mRNA_P-fluviatile_contig1.18.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.18.1
Unique NamemRNA_P-fluviatile_contig1.18.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.18.1 vs. uniprot
Match: D8LFY0_ECTSI (Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY0_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 5.280e-23
Identity = 63/115 (54.78%), Postives = 79/115 (68.70%), Query Frame = 1 
Query:    1 MEEPSASGKVQVGRTSKFSVLDPKGSKVKHVAAPAEEAVGGDEGEQLGTKKNGKRENKTRLTESTGKLIEEGRGKIGGEFILQAGRQ*G*RLVSVFCSVFS---ERSFRRPPLRL 336
            M  P+ +GKVQVGRTSKFSVLDPKGSKVKHV APA  A      +++  K +GKRE+KTRLTESTGKLIEEGRG IGG+F LQ   +      + F ++ +   ER  ++P L +
Sbjct:    1 MAGPAVAGKVQVGRTSKFSVLDPKGSKVKHVVAPAAAATAPTVADEVANK-DGKRESKTRLTESTGKLIEEGRGNIGGDFTLQGNPKFLKERSAKFDAIAARQKERLAQKPKLEI 114
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFY0_ECTSI5.280e-2354.78Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:218481..221110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.5e-21
Seed eggNOG ortholog2880.D8LFY0
KEGG rclassRC00055,RC00523
KEGG koko:K01868
KEGG ReactionR03663
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
EggNOG free text desc.threonyl-tRNA aminoacylation
EggNOG OGsCOG0441@1,KOG1637@2759
EC6.1.1.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size619
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.18.1prot_P-fluviatile_contig1.18.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 218481..220755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815272.9470162-CDS-P-fluviatile_contig1:218480..2186221622815272.9470162-CDS-P-fluviatile_contig1:218480..218622Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 218481..218622 +
1693561328.5223565-CDS-P-fluviatile_contig1:218480..2186221693561328.5223565-CDS-P-fluviatile_contig1:218480..218622Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 218481..218622 +
1622815272.9597893-CDS-P-fluviatile_contig1:220633..2207551622815272.9597893-CDS-P-fluviatile_contig1:220633..220755Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 220634..220755 +
1693561328.5326622-CDS-P-fluviatile_contig1:220633..2207551693561328.5326622-CDS-P-fluviatile_contig1:220633..220755Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 220634..220755 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815272.9695451-UTR-P-fluviatile_contig1:220755..2211101622815272.9695451-UTR-P-fluviatile_contig1:220755..221110Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 220756..221110 +
1693561328.5403597-UTR-P-fluviatile_contig1:220755..2211101693561328.5403597-UTR-P-fluviatile_contig1:220755..221110Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 220756..221110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.18.1

>prot_P-fluviatile_contig1.18.1 ID=prot_P-fluviatile_contig1.18.1|Name=mRNA_P-fluviatile_contig1.18.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=88bp
MEEPSASGKVQVGRTSKFSVLDPKGSKVKHVAAPAEEAVGGDEGEQLGTK
KNGKRENKTRLTESTGKLIEEGRGKIGGEFILQAGRQ*
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mRNA from alignment at P-fluviatile_contig1:218481..221110+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.18.1 ID=mRNA_P-fluviatile_contig1.18.1|Name=mRNA_P-fluviatile_contig1.18.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2630bp|location=Sequence derived from alignment at P-fluviatile_contig1:218481..221110+ (Porterinema fluviatile SAG_2381)
ATGGAGGAGCCGTCAGCTTCCGGTAAGGTCCAAGTGGGCCGCACGTCCAA
GTTCAGCGTGCTCGACCCAAAGGGGAGCAAGGTCAAGCACGTAGCCGCTC
