mRNA_P-fluviatile_contig1.15.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.15.1
Unique NamemRNA_P-fluviatile_contig1.15.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:199191..203060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size275
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.15.1prot_P-fluviatile_contig1.15.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 199191..203058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815262.7699487-CDS-P-fluviatile_contig1:199190..1993111622815262.7699487-CDS-P-fluviatile_contig1:199190..199311Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 199191..199311 +
1693561236.839805-CDS-P-fluviatile_contig1:199190..1993111693561236.839805-CDS-P-fluviatile_contig1:199190..199311Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 199191..199311 +
1622815262.7805226-CDS-P-fluviatile_contig1:199849..1999761622815262.7805226-CDS-P-fluviatile_contig1:199849..199976Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 199850..199976 +
1693561240.1568515-CDS-P-fluviatile_contig1:199849..1999761693561240.1568515-CDS-P-fluviatile_contig1:199849..199976Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 199850..199976 +
1622815262.790944-CDS-P-fluviatile_contig1:203033..2030581622815262.790944-CDS-P-fluviatile_contig1:203033..203058Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 203034..203058 +
1693561240.4330425-CDS-P-fluviatile_contig1:203033..2030581693561240.4330425-CDS-P-fluviatile_contig1:203033..203058Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 203034..203058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.15.1

>prot_P-fluviatile_contig1.15.1 ID=prot_P-fluviatile_contig1.15.1|Name=mRNA_P-fluviatile_contig1.15.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=91bp
CVSTEERIRRKATPLPAAGDCHSFLSRARTSHVSAHGRRQVASRTDSSAV
TTSIAIAKRQPTPLSEINEQRPRAGKRDRGRLSRGGFKSNG
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mRNA from alignment at P-fluviatile_contig1:199191..203060+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.15.1 ID=mRNA_P-fluviatile_contig1.15.1|Name=mRNA_P-fluviatile_contig1.15.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3870bp|location=Sequence derived from alignment at P-fluviatile_contig1:199191..203060+ (Porterinema fluviatile SAG_2381)
TGTGTTTCCACCGAGGAACGGATAAGAAGAAAAGCAACCCCGCTTCCAGC
TGCCGGCGATTGCCACTCTTTTCTCTCGCGCGCTCGGACCTCTCACGTAT
