mRNA_P-fluviatile_contig1.184.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.184.1
Unique NamemRNA_P-fluviatile_contig1.184.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2362892..2363501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size610
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.184.1prot_P-fluviatile_contig1.184.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2362913..2363257 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.2020345-UTR-P-fluviatile_contig1:2362891..23629121622815269.2020345-UTR-P-fluviatile_contig1:2362891..2362912Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2362892..2362912 +
1693561319.87537-UTR-P-fluviatile_contig1:2362891..23629121693561319.87537-UTR-P-fluviatile_contig1:2362891..2362912Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2362892..2362912 +
1622815269.2308068-UTR-P-fluviatile_contig1:2363257..23635011622815269.2308068-UTR-P-fluviatile_contig1:2363257..2363501Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2363258..2363501 +
1693561319.9665864-UTR-P-fluviatile_contig1:2363257..23635011693561319.9665864-UTR-P-fluviatile_contig1:2363257..2363501Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2363258..2363501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.2159572-CDS-P-fluviatile_contig1:2362912..23632571622815269.2159572-CDS-P-fluviatile_contig1:2362912..2363257Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2362913..2363257 +
1693561319.89051-CDS-P-fluviatile_contig1:2362912..23632571693561319.89051-CDS-P-fluviatile_contig1:2362912..2363257Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2362913..2363257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.184.1

>prot_P-fluviatile_contig1.184.1 ID=prot_P-fluviatile_contig1.184.1|Name=mRNA_P-fluviatile_contig1.184.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=115bp
MFLTQKTPQISTRKTKNRSQTVTGPEKFRYPDLWDRRRTLLPEAFVIHIT
DRTHIRVRQQPRPCFLGRRKCDTGSVPRTPRGEGNALSTITTPHRRQKNR
QSSPSLLLQEAGRK*
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mRNA from alignment at P-fluviatile_contig1:2362892..2363501+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.184.1 ID=mRNA_P-fluviatile_contig1.184.1|Name=mRNA_P-fluviatile_contig1.184.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=610bp|location=Sequence derived from alignment at P-fluviatile_contig1:2362892..2363501+ (Porterinema fluviatile SAG_2381)
GCCCGCTGATAAAAAGATAACATGTTTTTAACTCAAAAAACACCACAGAT
TTCAACCAGAAAAACGAAAAACAGATCACAGACGGTTACGGGCCCGGAAA
AATTTAGGTACCCTGACTTATGGGACAGACGAAGGACGCTTCTACCGGAG
GCATTCGTCATACACATAACCGACCGAACACATATACGAGTACGACAACA
ACCCCGTCCGTGTTTTTTAGGAAGGAGGAAGTGCGACACCGGATCGGTCC
CACGGACACCCCGAGGCGAAGGGAATGCGCTGAGCACAATAACAACACCC
CACCGGCGACAAAAAAACAGGCAGTCGAGCCCCTCCCTCCTACTTCAAGA
AGCAGGTCGAAAGTGACAAAAAACACACACTCGTCAACGGAGGGACATCA
CGTAGACACTGAGCACTAAGACGCAATAAGCTTGCACGGCGGGCGAAATT
TCGTACATCTTAGGCAAGGTCGGTGGAACTGGCTGCAGCTCCTGAAGCCG
GGTCGATGCACCGGACCAGGAATGACAAAAAAAAACGTCGTTCGGAAGGA
CGGCAAGCGAACGCGCCGCCTGCTGATAAAGCGGGCCTAGTCTTTCTACG
ACCACTAGCT
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:2362892..2363501+

>mRNA_P-fluviatile_contig1.184.1 ID=mRNA_P-fluviatile_contig1.184.1|Name=mRNA_P-fluviatile_contig1.184.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=690bp|location=Sequence derived from alignment at P-fluviatile_contig1:2362892..2363501+ (Porterinema fluviatile SAG_2381)
ATGTTTTTAACTCAAAAAACACCACAGATTTCAACCAGAAAAACGAAAAA
CAGATCACAGACGGTTACGGGCCCGGAAAAATTTAGGTACCCTGACTTAT
GGGACAGACGAAGGACGCTTCTACCGGAGGCATTCGTCATACACATAACC
GACCGAACACATATACGAGTACGACAACAACCCCGTCCGTGTTTTTTAGG
AAGGAGGAAGTGCGACACCGGATCGGTCCCACGGACACCCCGAGGCGAAG
GGAATGCGCTGAGCACAATAACAACACCCCACCGGCGACAAAAAAACAGG
CAGTCGAGCCCCTCCCTCCTACTTCAAGAAGCAGGTCGAAAGTGAATGTT
TTTAACTCAAAAAACACCACAGATTTCAACCAGAAAAACGAAAAACAGAT
CACAGACGGTTACGGGCCCGGAAAAATTTAGGTACCCTGACTTATGGGAC
AGACGAAGGACGCTTCTACCGGAGGCATTCGTCATACACATAACCGACCG
AACACATATACGAGTACGACAACAACCCCGTCCGTGTTTTTTAGGAAGGA
GGAAGTGCGACACCGGATCGGTCCCACGGACACCCCGAGGCGAAGGGAAT
GCGCTGAGCACAATAACAACACCCCACCGGCGACAAAAAAACAGGCAGTC
GAGCCCCTCCCTCCTACTTCAAGAAGCAGGTCGAAAGTGA
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