mRNA_P-fluviatile_contig1.121.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.121.1
Unique NamemRNA_P-fluviatile_contig1.121.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig1.121.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 4.620e-72
Identity = 115/175 (65.71%), Postives = 132/175 (75.43%), Query Frame = 2
Query:  221 CTSDAAVEVLLHAVDISGRVLDMCGGPGDAVARLLGATCELVTNDVSGR------KAPDSHLDASATTFCADSLEDGTQQRPDWVVTSPPYKGALKFVKAALSVAKKGLALKLPLSFLEPCADRGAWLSANPPALCVF*RRAKYTPAQVIVGEFWGVWHNPRVDATTAGGSKLLF 727
            CTS  AVE LL AV++SGRVLDMCGGP DAVAR L  TCE+VTNDVS R      +APD+ LDAS +TF A+ L DG QQ+P+ VV SPPYKGA+KFVKAAL VAK G+ALK  LSFLEPC DR  WL ANPP +CVF RRA YTP  V++GEFWGVW+    D T  GG+KL+F
Sbjct:  120 CTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRASYTPEHVMMGEFWGVWYCTGGDRTAVGGTKLVF 294          
BLAST of mRNA_P-fluviatile_contig1.121.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 2.300e-64
Identity = 102/155 (65.81%), Postives = 118/155 (76.13%), Query Frame = 2
Query:  221 CTSDAAVEVLLHAVDISGRVLDMCGGPGDAVARLLGATCELVTNDVSGRKAPDSHLDASATTFCADSLEDGTQQRPDWVVTSPPYKGALKFVKAALSVAKKGLALKLPLSFLEPCADRGAWLSANPPALCVF*RRAKYTPAQVIVGEFWGVWHNP 685
            CTS A +E LL  V ISG VLDMCGG  DAVA  L  TC+++TNDV  R +P ++LDAS+ +F  D L     Q+PDW+VTSPPYKGAL FVKAAL+VAKKG+ALKLPLSFLEPCADR  WL ANPPALC+   RA+Y PA V VGEFWGVW+ P
Sbjct:   72 CTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPP 226          
BLAST of mRNA_P-fluviatile_contig1.121.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 3.890e-64
Identity = 106/171 (61.99%), Postives = 129/171 (75.44%), Query Frame = 2
Query:  221 CTSDAAVEVLLHAVDISGRVLDMCGGPGDAVARLLGATCELVTNDVSGRKAPDSHLDASATTFCADSLEDGTQQRPDWVVTSPPYKGALKFVKAALSVAKKGLALKLPLSFLEPCADRGAWLSANPPALCVF*RRAKYTPAQ-VIVGEFWGVWHNPRVDATTAGGSKLLFC 730
            CT   AVEVL +AV I+G VLDMCGGP DAVA+   +TCE++TNDVS R +  ++LDAS  +F  +  +    ++PDWVVTSPPYKGA+ FVKAAL+VA KG+ALKLPLSFLEPCADRG WL  NPPA+C+F RRAKYT A  V VGEFWGVW+        +GGS+L+FC
Sbjct:  130 CTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAHHVKVGEFWGVWYTDGGCCGKSGGSRLVFC 300          
BLAST of mRNA_P-fluviatile_contig1.121.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.020e-56
Identity = 94/176 (53.41%), Postives = 118/176 (67.05%), Query Frame = 2
Query:  206 WTATTCTSDAAVEVLLHAVDISGRVLDMCGGPGDAVARLLGATCELVTNDVSGRKAPDSHLDASATTFCADSLEDGTQQRPDWVVTSPPYKGALKFVKAALSVAKKGLALKLPLSFLEPCADRGAWLSANPPALCVF*RRAKYTPAQ-VIVGEFWGVWHNPRVDATTAGGSKLLFC 730
            W    CTS  A++  L AVDI+G VLDMCGGP DAVA  L +TCE++TNDVS  +  D++LDAS  +F  D L   + +RP+WV TSPPY  AL FVKAA+S+A KG+  K+ + FLEPCAD G WL  NPP+LCVF RRAKYT A      EFWGVW+   +       ++L+FC
Sbjct:   26 WLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLRRAKYTRANNAKTSEFWGVWYTQEMSCRNR--TRLVFC 199          
BLAST of mRNA_P-fluviatile_contig1.121.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.890e-56
Identity = 92/137 (67.15%), Postives = 109/137 (79.56%), Query Frame = 2
Query:  221 CTSDAAVEVLLHAVDISGRVLDMCGGPGDAVARLLGATCELVTNDVSGRKAP-----DSHLDASATTFCADSLEDGTQQRPDWVVTSPPYKGALKFVKAALSVAKKGLALKLPLSFLEPCADRGAWLSANPPALCVF 616
            CTS  AVE LL AV++ G VLDMCGGPGDA+A  LGATC++VTND+S R +P     D++LDAS  +F  D L     QRPDWV+TSPPYKGAL++VK+ALS+A KG+ALKLPLSFLEPCADRG WL ANPPA+CVF
Sbjct:   84 CTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVF 220          
BLAST of mRNA_P-fluviatile_contig1.121.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.250e-50
Identity = 83/149 (55.70%), Postives = 105/149 (70.47%), Query Frame = 2
Query:  287 MCGGPGDAVARLLGATCELVTNDVSGRKAPDSHLDASATTFCADSLEDGTQQRPDWVVTSPPYKGALKFVKAALSVAKKGLALKLPLSFLEPCADRGAWLSANPPALCVF*RRAKYTPAQ-VIVGEFWGVWHNPRVDATTAGGSKLLFC 730
