mRNA_P-fluviatile_contig1.170.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig1.170.1 vs. uniprot
Match: D8LN65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN65_ECTSI) HSP 1 Score: 310 bits (793), Expect = 1.370e-97 Identity = 161/291 (55.33%), Postives = 201/291 (69.07%), Query Frame = 1
Query: 358 LVVEKYVNPVRNDQLPEDEETFWIVKYQPNGERDEVKHFMYLRFSSTAGAVYGIGYEEARKLCKISGKYRLNKRAKQTAITLECKFSNECDTVLFHGCGNGTGILGNCYVREINPFSMLAGFPGVRRMSSDKYKGSFLMLKQSGMGDPSLRSRLHTRRVHKWARECYPDNSEPMPVSPLHSPGRA--------SSGGRG------YAPVDALGNNSSG-----LASELASPLPSSRKQSGRRGNAGGVGKKIRRIFHRRKLSAEVG-QSRPTGGSTRADGAGTIPPWVKPG 1170
LV KY +P+R D +PED+ET W VKYQPNGER EV +MYLRF G V+G+GYEE+RKLCKI+GKY+LN R QTA+ L+CKFSNECDTVLFHG GNGTG++GNCY+REI+PFS +G PG+R++S DKYKGSFLMLKQSGMG LRS +HTRRVHKWA C+PD+S PMP SP+ SPG SS GRG Y+PV+ G+ G A A P + Q G + +GKKIRR+FHR++ + ++ Q R + STR +G +PPWV+ G
Sbjct: 2 LVNSKYEDPIRTDSIPEDQETLWRVKYQPNGERSEVTQYMYLRFRR-GGNVHGVGYEESRKLCKITGKYKLNARTNQTALALQCKFSNECDTVLFHGWGNGTGLVGNCYIREIDPFSAFSGIPGIRQLSRDKYKGSFLMLKQSGMGGAKLRSMVHTRRVHKWAGACFPDDSVPMPQSPMRSPGATPRSGITPKSSRGRGAGRENGYSPVEGQGSTRGGRGRRGFARSTARPGSPATSQGGSN-KSDSLGKKIRRLFHRKRPTLDIQLQDRTSDWSTRGSTSGEVPPWVRQG 290
BLAST of mRNA_P-fluviatile_contig1.170.1 vs. uniprot
Match: A0A6H5KY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY23_9PHAE) HSP 1 Score: 202 bits (514), Expect = 2.530e-58 Identity = 100/187 (53.48%), Postives = 129/187 (68.98%), Query Frame = 1
Query: 157 VPPYVTILGTNIPTGFIMV---GGLLAGFIIIGCLCVKCTKAKRPTVGESFKWPNSSRFLKRVDPAHPPPLVVEKYVNPVRNDQLPEDEETFWIVKYQPNGERDEVKHFMYLRFSSTAGAVYGIGYEEARKLCKISGKYRLNKRAKQTAITLECKFSNECDTVLFHGCGNGTGILGNCYVREINPFS 708
VP V + G ++PT + V GLLA + + C C K ++ P ESFKWP+SSRFLK VDP +PP L V +Y +P+R D L DEE WIV YQP+G R E+ MYLRF GAVYG+G+EE RK CKISGKY+ N+ A Q A+ + C+FSN+ DTV+FHG GNGTG++GNCY+RE++ FS
Sbjct: 7 VPDTVNVFGVDVPTFALAVFFGAGLLA--VCVFCCCSKHCGSEDPPTSESFKWPSSSRFLKMVDPRNPPKLFVNRYEDPIRTDVLVLDEEANWIVTYQPSGGRHEIVQHMYLRFRE--GAVYGVGFEEGRKACKISGKYKRNEGANQMAVVMTCRFSNDVDTVMFHGSGNGTGLVGNCYIRELDRFS 189
BLAST of mRNA_P-fluviatile_contig1.170.1 vs. uniprot
Match: D8LAZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ0_ECTSI) HSP 1 Score: 177 bits (450), Expect = 8.110e-48 Identity = 122/310 (39.35%), Postives = 155/310 (50.00%), Query Frame = 1
Query: 313 SSRFLKRVDPAHPPPLVVEKYVNPVRNDQLPEDEETFWIVKYQPNGERDEVKHFMYLRFSSTAGAVYGIGYEEARKLCKISGKYRLNKRAKQTAITLECKFSNECDTVLFHGCGNGTGILGNCYVREINPFSMLAGFPGVRRMSSDKYKGSFLMLKQSGMGDPSLRSRLHTRRVHKWARECYPDNSEPMPVSPLHSPGRA------SSGGRGYAPVDALGNNSSGLASELASPLPSSRKQSGR------RGNAGGVGKKIRRI------FHRRKLSAEVGQSRPTGGSTRADGAGT-----IPPWVKPGG 1173
SSRFLK VDP +PP L V KY +P+R D L DEE WIV YQP+G R EV MYLRF GAVYG+G+EE RK CKISGKY+ N+ A Q A+ + C+ S PG+R M + KYK SFLMLK G+GD +R+RLHT RV KWA YPD++ P+P S S G A S G + D LG A+ ++ SR++ G RG G G ++++ F RR+ + V P G + A T +PPWV GG
Sbjct: 3 SSRFLKTVDPRNPPKLFVNKYEDPIRTDVLVLDEEANWIVTYQPSGGRYEVVQHMYLRFRE--GAVYGVGFEEGRKACKISGKYKRNEGANQVAVVMTCRSS-----------------------------------PGLRNMGATKYKASFLMLKMEGIGDTHIRARLHTSRVQKWAGNLYPDDAIPLPASNKRSSGGARRGEETSPGAEPFVSDDDLGGIGRPRATSSSTRRALSRRRQGSDSVASGRGGDGSGGMSMKKVLGYLPSFGRRRSRSSV----PPGPTPPASAHSTTSTNELPPWVLTGG 271 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.170.1 >prot_P-fluviatile_contig1.170.1 ID=prot_P-fluviatile_contig1.170.1|Name=mRNA_P-fluviatile_contig1.170.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=394bp MGNYISSVPPYVTILGTNIPTGFIMVGGLLAGFIIIGCLCVKCTKAKRPTback to top mRNA from alignment at P-fluviatile_contig1:2196445..2208293- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig1.170.1 ID=mRNA_P-fluviatile_contig1.170.1|Name=mRNA_P-fluviatile_contig1.170.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=11849bp|location=Sequence derived from alignment at P-fluviatile_contig1:2196445..2208293- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig1:2196445..2208293- >mRNA_P-fluviatile_contig1.170.1 ID=mRNA_P-fluviatile_contig1.170.1|Name=mRNA_P-fluviatile_contig1.170.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2364bp|location=Sequence derived from alignment at P-fluviatile_contig1:2196445..2208293- (Porterinema fluviatile SAG_2381)back to top |