mRNA_P-fluviatile_contig1.176.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.176.1
Unique NamemRNA_P-fluviatile_contig1.176.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2265672..2266894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF2358
Ec32 orthologEc-05_003630.1
Exons3
Model size449
Cds size432
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.176.1prot_P-fluviatile_contig1.176.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2265672..2266878 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815264.630309-CDS-P-fluviatile_contig1:2265671..22657521622815264.630309-CDS-P-fluviatile_contig1:2265671..2265752Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2265672..2265752 -
1693561270.7948558-CDS-P-fluviatile_contig1:2265671..22657521693561270.7948558-CDS-P-fluviatile_contig1:2265671..2265752Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2265672..2265752 -
1622815264.6409974-CDS-P-fluviatile_contig1:2266245..22663331622815264.6409974-CDS-P-fluviatile_contig1:2266245..2266333Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2266246..2266333 -
1693561271.6664174-CDS-P-fluviatile_contig1:2266245..22663331693561271.6664174-CDS-P-fluviatile_contig1:2266245..2266333Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2266246..2266333 -
1622815264.6546986-CDS-P-fluviatile_contig1:2266615..22668781622815264.6546986-CDS-P-fluviatile_contig1:2266615..2266878Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2266616..2266878 -
1693561272.0046358-CDS-P-fluviatile_contig1:2266615..22668781693561272.0046358-CDS-P-fluviatile_contig1:2266615..2266878Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2266616..2266878 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815264.6699567-UTR-P-fluviatile_contig1:2266878..22668941622815264.6699567-UTR-P-fluviatile_contig1:2266878..2266894Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2266879..2266894 -
1693561272.5526733-UTR-P-fluviatile_contig1:2266878..22668941693561272.5526733-UTR-P-fluviatile_contig1:2266878..2266894Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2266879..2266894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.176.1

>prot_P-fluviatile_contig1.176.1 ID=prot_P-fluviatile_contig1.176.1|Name=mRNA_P-fluviatile_contig1.176.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=144bp
MSQRKYCWWVFIYLAILLARGGAFLTPTCSTANTVDRARRPPARTEVMAV
SPGEADAPGQWSPVRDTGKGHGDDNNNEEKDFKFNLARAKDYLWTDVPLM
FDAPPRLEIFTSEIRLKIGCSRVLASARCACSPATIPPPTKSEG
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mRNA from alignment at P-fluviatile_contig1:2265672..2266894-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.176.1 ID=mRNA_P-fluviatile_contig1.176.1|Name=mRNA_P-fluviatile_contig1.176.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1223bp|location=Sequence derived from alignment at P-fluviatile_contig1:2265672..2266894- (Porterinema fluviatile SAG_2381)