            MCGGP DAVA  L +TCE++TNDVS  +  D++L+AS   F  D L   + +RP+WVVTSPPY  AL FVKAA+S+A KG+A K+P+ FLEPCADRG WL  NPP++CVF RRAKYT A     GEFWGVW+   +       ++L+FC
Sbjct:    1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWYPQEMSCRNR--TRLVFC 147          
BLAST of mRNA_P-fluviatile_contig1.121.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 7.950e-48
Identity = 86/149 (57.72%), Postives = 100/149 (67.11%), Query Frame = 2
Query:  287 MCGGPGDAVARLLGATCELVTNDVSGRKAPDSHLDASATTFCADSLEDGTQQRPDWVVTSPPYKGALKFVKAALSVAKKGLALKLPLSFLEPCADRGAWLSANPPALCVF*RRAKYTPAQ-VIVGEFWGVWHNPRVDATTAGGSKLLFC 730
            MCGGP DAVA   G TCE++TNDVS R +P                  G Q  PDWVVTSPPYKGA+ FVKA L+VA KG+AL+LPLSF +PCADRG+WL  NPP +C F RRAKYT A  V VGEFWGVW+        +GGS+L+FC
Sbjct:    1 MCGGPEDAVALGFGGTCEVLTNDVSSRLSP---------------AHPGKQ--PDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRAKYTHAHHVKVGEFWGVWYTDG-GCGKSGGSRLVFC 131          
BLAST of mRNA_P-fluviatile_contig1.121.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 7.870e-47
Identity = 76/119 (63.87%), Postives = 91/119 (76.47%), Query Frame = 2
Query:  371 APDSHLDASATTFCADSLEDGTQQRPDWVVTSPPYKGALKFVKAALSVAKKGLALKLPLSFLEPCADRGAWLSANPPALCVF*RRAKYTPAQVIVGEFWGVWHNPRVDATTAGGSKLLF 727
            +PD++LDAS+ +F  D L    +Q+PDWVVT PPY GAL FVKAAL VAKKG+ALKLPLSFLEPCADR  WL ANPPALC+   RA+Y PA V VGEFWGVW+ P    +++  +KLLF
Sbjct:   52 SPDTNLDASSASFTDDFLAAHHEQQPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPPGSGYSSSDSTKLLF 170          
BLAST of mRNA_P-fluviatile_contig1.121.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 7.100e-46
Identity = 73/119 (61.34%), Postives = 90/119 (75.63%), Query Frame = 2
Query:  371 APDSHLDASATTFCADSLEDGTQQRPDWVVTSPPYKGALKFVKAALSVAKKGLALKLPLSFLEPCADRGAWLSANPPALCVF*RRAKYTPAQVIVGEFWGVWHNPRVDATTAGGSKLLF 727
            +PD++LDAS+T++  D L     Q+PDWVV SPPYKGAL FVKAAL+VAK+G+ALKLPLSFLEPCADR  WL  NPP+LC+   RA+Y PA V VGEFWGVW+ P   ++    +KL F
Sbjct:   11 SPDTNLDASSTSYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRARYQPAHVRVGEFWGVWYPPGGGSSIGDSTKLSF 129          
BLAST of mRNA_P-fluviatile_contig1.121.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.040e-45
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 2
Query:  365 RKAPDSHLDASATTFCADSLEDGTQQRPDWVVTSPPYKGALKFVKAALSVAKKGLALKLPLSFLEPCADRGAWLSANPPALCVF*RRAKYTPAQVIVGEFWGVWHNPRVDATTAGGSKLLF 727
            R +PD++LDAS+ +F  D L     Q+PDWVV+SPPY+GAL FVKAAL+VAK+G+ALKLPLSFLEPCADR  WL ANPPALC+   RA+Y PA V VGEF GVW+ P   ++++  +KLLF
Sbjct:   10 RLSPDTNLDASSASFADDYLAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANPPALCMMMSRARYQPALVRVGEFRGVWYPPGSGSSSSDSTKLLF 130          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHQ4_9PHAE4.620e-7265.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K049_9PHAE2.300e-6465.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK3_9PHAE3.890e-6461.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0Y0_ECTSI1.020e-5653.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJU4_ECTSI1.890e-5667.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSI1_ECTSI1.250e-5055.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K929_9PHAE7.950e-4857.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSV3_9PHAE7.870e-4763.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAM1_9PHAE7.100e-4661.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT40_9PHAE1.040e-4561.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1603176..1606071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue5e-07
Seed eggNOG ortholog102129.Lepto7375DRAFT_1733
EggNOG free text desc.Specifically methylates the guanine in position
