mRNA_P-fluviatile_contig1.153.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.153.1
Unique NamemRNA_P-fluviatile_contig1.153.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.153.1 vs. uniprot
Match: A0A6H5K6Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 6.960e-12
Identity = 58/135 (42.96%), Postives = 67/135 (49.63%), Query Frame = 1 
Query:  214 MVQKWAIGAMINISGSVAINLGTNLMKLSHKMETGEVTHLQPDGTKNSLRSAQAPSSTRTPTADSESADLEADVVVPVRRSRQ-----------------YFPSSRGMKNTRTPGVEMTAAYSAVAVVAGDAEPG 567
            MVQKWAIG MINISGS+AINLGTNLMKLSHKM+ GE      D T N+          R+    S+  DLEA   +  R +                   +FPSS         GVEMTA Y A A+V     PG
Sbjct:    1 MVQKWAIGTMINISGSIAINLGTNLMKLSHKMKKGEYRQHGDDNTSNNA--------IRSGLKSSDDDDLEAAEPMINREANDSXXXXXXXXXXXXXXXHFFPSSLRSAKGAQHGVEMTA-YPADALVQERGGPG 126
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BLAST of mRNA_P-fluviatile_contig1.153.1 vs. uniprot
Match: D7G9H4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H4_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.020e-11
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:  214 MVQKWAIGAMINISGSVAINLGTNLMKLSHKMETGEVTHLQPDGTKNS-LRSAQAPS 381
            MVQKWAIGAMINISGS+AINLGTNLMKLSHKM+ GE      D T N+ +RS   PS
Sbjct:    1 MVQKWAIGAMINISGSIAINLGTNLMKLSHKMKKGEYRQHGDDNTSNNAIRSGLKPS 57
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6Y8_9PHAE6.960e-1242.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9H4_ECTSI1.020e-1170.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2007314..2008841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue4.2e-11
Seed eggNOG ortholog2880.D7G9H4
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0012505,GO:0015693,GO:0016020,GO:0030001,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0070838,GO:0071944,GO:0072511,GO:0097708
EggNOG free text desc.magnesium ion transmembrane transporter activity
EggNOG OGsKOG2922@1,KOG2922@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size608
Cds size606
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.153.1prot_P-fluviatile_contig1.153.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2007315..2008841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815264.182593-CDS-P-fluviatile_contig1:2007314..20076141622815264.182593-CDS-P-fluviatile_contig1:2007314..2007614Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2007315..2007614 -
1693561263.2898266-CDS-P-fluviatile_contig1:2007314..20076141693561263.2898266-CDS-P-fluviatile_contig1:2007314..2007614Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2007315..2007614 -
1622815264.1933537-CDS-P-fluviatile_contig1:2008099..20082521622815264.1933537-CDS-P-fluviatile_contig1:2008099..2008252Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2008100..2008252 -
1693561268.490837-CDS-P-fluviatile_contig1:2008099..20082521693561268.490837-CDS-P-fluviatile_contig1:2008099..2008252Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2008100..2008252 -
1622815264.2043674-CDS-P-fluviatile_contig1:2008688..20088411622815264.2043674-CDS-P-fluviatile_contig1:2008688..2008841Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2008689..2008841 -
1693561268.9425914-CDS-P-fluviatile_contig1:2008688..20088411693561268.9425914-CDS-P-fluviatile_contig1:2008688..2008841Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2008689..2008841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.153.1

>prot_P-fluviatile_contig1.153.1 ID=prot_P-fluviatile_contig1.153.1|Name=mRNA_P-fluviatile_contig1.153.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=202bp
SLDTPRRYISPCRLRHSTIYSIKRPLFGHADRSNSFSFLSLRKHLWVFLP
QVPCFQLFRRQGRGGSGVADNMVQKWAIGAMINISGSVAINLGTNLMKLS
HKMETGEVTHLQPDGTKNSLRSAQAPSSTRTPTADSESADLEADVVVPVR
