mRNA_P-fluviatile_contig1.134.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.134.1
Unique NamemRNA_P-fluviatile_contig1.134.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1762679..1763583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size718
Cds size717
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815264.0822892-CDS-P-fluviatile_contig1:1762678..17630251622815264.0822892-CDS-P-fluviatile_contig1:1762678..1763025Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1762679..1763025 +
1693561261.5602238-CDS-P-fluviatile_contig1:1762678..17630251693561261.5602238-CDS-P-fluviatile_contig1:1762678..1763025Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1762679..1763025 +
1622815264.0947502-CDS-P-fluviatile_contig1:1763213..17635831622815264.0947502-CDS-P-fluviatile_contig1:1763213..1763583Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1763214..1763583 +
1693561261.8736835-CDS-P-fluviatile_contig1:1763213..17635831693561261.8736835-CDS-P-fluviatile_contig1:1763213..1763583Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1763214..1763583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.134.1prot_P-fluviatile_contig1.134.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1762679..1763583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.134.1

>prot_P-fluviatile_contig1.134.1 ID=prot_P-fluviatile_contig1.134.1|Name=mRNA_P-fluviatile_contig1.134.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=239bp
LGPPTPAGSTVDDLSTPWDDDEGGETIPAPHPRRLRSSSPAESAMYDAVT
DNEGDTSGPASKETSWVAARAAAAAAAGGSAASAVAAGTAAADGNGNEQA
EAEARLPVRGREGSSRSRDSPPSPAQRLDTYLLLDQTKSFESLPGIGGLR
RPEEATPQPAHMGGKAPNQENPRQGVKFGSLDDILASKARPSTEVGEKTG
VASAGAETPAPSHPLGKDHNAGGFSTGGGPAAAQHQVGG
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mRNA from alignment at P-fluviatile_contig1:1762679..1763583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.134.1 ID=mRNA_P-fluviatile_contig1.134.1|Name=mRNA_P-fluviatile_contig1.134.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=905bp|location=Sequence derived from alignment at P-fluviatile_contig1:1762679..1763583+ (Porterinema fluviatile SAG_2381)
CTTGGACCACCGACTCCGGCCGGGTCAACTGTGGATGACTTGTCCACTCC
GTGGGACGATGACGAGGGTGGTGAAACCATACCAGCCCCTCACCCCCGGA
GGCTTAGGTCATCTTCCCCCGCGGAGTCGGCTATGTATGACGCTGTTACC
GACAACGAAGGTGATACGAGCGGGCCAGCCTCGAAGGAAACGTCGTGGGT
AGCGGCAAGGGCAGCGGCAGCAGCGGCAGCGGGAGGGTCAGCGGCGTCCG
CAGTAGCAGCCGGAACAGCAGCAGCAGACGGGAACGGGAACGAGCAGGCG