CTGCACACGGTAGACGGCAAGGTGAGCCTTGAACCCCGGACCCGCGGTGT
TGTGTCATGTTTCGCTGTGTTTTCTTCGCAAAGCGCACGGCATTTCTCGT
TCAGAGAGGAGGATTAGTCTAGTGTACTTGTATAAGTTCAAGTCATTTTG
TTGATGCGGCCCCATCTGTCACACGGCAACCCATCGTGCTAACTTTCCAT
TCCTTTGGCGCACGTAATATACGCCGCAGCCCGCGAACTTAGCACGAGCA
GCTTCACAGACCACCGTCCGGATGATTGATTGCGAAGTTCCCTACATCCT
ACTGAAATAGTGTGCTGTGTGAGCACATCTGCGCTGACAATTTTTCATGA
GCACGCACATCTCACATTTGTATGCAACAATGGACAGATGTGAAGAGTCG
CGAAGTGCATGTGATTTTCTGCTCTGTGCACACGACATGAAAATGCAAAG
ACAGCAATGAACGCGCGCCTTTGCCTTCCCTTTGTTTTATTTCCGTTCTC
TCTACCTCTGCATTGGCCATGGTTACTTGGCTATGCTGCCTTTCTTTGTG
GGAGTGCAGTAGCAAGCCGCACCGATTCGAGCGCCGTCACCACCAGCATT
GCCATCGCCAAAAGACAACCTACTCCCCTATCAGAGATCAACGAGCAGCG
GCCTAGGGCTGGCAAGCGGGATCGAGGCCGACTGAGGTTAGTGCCATCGA
GGGTCTCATTGTGACCCTTCAATCAATTCCTACCGTCTTCGGCAGTTTTC
GAAGGTCGAAAATTTCGTCGTCGGTGCATACTTTGAGTGTGACGTTGCGC
AGAAAGTCAAACTCAGTAGAGCGCTGTGCATTCGACACGTGTGCACGGAA
CCATCTTCATCAGGTCGTTCTTACGGTGCATTTTCTTGTTACGTCTGGTG
TAGAAATCCAACATGTCAATCCTGCTGTCAAATACACCCAAGTTTAGCAG
CCGATTCTTACGCTTGATCACCCTTGACATCAAACTTTGCGGGGAAAAGG
GCTCTTCAAATTCCAAGTTGGTGACACACCTACCGATTGCGACGTGAACT
GCTGTGACCACAGCGCGCTCATCAAGGGTGCCGAGCATCTGCTCTGCTGA
TCTAGTGGTTCATCACCGCCGGTTGCTCGTCAGGCGCGCGAAGCAAAACA
TTGTGGTCGCAGCCACTCACCAGAAGAGGCCATATCGTTGCAGCACGTAT
CAAGCTCAAAGCTACTAGGATGTGTCCTCCACCCCCACGTCTCTTTTAGA
TGGGCGTGGAGTAGAAGTGGGCTCCGTCTGCAAACCGGGAGAAACGTATA
CACAAACTTGGCGGTTGGGCATTATTTTGGCCGGTCTGTTTTCAAGTGGC
AGACGAGACATAATTTCTCTCTACAATAGTCCGTTCTTCAATGTTCTTTG
TTCGTGAGAGGGGCCCACTGCAGCCCACGCCCATCCGGATGAGACAAGGG
GGTGGAGGCCACATCCTGACAATTTTGAGGTTGATACGTGCTCCAGCGGG
CGAGATATTTCTCATGTCGGCAGGTGTGAGTCAGCAAGCTGCATTTTGGC
TCGAAAAAGGATACGTGCCCCCTGTTCTGTTGAGCGGCTTCAACAAAACG
TTTTCATTCACCCGCGGCTGACGAGCGACGGCGCTGATCAGCCAGCAGAC
CGGCTGCACGTGATCGTACGATTCCCCGGAACCCTTGATGAGCACTCCTT
GTTCGGAATTCGTGTCGCATCCTTGATGGCATCACCCCATTCGATCTGCC
CCCCCAAGATCAAACTCGAAAATACAAAGCAACGCTTTTGACACCGGTTG
AATTAACTTCACAAGATCCCACTCGCCAGCCGCAATTTCTCGGAGTAAAT
GCCGAAAGTCATTTTTTCGGAGATTTGGACGCGCTATGAAGCCGAATTCT
GTTTCAATGTTGGATTTGTGAAGGAAGATGGGAAAACTACACCGCAAGCA
CCGGCCTGACAATTCGGAGGAAAAGTTACGCCCGATCCCTGGAACCACAG
CAAACCAGCCAATTTTTGTTCATCACGAGCTTTGCAGCCTTGGTGCACAC
TACAGTCTACACGAGCACCGTCTACGTACCCACATTGTCCGGATTGTTAC
TCAGAAGTCTGCAGGTTGTTTGTTTCCCGTCCACGACCGCTAACAAGTGC
GTTGTGTCCTCGGTAGTGCGCTTGCGCTTTCTTAACTTGGCGACACGACA
TTTCGAATGCGGCGACTTTCGCAGGGGGGTATAGATTCCTCGACAGAGCC
CATTCCTACCGCATTGCACCGATATCTAAATATGATGCGATGCATCGACG
GTTAGTAAACCCACCTCTGCGAGCGAGCTAAAAGACCCGAAACTGCAAAT
