGAGGATCGACCGTTGGTGTTGACTTCCG
AGAATTTTAGACAGGCTTCAGGCTTCATTATCGGCGACTTCGCGGATACC
AGTTTTTGGGGGAAGGGACCTTCCCCGGAGGGCGGGGGAGGTAGGCAACA
ACCGCCTGCCTTCGCAGGAGATGGAAGACAACAACAGCAGGCCGTTGCGG
GGGTGGGGGGACAAGAATCAGACCCGTCGGCCGAGATGGGCGGAGAGGCG
CCCGCCCGAGGTGGTGACGAGATCAGTAGGAGCGGGCCAGCGTCATCAGC
TCCGGCACCTGGAGCCGCGGCAGCAGCAGTGAGCGCAGCGGCGGCGGCGT
TGGAGGCGGCAGCACCGGCGGCAGGGGCAGCAACAGCGGTGGCGGCGGCG
GCGGCGGCGGCAGCACCAGCAGCACCAGCAGCTTCCTCCTCATCTCTCGT
CTGTACTCCGTCGGCGACGGCGGCTGTTGATAGCGCCCTGGGGAGGGTGC
GTCGCCTCCGAGAGTTGCTTGGCTCCGTGGGCGGGGCCCCGGCGTGGGCG
CGGCTGCTGGGCGGAGACGGTCGCCTTGGCTGCCGCCGCCTCGCTGACTT
GGCGCTCGCCGCCGGGTCCGGAGTCCTCGTGCTGTCACCGAAAGCCGTTG
CGGCACCGGTGGCAGAGGAGGCGGAGCCAGCTGGCGGCATCGATGACAAC
GACGACCTCGCGTTAGGTCTCGCGGGGCCGTGCCAGCGGCTGTGCTCGGC
CGCCCTCGGGTGTTTGGCGATCTGCGGCAGGGTGAGCCCCTGGATGTGGG
CCGACCTGTCTAATTGTGACGATGGCGAGGGGGTGGGGGGAGTCCAACAC
GGCGATAGCGGCGTGAATAACAACGGCGGCGACGGCGATCGACGGGAGCC
GTCGTCGAGGCTGACGCGGCTCCTTGCCCTCGCCCTCTGGCTGGCGCAGG
AAAAGAAGGCCGCGGTGGCGGCAGCAGCGAAGACGGGATTGGACGAGCAC
CAGTACTTTTTCGGCAAGGGGAGTGAGGGGCGCGGAGGTGGGGGCAGAAA
CATGAAGGGGAAGGTAGAGCGC
back to top