CCGCGGAGGAGGCGGTCGGTGGCGATGAAGGTGAGCAGCTGGGTTGGCTG
TGCCTCCAGCCAGGTCCCTTTCATTTCGGGGCTCTGGAACACTACGTGTT
CAGATACGGTCGCAGAGAAAGGTAGAGATGAGATACACACGCAGCAGAGA
TCTCCTTCGGAGGATTTGGAACAACCCATGCGAGCCGCACATCAAACCTT
CGCCTCTGTCCCGCCACACCTGCTGCTGCTGCTATGAGTAGAGTAAGATG
GAAGGAAGGGAAAGGGAGTTGATCGTCTCCGTGGCAGTCGTTTTCATGTG
ATGTTGCTCTCGCTGGCAACCGTCCTGGCAACCCTCCGCAGCCCAGCTCG
CACAACGGGCCTGTGGCGGCCACACGGACTGGTCTCAAAATTGCCGCGTA
CACTCAACTCAACGATGAAATCAGAGCGCTTTGGTCCTTCGCCAGAAATG
CATTGCTCTGTGCTACGCTCCTTCATGGCGCGTGAAGGATGTGAAATTCG
GTATTGATTGGCAGCGCGAACAGCCTTTCAAATTTCGTTCGCCACCAGGC
GCCGCGAGGCGGTCTGGAAAAGTGCACTTGAGCTAATACGGTGTATACCA
CCCACCCCTGGAAAGCGATGTTCGAAACTCGAAAGCTTTGCAGAACGCGA
CACAATGAACAGGGCCAGGGAACAAAATCGGCATCGAAAACATCCTTTCG
AAGCTACTCCCAATAGTATCTCATAACGCAGTAGCACGCTCGACGACGAG
CGGCTCTACCGAAGACGAGCCGTGTGTCTTCGGGGTCTTTAAAACACTTT
CGACGGATGCATCGAAGGTACAAGGGGGATACCCCGTGGCACGCAGGGGG
GTTGAAGGGTGCTGAGAGGTGTTTGGTCTCTTGGCACAAGGGCGAGAAGG
AGGCTAGCCGGAAACGAGCGATCAAACGAGGCACCGAGACCTAGAATGGC
AAGACGGCAAAAAACCAAAACGACCGGAGGGGTGCTACACGAGATGAGCG
AGGTGGCGCGGGAAACAAGCAAGAGAGAAGAGGCGGATCGCGTCGCGCGA
CTTTGGGCAGATTGATGTTTTGCGCCCTTGACTAATAATGCTGTACCCTC
CCCCTCGAGGTGGTGGCGACGTTTTATCTCTGTGGTCTTGTTTGTTGCGC
CATTGTGATTATTTCTGGCTGGTATCTCTGGTTTGCTTGCTGTCGTGATC
TATTTTCGGCCTCGTCCTCGTGGAGCCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCCACGGGTGCTGCCCACGTCTTGTCATGTATC
TGTGCAGAGGTCTCCTCGGGTGTCGACCTTATCGAAAGACCCGAATTTCG
ACATTGGCCGCCGTGCACAAGACGCATTGGGAGAGCGAAGAGCTGAATGA
CGGGCGCCGACGTGTCGTCATAGCTCAACTCTTTCCCTAATCAAATCTCC
ACAGAGTGAAGAACAACGCGACGACAAGCGCGACGACAACAGCACGTAGA
AACAGCATGTATTGATAGAACACGGGCCAACACCACTTTCACAACACCTT
GCGAGGAGCACCCATCGAGACATCGAGCCACATAAGCCATAATTTGCTCG
CGTTGCCCTTAGTGCTTGAGCACGCCGCCGATGAAAGCCTTGACCAAAAG
CAAAAAAATGAAAACGATTCAAAAAGGCAACCCAAATTAACTGTAAACTA
TTCGCGTCGCTGCTCACGCATCATGTGTGCACGCATTCTTGTTGTGGGAC
TGGTCTGGCCGCAATACCACTGACGTAGCGAGAAAGTCCACTGACATCGT
TCAACCTCTTTGTTTCCCTGTTCGATTCAAGTCGGTGGCCAGGTGCAAGG
CCATCGTTTTCAGCTGCCTCACTACGCCTTATCCCGGGCCCCCCACCGCT
GAATAAATGGTTTTGGAGCAACTCGTCGATGACTTCGCCCGTCGCTGCGA
ACGCACCATGCCTGTTTGTCTTGCACTCGCGTTGGTGCTGGCCTGGGGTC
TGGCCTGGCCTGGTCTGGTCTGGTCTGGTCTGGTCTGGTCTTTTACATGA
CAGGCACCAAGAAGAACGGAAAGCGAGAAAACAAGACCCGCCTCACGGAG
TCGACGGGCAAGCTGATCGAGGAGGGAAGGGGAAAGATCGGCGGAGAGTT
TATCCTTCAGGCGGGTCGCCAGTAGGGATAGAGGCTAGTGTCTGTTTTCT
GCTCCGTATTTTCGGAACGGTCATTCCGGCGCCCACCCTTGAGGTTGCAT
TGGTTCGTAGGCTTTACGGTGGTGAAGTCGTTTGCGCGCTCGCGAAGAAG
CATTTTTTACCCCTTCTCATTACACCGACCGTTGCGTTGCAGGGGCGTTT
CTCGCCGGAGCTCCGATGCTTGATCGCACAGAAGGTTCCCCTCTTTGCCT
GAGGCCCCCAACCGCCTTCCTGCGGTGTATTCCTGTTGGTTTTTGAAGCG
AGGGAGTTCGGCAGTTTCTTCCCTGAGTGAAAACATGGGCTTGCTTCTTG
CAGTATCTCTGATTCACGAACATGCATGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:218481..221110+

>mRNA_P-fluviatile_contig1.18.1 ID=mRNA_P-fluviatile_contig1.18.1|Name=mRNA_P-fluviatile_contig1.18.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=528bp|location=Sequence derived from alignment at P-fluviatile_contig1:218481..221110+ (Porterinema fluviatile SAG_2381)
ATGGAGGAGCCGTCAGCTTCCGGTAAGGTCCAAGTGGGCCGCACGTCCAA
GTTCAGCGTGCTCGACCCAAAGGGGAGCAAGGTCAAGCACGTAGCCGCTC
CCGCGGAGGAGGCGGTCGGTGGCGATGAAGGTGAGCAGCTGGATGGAGGA
GCCGTCAGCTTCCGGTAAGGTCCAAGTGGGCCGCACGTCCAAGTTCAGCG
TGCTCGACCCAAAGGGGAGCAAGGTCAAGCACGTAGCCGCTCCCGCGGAG
GAGGCGGTCGGTGGCGATGAAGGTGAGCAGCTGGGCACCAAGAAGAACGG
AAAGCGAGAAAACAAGACCCGCCTCACGGAGTCGACGGGCAAGCTGATCG
AGGAGGGAAGGGGAAAGATCGGCGGAGAGTTTATCCTTCAGGCGGGTCGC
CAGTAGGCACCAAGAAGAACGGAAAGCGAGAAAACAAGACCCGCCTCACG
GAGTCGACGGGCAAGCTGATCGAGGAGGGAAGGGGAAAGATCGGCGGAGA
GTTTATCCTTCAGGCGGGTCGCCAGTAG
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