GAGGCGGAAGCCCGTTTGCCAGTGCGCGGGAGGGAAGGAAGTTCGAGGTG
TGAAGCGAGAGATAAGAAACCGTGTGCAGAGGTCAACTACAGGCGTTCTC
TTCGTCCTACTATGTGTCACTTCAGGCTTGATGCTGTTGTTCGGATTGTG
TTTGAGTCATTGTTCCAGAGAGAATAAGCATGTTCTCTCGGCGCACTTCA
CTGTGTTCAATCATGTGCTAAAATGTTTTTGCCAGGAGCAGAGACAGCCC
ACCCTCTCCGGCGCAGCGTTTGGACACCTACCTGCTCCTGGACCAGACCA
AGTCGTTCGAGTCCCTCCCGGGCATAGGTGGATTGAGGAGACCGGAAGAG
GCGACGCCTCAGCCCGCACACATGGGCGGTAAAGCTCCCAACCAAGAAAA
CCCCCGACAAGGCGTGAAGTTTGGCAGCCTGGACGACATTCTGGCAAGCA
AGGCTCGACCCTCGACTGAGGTAGGAGAGAAAACGGGCGTCGCGTCGGCG
GGAGCAGAAACGCCGGCGCCGAGTCACCCACTAGGCAAGGACCACAATGC
AGGTGGCTTCTCGACCGGCGGCGGCCCAGCAGCAGCTCAGCATCAGGTAG
GAGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:1762679..1763583+

>mRNA_P-fluviatile_contig1.134.1 ID=mRNA_P-fluviatile_contig1.134.1|Name=mRNA_P-fluviatile_contig1.134.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1434bp|location=Sequence derived from alignment at P-fluviatile_contig1:1762679..1763583+ (Porterinema fluviatile SAG_2381)
CTTGGACCACCGACTCCGGCCGGGTCAACTGTGGATGACTTGTCCACTCC
GTGGGACGATGACGAGGGTGGTGAAACCATACCAGCCCCTCACCCCCGGA
GGCTTAGGTCATCTTCCCCCGCGGAGTCGGCTATGTATGACGCTGTTACC
GACAACGAAGGTGATACGAGCGGGCCAGCCTCGAAGGAAACGTCGTGGGT
AGCGGCAAGGGCAGCGGCAGCAGCGGCAGCGGGAGGGTCAGCGGCGTCCG
CAGTAGCAGCCGGAACAGCAGCAGCAGACGGGAACGGGAACGAGCAGGCG
GAGGCGGAAGCCCGTTTGCCAGTGCGCGGGAGGGAAGGAAGTTCGAGCTT
GGACCACCGACTCCGGCCGGGTCAACTGTGGATGACTTGTCCACTCCGTG
GGACGATGACGAGGGTGGTGAAACCATACCAGCCCCTCACCCCCGGAGGC
TTAGGTCATCTTCCCCCGCGGAGTCGGCTATGTATGACGCTGTTACCGAC
AACGAAGGTGATACGAGCGGGCCAGCCTCGAAGGAAACGTCGTGGGTAGC
GGCAAGGGCAGCGGCAGCAGCGGCAGCGGGAGGGTCAGCGGCGTCCGCAG
TAGCAGCCGGAACAGCAGCAGCAGACGGGAACGGGAACGAGCAGGCGGAG
GCGGAAGCCCGTTTGCCAGTGCGCGGGAGGGAAGGAAGTTCGAGGAGCAG
AGACAGCCCACCCTCTCCGGCGCAGCGTTTGGACACCTACCTGCTCCTGG
ACCAGACCAAGTCGTTCGAGTCCCTCCCGGGCATAGGTGGATTGAGGAGA
CCGGAAGAGGCGACGCCTCAGCCCGCACACATGGGCGGTAAAGCTCCCAA
CCAAGAAAACCCCCGACAAGGCGTGAAGTTTGGCAGCCTGGACGACATTC
TGGCAAGCAAGGCTCGACCCTCGACTGAGGTAGGAGAGAAAACGGGCGTC
GCGTCGGCGGGAGCAGAAACGCCGGCGCCGAGTCACCCACTAGGCAAGGA
CCACAATGCAGGTGGCTTCTCGACCGGCGGCGGCCCAGCAGCAGCTCAGC
ATCAGGTAGGAGGGGAGCAGAGACAGCCCACCCTCTCCGGCGCAGCGTTT
GGACACCTACCTGCTCCTGGACCAGACCAAGTCGTTCGAGTCCCTCCCGG
GCATAGGTGGATTGAGGAGACCGGAAGAGGCGACGCCTCAGCCCGCACAC
ATGGGCGGTAAAGCTCCCAACCAAGAAAACCCCCGACAAGGCGTGAAGTT
TGGCAGCCTGGACGACATTCTGGCAAGCAAGGCTCGACCCTCGACTGAGG
TAGGAGAGAAAACGGGCGTCGCGTCGGCGGGAGCAGAAACGCCGGCGCCG
AGTCACCCACTAGGCAAGGACCACAATGCAGGTGGCTTCTCGACCGGCGG
CGGCCCAGCAGCAGCTCAGCATCAGGTAGGAGGG
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