mRNA_P-fluviatile_contig1.157.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.157.1
Unique NamemRNA_P-fluviatile_contig1.157.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2065861..2066901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size446
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815264.2402463-CDS-P-fluviatile_contig1:2065862..20658891622815264.2402463-CDS-P-fluviatile_contig1:2065862..2065889Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2065863..2065889 -
1693561269.0890663-CDS-P-fluviatile_contig1:2065862..20658891693561269.0890663-CDS-P-fluviatile_contig1:2065862..2065889Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2065863..2065889 -
1622815264.2539601-CDS-P-fluviatile_contig1:2066484..20669011622815264.2539601-CDS-P-fluviatile_contig1:2066484..2066901Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2066485..2066901 -
1693561269.253721-CDS-P-fluviatile_contig1:2066484..20669011693561269.253721-CDS-P-fluviatile_contig1:2066484..2066901Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2066485..2066901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.157.1prot_P-fluviatile_contig1.157.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2065863..2066901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.157.1

>prot_P-fluviatile_contig1.157.1 ID=prot_P-fluviatile_contig1.157.1|Name=mRNA_P-fluviatile_contig1.157.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=148bp
PGYDYEIIEATSLLCFPANLRLYRRAHTHAHATVHMMAPRAFSTSPRASW
KGYCGVAALLAFAAAGGFGFGLALRAAVSYDPTRNGSSRRARAEPGQRAG
AAGTIALNDVGAPAAGADTGGHDFKAMQEQRTLQYFNPEGGSLLKRYT
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mRNA from alignment at P-fluviatile_contig1:2065861..2066901-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.157.1 ID=mRNA_P-fluviatile_contig1.157.1|Name=mRNA_P-fluviatile_contig1.157.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1041bp|location=Sequence derived from alignment at P-fluviatile_contig1:2065861..2066901- (Porterinema fluviatile SAG_2381)
CCTGGATATGACTATGAAATCATTGAAGCAACCTCTCTCCTCTGTTTCCC
TGCGAATCTTCGGCTCTACCGCCGAGCTCACACACACGCGCACGCCACTG
TGCACATGATGGCTCCCCGGGCTTTCTCCACCTCGCCGAGGGCTTCATGG
AAAGGCTACTGTGGCGTAGCAGCTCTCCTCGCCTTTGCCGCAGCCGGCGG
GTTTGGGTTTGGCTTGGCTCTGAGGGCAGCAGTATCCTACGATCCGACGC
GGAATGGCTCGAGCCGGAGAGCCCGCGCGGAACCGGGACAGCGGGCGGGT
GCAGCAGGCACAATAGCGTTGAATGATGTGGGTGCTCCTGCTGCTGGTGC
GGACACTGGAGGTCATGATTTCAAAGCGATGCAAGAGCAGCGAACGTTGC
AATATTTCAATCCCGAGGTGATTGTGAGAGAGGGGGGCAACCCTTTCCAG
ATGGAAAAGTGGCAGCATCTAATCTATGCTGCTAATAATTCCGCAACGTT
TGTTTTACACACATATCATAGCCCTCACACGCCATGCAAATGACAAGGTA
CTGTCCGACCGATTCCGCGACCATGCGTCGGTCCTTTTTTTATCGAGCGA
CGTTCCGACACGCTGAATTGGGTAGACTATCTATGGCCTTTTATCATCTC
GGGTCCTCAGCACCTCCTGTTCGCTATTATTAGTAGCTGCTAGCCTCGCC
GAGGAGGGCGCGTTCACCCTTCTGTATCCGAATTTCATACTTGTCACACA
GATAGGGCTCTATTGTTTTACTGGAGGCCGACGTTTACATCCCTTGGACC
TCCCGCCGAAGTCGACGGAAGTTTAAAGTCACACGTAGCTCAGATGCTGT
ACACCGGCAAATCGCGCAGCCCATAGTGTCTGCAGTGATGGCCCTTCACT
CGGTAGAGCAGAGCCACAAAGGCGTGCGGCAAAGGCTGGACTTTTCGAAT
GGACTCTGCACGTGTGCGGCGTTGCGGCAACACCGGGAAATGGTGGCTCA
TTTGTGCTTCAGGGAGGGAGCCTGCTAAAGCGGTACACGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:2065861..2066901-

>mRNA_P-fluviatile_contig1.157.1 ID=mRNA_P-fluviatile_contig1.157.1|Name=mRNA_P-fluviatile_contig1.157.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=888bp|location=Sequence derived from alignment at P-fluviatile_contig1:2065861..2066901- (Porterinema fluviatile SAG_2381)
CCTGGATATGACTATGAAATCATTGAAGCAACCTCTCTCCTCTGTTTCCC
TGCGAATCTTCGGCTCTACCGCCGAGCTCACACACACGCGCACGCCACTG
TGCACATGATGGCTCCCCGGGCTTTCTCCACCTCGCCGAGGGCTTCATGG
AAAGGCTACTGTGGCGTAGCAGCTCTCCTCGCCTTTGCCGCAGCCGGCGG
GTTTGGGTTTGGCTTGGCTCTGAGGGCAGCAGTATCCTACGATCCGACGC
GGAATGGCTCGAGCCGGAGAGCCCGCGCGGAACCGGGACAGCGGGCGGGT
GCAGCAGGCACAATAGCGTTGAATGATGTGGGTGCTCCTGCTGCTGGTGC
GGACACTGGAGGTCATGATTTCAAAGCGATGCAAGAGCAGCGAACGTTGC
AATATTTCAATCCCGAGCCTGGATATGACTATGAAATCATTGAAGCAACC
TCTCTCCTCTGTTTCCCTGCGAATCTTCGGCTCTACCGCCGAGCTCACAC
ACACGCGCACGCCACTGTGCACATGATGGCTCCCCGGGCTTTCTCCACCT
CGCCGAGGGCTTCATGGAAAGGCTACTGTGGCGTAGCAGCTCTCCTCGCC
TTTGCCGCAGCCGGCGGGTTTGGGTTTGGCTTGGCTCTGAGGGCAGCAGT
ATCCTACGATCCGACGCGGAATGGCTCGAGCCGGAGAGCCCGCGCGGAAC
CGGGACAGCGGGCGGGTGCAGCAGGCACAATAGCGTTGAATGATGTGGGT
GCTCCTGCTGCTGGTGCGGACACTGGAGGTCATGATTTCAAAGCGATGCA
AGAGCAGCGAACGTTGCAATATTTCAATCCCGAGGGAGGGAGCCTGCTAA
AGCGGTACACGGGAGGGAGCCTGCTAAAGCGGTACACG
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