mRNA_P-fluviatile_contig1.164.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.164.1
Unique NamemRNA_P-fluviatile_contig1.164.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2133633..2134111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.1102366-CDS-P-fluviatile_contig1:2133632..21341091622815269.1102366-CDS-P-fluviatile_contig1:2133632..2134109Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2133633..2134109 +
1693561319.4159229-CDS-P-fluviatile_contig1:2133632..21341091693561319.4159229-CDS-P-fluviatile_contig1:2133632..2134109Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2133633..2134109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.164.1prot_P-fluviatile_contig1.164.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2133633..2134109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.164.1

>prot_P-fluviatile_contig1.164.1 ID=prot_P-fluviatile_contig1.164.1|Name=mRNA_P-fluviatile_contig1.164.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=159bp
GQQSRDKTASCIACRLRSCVLSAHGRHSNSSLARDTPFIGDALVSPAVPL
LRCFPFCSAHGRHYNSSRDAAVFRSSSRRVRFCSTETPDLPSTGSHHFTR
GDRRKLFQSYAQKGKTNSSPSTDAVVPVLLRSESQTQTSNAILLIFFVIF
ASSMARGTR
back to top

mRNA from alignment at P-fluviatile_contig1:2133633..2134111+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.164.1 ID=mRNA_P-fluviatile_contig1.164.1|Name=mRNA_P-fluviatile_contig1.164.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=479bp|location=Sequence derived from alignment at P-fluviatile_contig1:2133633..2134111+ (Porterinema fluviatile SAG_2381)
GGGCAACAATCGCGTGATAAAACCGCTTCATGCATTGCCTGTCGCTTGCG
GTCCTGCGTTTTGTCTGCACACGGACGGCACTCCAACAGCTCTCTCGCGC
GCGATACCCCTTTTATCGGTGATGCCCTTGTCTCTCCTGCGGTACCGCTC
CTCCGGTGCTTCCCTTTTTGCTCAGCACACGGACGGCACTACAACAGCTC
TAGAGATGCTGCCGTCTTCCGGTCATCGTCCCGTCGCGTTCGGTTTTGCT
CGACAGAGACACCCGACCTTCCCTCCACTGGATCACACCACTTTACCCGA
GGAGACCGAAGGAAACTCTTTCAGTCGTACGCCCAAAAAGGGAAGACAAA
TTCGTCTCCGTCGACTGACGCAGTAGTCCCCGTTCTGCTCAGATCAGAGT
CTCAGACACAAACTTCGAACGCAATCCTACTGATCTTTTTTGTTATTTTT
GCTTCGAGCATGGCCAGGGGTACTCGCTG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:2133633..2134111+

>mRNA_P-fluviatile_contig1.164.1 ID=mRNA_P-fluviatile_contig1.164.1|Name=mRNA_P-fluviatile_contig1.164.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=954bp|location=Sequence derived from alignment at P-fluviatile_contig1:2133633..2134111+ (Porterinema fluviatile SAG_2381)
GGGCAACAATCGCGTGATAAAACCGCTTCATGCATTGCCTGTCGCTTGCG
GTCCTGCGTTTTGTCTGCACACGGACGGCACTCCAACAGCTCTCTCGCGC
GCGATACCCCTTTTATCGGTGATGCCCTTGTCTCTCCTGCGGTACCGCTC
CTCCGGTGCTTCCCTTTTTGCTCAGCACACGGACGGCACTACAACAGCTC
TAGAGATGCTGCCGTCTTCCGGTCATCGTCCCGTCGCGTTCGGTTTTGCT
CGACAGAGACACCCGACCTTCCCTCCACTGGATCACACCACTTTACCCGA
GGAGACCGAAGGAAACTCTTTCAGTCGTACGCCCAAAAAGGGAAGACAAA
TTCGTCTCCGTCGACTGACGCAGTAGTCCCCGTTCTGCTCAGATCAGAGT
CTCAGACACAAACTTCGAACGCAATCCTACTGATCTTTTTTGTTATTTTT
GCTTCGAGCATGGCCAGGGGTACTCGCGGGCAACAATCGCGTGATAAAAC
CGCTTCATGCATTGCCTGTCGCTTGCGGTCCTGCGTTTTGTCTGCACACG
GACGGCACTCCAACAGCTCTCTCGCGCGCGATACCCCTTTTATCGGTGAT
GCCCTTGTCTCTCCTGCGGTACCGCTCCTCCGGTGCTTCCCTTTTTGCTC
AGCACACGGACGGCACTACAACAGCTCTAGAGATGCTGCCGTCTTCCGGT
CATCGTCCCGTCGCGTTCGGTTTTGCTCGACAGAGACACCCGACCTTCCC
TCCACTGGATCACACCACTTTACCCGAGGAGACCGAAGGAAACTCTTTCA
GTCGTACGCCCAAAAAGGGAAGACAAATTCGTCTCCGTCGACTGACGCAG
TAGTCCCCGTTCTGCTCAGATCAGAGTCTCAGACACAAACTTCGAACGCA
ATCCTACTGATCTTTTTTGTTATTTTTGCTTCGAGCATGGCCAGGGGTAC
TCGC
back to top