RSRQYFPSSRGMKNTRTPGVEMTAAYSAVAVVAGDAEPGGLAGGAGSGPV
RC
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mRNA from alignment at P-fluviatile_contig1:2007314..2008841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.153.1 ID=mRNA_P-fluviatile_contig1.153.1|Name=mRNA_P-fluviatile_contig1.153.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1528bp|location=Sequence derived from alignment at P-fluviatile_contig1:2007314..2008841- (Porterinema fluviatile SAG_2381)
TCACTTGATACACCTCGCCGGTACATATCACCTTGCCGACTGCGACACTC
AACAATCTACTCGATTAAGCGTCCACTGTTCGGCCACGCTGATCGTTCGA
ATAGCTTCTCCTTCTTGAGCCTTCGCAAACACTTGTGGGTGTTTCTTCCG
CAGGTTGTGTCCTGAACGCGGGTTGATTGATGTGGTGTGTAAGCGCGGGG
TCGAGAGAGCGGTGCAGGTGTACGACGCCTGCCTACCGCCTGCATTATAC
CCAGAGCACGTTCAGTTGTTGTTGCCGGGATGGCGGAATTCAAATCGTCT
GTTTTCAAATTCCTTGCATCCAAAAAAATCCGGGATTCTTGTTAGTTGAG
AGTTGCTGCGGTTGTGCGGTTGTACACGAGTTTTTTTACTCCGTACACAA
GCAGGCCCTCAACAGCCGTGGCTGCTTTAGTTCCACCTTTGGTCAATCTT
ACTACTCTGCAGCAAGTATAGAGATTCTCGAAGCGGTCAGGAATTCTGCT
CTGAAGCAGAATTCCGGCATAAAAGCCGCCATCGCCCCTGTTGTTGAAAA
ACCAACTGCTTCGTTCGGTTGCCGCACTTCGTGTAACAGGTGCCGTGTTT
CCAACTGTTTCGTCGGCAGGGGCGGGGAGGGAGCGGGGTTGCCGACAATA
TGGTGCAGAAATGGGCCATCGGCGCCATGATTAACATCTCGGGCTCCGTT
GCCATCAACCTGGGCACAAACCTGATGAAGCTTTCGCACAAGGTGAAAAT
TCGGCCCCCCGCCGCGCGTCAAACTTTTGGTTTGTCTCGTCAAACTTACT
AATAGCACGTATTATAGCGCGTCCTCTGATGACACTTTGTACAGACTTGT
GCAGACACTAGACGGGATTGGTAGCAAGTGCAGCAGCAATCGCTGTCCCG
GTTTAGAAGTTTACGGTATCACGTGAGGTTATGGACACTATATAGGGCCA
TCGGCGCTGCTACACAGGGAACCGCTAAATTACGACTGCTGCATGAAGTT
CGGTGTCCAGACTGCTGCTGTGGGGCATGACATGACAGCCAACTTGCGTA
GAGCGGAAAGGCAGTTGCCCACCTGTGGTATGCTTCTGAAAAACGCTGTC
GGAGTTCACACATCGACAGCTTTCTCCCCAGCGAAATGTGCATTGACATG
ACGTAAGGTGATAGAAAACGTCTGCTTTCTCGCACACAGACGTCTGCCTG
TTCTGCGCACTCTTTCATGACGGCCAGATGGAGACGGGCGAAGTGACGCA
TCTACAGCCAGACGGGACGAAGAATTCCCTCAGATCGGCGCAAGCGCCCT
CCTCGACCAGAACACCCACCGCCGACTCAGAATCCGCCGATTTAGAGGCC
GATGTAGTCGTCCCCGTTCGGCGAAGCCGTCAGTACTTTCCCTCCTCCAG
GGGCATGAAGAATACCCGGACACCCGGGGTGGAGATGACCGCCGCCTACT
CGGCGGTCGCGGTGGTCGCCGGAGACGCGGAGCCTGGCGGCTTAGCAGGC
GGCGCCGGTTCAGGACCCGTGCGGTGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:2007314..2008841-

>mRNA_P-fluviatile_contig1.153.1 ID=mRNA_P-fluviatile_contig1.153.1|Name=mRNA_P-fluviatile_contig1.153.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1212bp|location=Sequence derived from alignment at P-fluviatile_contig1:2007314..2008841- (Porterinema fluviatile SAG_2381)
TCACTTGATACACCTCGCCGGTACATATCACCTTGCCGACTGCGACACTC
AACAATCTACTCGATTAAGCGTCCACTGTTCGGCCACGCTGATCGTTCGA
ATAGCTTCTCCTTCTTGAGCCTTCGCAAACACTTGTGGGTGTTTCTTCCG
CAGTCACTTGATACACCTCGCCGGTACATATCACCTTGCCGACTGCGACA
CTCAACAATCTACTCGATTAAGCGTCCACTGTTCGGCCACGCTGATCGTT
CGAATAGCTTCTCCTTCTTGAGCCTTCGCAAACACTTGTGGGTGTTTCTT
CCGCAGGTGCCGTGTTTCCAACTGTTTCGTCGGCAGGGGCGGGGAGGGAG
CGGGGTTGCCGACAATATGGTGCAGAAATGGGCCATCGGCGCCATGATTA
ACATCTCGGGCTCCGTTGCCATCAACCTGGGCACAAACCTGATGAAGCTT
TCGCACAAGGTGCCGTGTTTCCAACTGTTTCGTCGGCAGGGGCGGGGAGG
GAGCGGGGTTGCCGACAATATGGTGCAGAAATGGGCCATCGGCGCCATGA
TTAACATCTCGGGCTCCGTTGCCATCAACCTGGGCACAAACCTGATGAAG
CTTTCGCACAAGATGGAGACGGGCGAAGTGACGCATCTACAGCCAGACGG
GACGAAGAATTCCCTCAGATCGGCGCAAGCGCCCTCCTCGACCAGAACAC
CCACCGCCGACTCAGAATCCGCCGATTTAGAGGCCGATGTAGTCGTCCCC
GTTCGGCGAAGCCGTCAGTACTTTCCCTCCTCCAGGGGCATGAAGAATAC
CCGGACACCCGGGGTGGAGATGACCGCCGCCTACTCGGCGGTCGCGGTGG
TCGCCGGAGACGCGGAGCCTGGCGGCTTAGCAGGCGGCGCCGGTTCAGGA
CCCGTGCGGTGCATGGAGACGGGCGAAGTGACGCATCTACAGCCAGACGG
GACGAAGAATTCCCTCAGATCGGCGCAAGCGCCCTCCTCGACCAGAACAC
CCACCGCCGACTCAGAATCCGCCGATTTAGAGGCCGATGTAGTCGTCCCC
GTTCGGCGAAGCCGTCAGTACTTTCCCTCCTCCAGGGGCATGAAGAATAC
CCGGACACCCGGGGTGGAGATGACCGCCGCCTACTCGGCGGTCGCGGTGG
TCGCCGGAGACGCGGAGCCTGGCGGCTTAGCAGGCGGCGCCGGTTCAGGA
CCCGTGCGGTGC
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