mRNA_P-fluviatile_contig1.191.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.191.1
Unique NamemRNA_P-fluviatile_contig1.191.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2451060..2451428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size370
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.2639909-CDS-P-fluviatile_contig1:2451059..24514011622815269.2639909-CDS-P-fluviatile_contig1:2451059..2451401Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2451060..2451401 +
1693561319.9826818-CDS-P-fluviatile_contig1:2451059..24514011693561319.9826818-CDS-P-fluviatile_contig1:2451059..2451401Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2451060..2451401 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.2744138-UTR-P-fluviatile_contig1:2451401..24514281622815269.2744138-UTR-P-fluviatile_contig1:2451401..2451428Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2451402..2451428 +
1693561320.056054-UTR-P-fluviatile_contig1:2451401..24514281693561320.056054-UTR-P-fluviatile_contig1:2451401..2451428Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2451402..2451428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.191.1prot_P-fluviatile_contig1.191.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2451060..2451401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.191.1

>prot_P-fluviatile_contig1.191.1 ID=prot_P-fluviatile_contig1.191.1|Name=mRNA_P-fluviatile_contig1.191.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=114bp
VIHSCTSPSGHFSVPNANQVVREYYIFHDNSQSSRRDGDLSGLRCLWSVG
RTEVATRRGANERSLPPKKSGKGCVVLVERFIDTPFSMRSCGERQHCKHV
QFLSVALTVRTRC*
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mRNA from alignment at P-fluviatile_contig1:2451060..2451428+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.191.1 ID=mRNA_P-fluviatile_contig1.191.1|Name=mRNA_P-fluviatile_contig1.191.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=369bp|location=Sequence derived from alignment at P-fluviatile_contig1:2451060..2451428+ (Porterinema fluviatile SAG_2381)
GTCATCCACTCATGTACGTCACCCTCAGGGCACTTCTCCGTACCAAATGC
CAATCAGGTAGTGCGTGAGTATTATATCTTTCACGACAATTCACAGAGTT
CTCGTCGAGATGGGGATCTCAGCGGTTTGAGATGTCTTTGGTCTGTCGGT
CGGACAGAAGTTGCAACGCGACGCGGCGCCAACGAGCGTTCTCTCCCCCC
AAAAAAATCGGGAAAAGGGTGCGTCGTCCTTGTTGAAAGGTTTATAGACA
CACCTTTTTCGATGCGCTCTTGCGGCGAGCGGCAACACTGTAAACACGTT
CAGTTTCTCTCGGTTGCCCTGACTGTTCGCACTCGATGTTGACGACGGTC
CATCTGTCCTGCTTCATGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:2451060..2451428+

>mRNA_P-fluviatile_contig1.191.1 ID=mRNA_P-fluviatile_contig1.191.1|Name=mRNA_P-fluviatile_contig1.191.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=684bp|location=Sequence derived from alignment at P-fluviatile_contig1:2451060..2451428+ (Porterinema fluviatile SAG_2381)
GTCATCCACTCATGTACGTCACCCTCAGGGCACTTCTCCGTACCAAATGC
CAATCAGGTAGTGCGTGAGTATTATATCTTTCACGACAATTCACAGAGTT
CTCGTCGAGATGGGGATCTCAGCGGTTTGAGATGTCTTTGGTCTGTCGGT
CGGACAGAAGTTGCAACGCGACGCGGCGCCAACGAGCGTTCTCTCCCCCC
AAAAAAATCGGGAAAAGGGTGCGTCGTCCTTGTTGAAAGGTTTATAGACA
CACCTTTTTCGATGCGCTCTTGCGGCGAGCGGCAACACTGTAAACACGTT
CAGTTTCTCTCGGTTGCCCTGACTGTTCGCACTCGATGTTGAGTCATCCA
CTCATGTACGTCACCCTCAGGGCACTTCTCCGTACCAAATGCCAATCAGG
TAGTGCGTGAGTATTATATCTTTCACGACAATTCACAGAGTTCTCGTCGA
GATGGGGATCTCAGCGGTTTGAGATGTCTTTGGTCTGTCGGTCGGACAGA
AGTTGCAACGCGACGCGGCGCCAACGAGCGTTCTCTCCCCCCAAAAAAAT
CGGGAAAAGGGTGCGTCGTCCTTGTTGAAAGGTTTATAGACACACCTTTT
TCGATGCGCTCTTGCGGCGAGCGGCAACACTGTAAACACGTTCAGTTTCT
CTCGGTTGCCCTGACTGTTCGCACTCGATGTTGA
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