AAGTAACTGAGCAACGATGAGTCAACGTAAATACTGCTGGTGGGTTTTTA
TATATCTGGCCATTCTTCTCGCCCGGGGGGGCGCTTTCCTGACCCCTACT
TGCAGCACAGCTAACACTGTCGACCGCGCACGCCGTCCGCCCGCACGGAC
GGAGGTTATGGCCGTGTCGCCGGGGGAGGCCGATGCCCCTGGGCAGTGGT
CGCCGGTGCGAGACACAGGGAAAGGGCATGGTGACGACAACAACAACGAA
GAAAAGGACTTCAAATTCAACTTGGCAAGGTGTGCAGTCTCTATAGATAG
ATCGACTGTTCAAAAAAACATGACACAGCGCCAACAGAGCACGCAGCGAG
CAAGGTAGAGCGAGAGCGAGGGAGTCAAACTGCTTCGTCGATACTTTTGA
AAGAAAACAGTCCCCCACTACCTGTTGCCGTCGAATGTTGTCAGCGGTAC
TGATGATGATACCGCGCGCGCGTGTTGATTATTATACGACGTTGTGCGAT
CATCTTCATCCGACCCCCACACACATCGCGCGCGATTCTTATCCACGACG
TTATTTGCCAGGGCCAAGGACTACCTTTGGACGGATGTTCCCCTCATGTT
CGACGCGCCCCCTCGGCTGGAAATATTTACCAGCGAAATCCGCCTGAAGG
TGAGTTTTGTAAGGCTGCGCTATTGAGAACGTTCGTCATCGGCGTTTCGC
TCTTGTCGGCACCGCAATCTGCGGATTAACTTCAGCCGATGCCTTTCGGG
GTCTGAGGCAGCAGGGGGCGTGTCGAGCACCAATGAGCTTGAGGACAACG
TGAGTTAGTCCAACGGTAAACATCCGCCGGATGCCGACCTGTTCTTGCTT
GGGACGCACCTTGTTTTTGTGGAAGTCGAAAAACGCAAAGTTTGACTTGG
AAACATCTAGTCCATATCCGTTTCTGTAAAAGCGTGAGAATTTCCGCACG
CGCACCCACAACTACACGAACAACCGCTGACCGGGACTTTACAGCAGCAG
CTCAAGCCTCCGCCTGAGAACCCCGTCTTCCATTGAGCTGCCGAAGCCGA
CAGCAAATGGGTGTGCCTTCGCCGGTAACTGTGCCCCAAGTTTTTCTGAA
CTACCCCAGTCTCTCCATCTTGTGCCTTGTCCCGCGGCACAGATCGGCTG
CAGTCGTGTGCTCGCCTCAGCGCGTTGCGCCTGCTCTCCGGCGACTATTC
CTCCCCCTACCAAGAGCGAGGGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:2265672..2266894-

>mRNA_P-fluviatile_contig1.176.1 ID=mRNA_P-fluviatile_contig1.176.1|Name=mRNA_P-fluviatile_contig1.176.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=864bp|location=Sequence derived from alignment at P-fluviatile_contig1:2265672..2266894- (Porterinema fluviatile SAG_2381)
ATGAGTCAACGTAAATACTGCTGGTGGGTTTTTATATATCTGGCCATTCT
TCTCGCCCGGGGGGGCGCTTTCCTGACCCCTACTTGCAGCACAGCTAACA
CTGTCGACCGCGCACGCCGTCCGCCCGCACGGACGGAGGTTATGGCCGTG
TCGCCGGGGGAGGCCGATGCCCCTGGGCAGTGGTCGCCGGTGCGAGACAC
AGGGAAAGGGCATGGTGACGACAACAACAACGAAGAAAAGGACTTCAAAT
TCAACTTGGCAAGATGAGTCAACGTAAATACTGCTGGTGGGTTTTTATAT
ATCTGGCCATTCTTCTCGCCCGGGGGGGCGCTTTCCTGACCCCTACTTGC
AGCACAGCTAACACTGTCGACCGCGCACGCCGTCCGCCCGCACGGACGGA
GGTTATGGCCGTGTCGCCGGGGGAGGCCGATGCCCCTGGGCAGTGGTCGC
CGGTGCGAGACACAGGGAAAGGGCATGGTGACGACAACAACAACGAAGAA
AAGGACTTCAAATTCAACTTGGCAAGGGCCAAGGACTACCTTTGGACGGA
TGTTCCCCTCATGTTCGACGCGCCCCCTCGGCTGGAAATATTTACCAGCG
AAATCCGCCTGAAGGGCCAAGGACTACCTTTGGACGGATGTTCCCCTCAT
GTTCGACGCGCCCCCTCGGCTGGAAATATTTACCAGCGAAATCCGCCTGA
AGATCGGCTGCAGTCGTGTGCTCGCCTCAGCGCGTTGCGCCTGCTCTCCG
GCGACTATTCCTCCCCCTACCAAGAGCGAGGGAATCGGCTGCAGTCGTGT
GCTCGCCTCAGCGCGTTGCGCCTGCTCTCCGGCGACTATTCCTCCCCCTA
CCAAGAGCGAGGGA
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