mRNA_P-fluviatile_contig1.129.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.129.1
Unique NamemRNA_P-fluviatile_contig1.129.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1684965..1685443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size468
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.129.1prot_P-fluviatile_contig1.129.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1684976..1685397 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815264.0184445-UTR-P-fluviatile_contig1:1684964..16849751622815264.0184445-UTR-P-fluviatile_contig1:1684964..1684975Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1684965..1684975 +
1693561261.3424048-UTR-P-fluviatile_contig1:1684964..16849751693561261.3424048-UTR-P-fluviatile_contig1:1684964..1684975Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1684965..1684975 +
1622815264.0480237-UTR-P-fluviatile_contig1:1685397..16854431622815264.0480237-UTR-P-fluviatile_contig1:1685397..1685443Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1685398..1685443 +
1693561261.5498133-UTR-P-fluviatile_contig1:1685397..16854431693561261.5498133-UTR-P-fluviatile_contig1:1685397..1685443Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1685398..1685443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815264.0293102-CDS-P-fluviatile_contig1:1684975..16852431622815264.0293102-CDS-P-fluviatile_contig1:1684975..1685243Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1684976..1685243 +
1693561261.522019-CDS-P-fluviatile_contig1:1684975..16852431693561261.522019-CDS-P-fluviatile_contig1:1684975..1685243Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1684976..1685243 +
1622815264.0388894-CDS-P-fluviatile_contig1:1685254..16853971622815264.0388894-CDS-P-fluviatile_contig1:1685254..1685397Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1685255..1685397 +
1693561261.5391092-CDS-P-fluviatile_contig1:1685254..16853971693561261.5391092-CDS-P-fluviatile_contig1:1685254..1685397Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1685255..1685397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.129.1

>prot_P-fluviatile_contig1.129.1 ID=prot_P-fluviatile_contig1.129.1|Name=mRNA_P-fluviatile_contig1.129.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=137bp
MRAGRLPAVRCDQSHERPGQVVNHPVIRLEFEATERCARPPVTAPTRARG
ASGGANGHQRQTSCRTLNDIISGHWKRNFKAVSLRKDKATQLAAFASDER
RIESHTPTSFELHLNLREVPVISHRHPVNHTLPPSS*
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mRNA from alignment at P-fluviatile_contig1:1684965..1685443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.129.1 ID=mRNA_P-fluviatile_contig1.129.1|Name=mRNA_P-fluviatile_contig1.129.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=479bp|location=Sequence derived from alignment at P-fluviatile_contig1:1684965..1685443+ (Porterinema fluviatile SAG_2381)
CGGGGGGTTGCATGAGAGCAGGGCGACTGCCAGCTGTCCGTTGCGATCAA
TCCCACGAACGTCCAGGCCAGGTAGTCAATCATCCTGTTATTCGCCTTGA
ATTTGAAGCGACTGAGCGGTGCGCGAGGCCGCCAGTTACTGCTCCAACGA
GGGCAAGGGGAGCTAGCGGCGGGGCTAATGGACACCAAAGACAGACGTCC
TGCCGAACTCTCAACGATATCATCTCGGGGCATTGGAAGCGAAATTTTAA
GGCCGTTTCTTTGCGCAAAGACAAAGCTAGTTCTGCACAGCCCAACTAGC
CGCTTTTGCTTCAGATGAAAGAAGAATCGAGTCACACACGCCCACGTCTT
TTGAATTGCACCTGAACCTCCGCGAAGTGCCTGTAATTAGCCATCGACAC
CCAGTCAATCATACCTTGCCACCGTCTTCTTAGCCTTGACGGCCTCGTGT
ACTTGGAGCCCCGCCGGCGCTACTTCCAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:1684965..1685443+

>mRNA_P-fluviatile_contig1.129.1 ID=mRNA_P-fluviatile_contig1.129.1|Name=mRNA_P-fluviatile_contig1.129.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=822bp|location=Sequence derived from alignment at P-fluviatile_contig1:1684965..1685443+ (Porterinema fluviatile SAG_2381)
ATGAGAGCAGGGCGACTGCCAGCTGTCCGTTGCGATCAATCCCACGAACG
TCCAGGCCAGGTAGTCAATCATCCTGTTATTCGCCTTGAATTTGAAGCGA
CTGAGCGGTGCGCGAGGCCGCCAGTTACTGCTCCAACGAGGGCAAGGGGA
GCTAGCGGCGGGGCTAATGGACACCAAAGACAGACGTCCTGCCGAACTCT
CAACGATATCATCTCGGGGCATTGGAAGCGAAATTTTAAGGCCGTTTCTT
TGCGCAAAGACAAAGCTAATGAGAGCAGGGCGACTGCCAGCTGTCCGTTG
CGATCAATCCCACGAACGTCCAGGCCAGGTAGTCAATCATCCTGTTATTC
GCCTTGAATTTGAAGCGACTGAGCGGTGCGCGAGGCCGCCAGTTACTGCT
CCAACGAGGGCAAGGGGAGCTAGCGGCGGGGCTAATGGACACCAAAGACA
GACGTCCTGCCGAACTCTCAACGATATCATCTCGGGGCATTGGAAGCGAA
ATTTTAAGGCCGTTTCTTTGCGCAAAGACAAAGCTACCCAACTAGCCGCT
TTTGCTTCAGATGAAAGAAGAATCGAGTCACACACGCCCACGTCTTTTGA
ATTGCACCTGAACCTCCGCGAAGTGCCTGTAATTAGCCATCGACACCCAG
TCAATCATACCTTGCCACCGTCTTCTTAGCCCAACTAGCCGCTTTTGCTT
CAGATGAAAGAAGAATCGAGTCACACACGCCCACGTCTTTTGAATTGCAC
CTGAACCTCCGCGAAGTGCCTGTAATTAGCCATCGACACCCAGTCAATCA
TACCTTGCCACCGTCTTCTTAG
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