TAATGAATCCGATTTGTGGTTGGAAGCAATGTCTTTCCTAGCAAGACTCC
AGGCATACTTGGCTTGCACAAAACTAGAAAAAACTAGAAAAAAAATAGAA
AAAAAATAGAAAAAAAACTTATTGTTGAATCTAGGCAAAGCACAAAGACA
GCATAATTGCCAGAAGCAAAAAAGACATCGTTCAAGGCAGGATATGGCTT
TTTGTCGCGCAGCAAAAAAACATAAAACCGAAAGGCACACGTACCATACA
TCGAGGTATTGGTTCTCCGAGGTCTCACCTCCATTTTGTGAACCACTACG
GTCCACGGCCCGCTGTACTTTGCTACAAACTTCACGTGTCAACGAAGTGA
AGAATAACTCGCCACAGCAGAGTTTCTTGCCGAACAAAAGGTGTTTTAGC
GCAAGGTGTGGGCTTTGAAACGGGCGGAGAAGAAGCCGAAAGCTGCAGAA
AATTCAACAAACGACAGCGCAACGACCAACTCGCCTGCAGCCTCATGTGC
GCATTAGGATACGTCGTGTTGGTGCTCCTTTCTGGCTGGCCACACTGTGC
ACAATGCTGTCACCGACTTCGCTCTTGCACCTTCTGGTCCTGCAGTTTGC
CGCTCCCTTCGTCCCCACCACGTGCCCGTTTGCCGCCTTCGATGATGTCC
CGCGCGCCCCGATGCAGATCGAGGTTTCTGGTGCGGTAGTTCGCTCGACA
GAGTTTTGGGTCAGTAATCAAGCATACAGTCGTTTACATACTAAAGGTGC
CAGCGCAATCCCATTATTCACGCGAACATGTCTGTTGCCTGACATCGACC
CGGCTTGGAAAGTGCAAAAACCTCAACGATTATTTCCGCGTTATTCAAAA
CAAAAAGCCCTGCACCGCGTTGTTGTTTTTCAGCAGAACGATTGAGTTGT
ACGACCCAAATGGGAGGGCAGCTAATACCGCTGATGTTCTCGGCCGCAAA
AAGTTTCGCTTGCCCGGAGAAAGTGCACATCCCGCCTCGTAGCACTTTGT
CACCCCTCCAATCACTTTTCATAGCATTTTACCGGATAGTAGTTGTCACC
CCTCCAATTACTTTTCATAGCATTTTACCGGATGCATCAAAATATCCTGC
GAAACGCATTTCCCCACTTGAATTGTTGGAAGCCATGCACGGGCGACGAT
GTCGTTTTCATTCTCCTGCCCCTCGGGCCGCGAAACAACAGTTTATGCAT
ACCCTAACCCTAACACGAACTCTAATCCTGTCCCTACCCAAAAGTCGGAG
CAGTAGCCCCTCAACTTATCAAACCAATTGTGCGGAACAAATGGAAGATC
TCGCTCAACACAGTCAATGATGTCGCCACCACCCTGCTCCGAATCGTCCA
CTGCTCCGTTTCTTACCTCTTGGTCATGTCTGCATTCGATCAGCCGCGGC
GGATTCAAGAGCAACGGAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:199191..203060+

>mRNA_P-fluviatile_contig1.15.1 ID=mRNA_P-fluviatile_contig1.15.1|Name=mRNA_P-fluviatile_contig1.15.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=546bp|location=Sequence derived from alignment at P-fluviatile_contig1:199191..203060+ (Porterinema fluviatile SAG_2381)
TGTGTTTCCACCGAGGAACGGATAAGAAGAAAAGCAACCCCGCTTCCAGC
TGCCGGCGATTGCCACTCTTTTCTCTCGCGCGCTCGGACCTCTCACGTAT
CTGCACACGGTAGACGGCAAGTGTGTTTCCACCGAGGAACGGATAAGAAG
AAAAGCAACCCCGCTTCCAGCTGCCGGCGATTGCCACTCTTTTCTCTCGC
GCGCTCGGACCTCTCACGTATCTGCACACGGTAGACGGCAAGTAGCAAGC
CGCACCGATTCGAGCGCCGTCACCACCAGCATTGCCATCGCCAAAAGACA
ACCTACTCCCCTATCAGAGATCAACGAGCAGCGGCCTAGGGCTGGCAAGC
GGGATCGAGGCCGACTGAGTAGCAAGCCGCACCGATTCGAGCGCCGTCAC
CACCAGCATTGCCATCGCCAAAAGACAACCTACTCCCCTATCAGAGATCA
ACGAGCAGCGGCCTAGGGCTGGCAAGCGGGATCGAGGCCGACTGAGCCGC
GGCGGATTCAAGAGCAACGGACCGCGGCGGATTCAAGAGCAACGGA
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