EggNOG OGs1GAGN@1117,1HHWT@1150,COG2813@1,COG2813@2
COG Functional cat.J
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size730
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.121.1prot_P-fluviatile_contig1.121.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1603287..1605935 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815289.3084037-UTR-P-fluviatile_contig1:1603175..16032861622815289.3084037-UTR-P-fluviatile_contig1:1603175..1603286Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1603176..1603286 -
1693561403.7345712-UTR-P-fluviatile_contig1:1603175..16032861693561403.7345712-UTR-P-fluviatile_contig1:1603175..1603286Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1603176..1603286 -
1622815289.3490357-UTR-P-fluviatile_contig1:1605935..16060711622815289.3490357-UTR-P-fluviatile_contig1:1605935..1606071Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1605936..1606071 -
1693561403.9578578-UTR-P-fluviatile_contig1:1605935..16060711693561403.9578578-UTR-P-fluviatile_contig1:1605935..1606071Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1605936..1606071 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815289.3240352-CDS-P-fluviatile_contig1:1603286..16035391622815289.3240352-CDS-P-fluviatile_contig1:1603286..1603539Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1603287..1603539 -
1693561403.935162-CDS-P-fluviatile_contig1:1603286..16035391693561403.935162-CDS-P-fluviatile_contig1:1603286..1603539Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1603287..1603539 -
1622815289.3371897-CDS-P-fluviatile_contig1:1605705..16059351622815289.3371897-CDS-P-fluviatile_contig1:1605705..1605935Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1605706..1605935 -
1693561403.9481668-CDS-P-fluviatile_contig1:1605705..16059351693561403.9481668-CDS-P-fluviatile_contig1:1605705..1605935Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1605706..1605935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.121.1

>prot_P-fluviatile_contig1.121.1 ID=prot_P-fluviatile_contig1.121.1|Name=mRNA_P-fluviatile_contig1.121.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=161bp
MFPRPEQGGPVLPSLSCGSNGTLWTATTCTSDAAVEVLLHAVDISGRVLD
MCGGPGDAVARLLGATCELVTNDVSGRKAPDSHLDASATTFCADSLEDGT
QQRPDWVVTSPPYKGALKFVKAALSVAKKGLALKLPLSFLEPCADRGAWL
SANPPALCVF*
back to top

mRNA from alignment at P-fluviatile_contig1:1603176..1606071-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.121.1 ID=mRNA_P-fluviatile_contig1.121.1|Name=mRNA_P-fluviatile_contig1.121.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2896bp|location=Sequence derived from alignment at P-fluviatile_contig1:1603176..1606071- (Porterinema fluviatile SAG_2381)
AAAAAATTCCCTGGCCCAGCAGTGTTCTCGAACACTGTCCCCTTGGTACT GTGTAAACGTGCTGGTTGCCTGTTGAACCTGTACGACAAGCGCATGAGAG TACTTAGCAAAGAGCGCATTGCGCGCCGACTGAAGCATGTTCCCGCGGCC GGAACAAGGTGGACCGGTACTCCCTAGCCTGTCCTGCGGCTCCAACGGCA CCCTCTGGACCGCTACTACTTGTACCTCCGATGCGGCGGTCGAGGTGCTG CTTCATGCTGTGGACATTAGCGGCAGAGTATTGGACATGTGTGGGGGACC CGGTGATGCGGTGGCACGGCTACTTGGAGCCACGTGTGAGCTCGTCACGA ACGACGTCAGCGGCAGGTGATTTTTTTTTTTGTAGTTGGCAATTGGGGTA AACGAGCAGTGGCTTGTGGTACAGTTGCGGCCCGCACTTAAGAACCGCTT ATTTCGCGTTACCTTCAAGGCTTCTTGGCTGCCGCAACCCGAGCACCTGT TCTTATTGGCCATGTTCTTATTTCGACCAGGCAACCCCTGGCCAAAAACG GGGGTTCTTGTTCGTATTTCAACATCGAGTCCTCCCAGTATGTATATGAT AAGTTCTTTGGTGGATCTCAACACTCCGGAGGAGCCAACACGAGAACCTT TCAAGAGGCAACTGTGCAAACATGCTCATGCCATGGAACAACTCTCAACC TTCTTGGTCGACACGGGTTACGCTGGCGCGTAATGTCCGTCCTACTCTAC TAACGCCCACCGTGTTAGCAGCTCCGACTCCAGCCACCTGCTCTGCTGTG GTCCTTTCAAGCAAAACCCAAGAGCCTACCCCCGCATCCGGATCTGCGCT GTACTTGGCTAGTGGCAGCTTCATGCTGCGCCTACTCTGGTCTAGCTCCA GCTGCACGCGGTAGTCGTACAGGTGGCGGGTGCGCAGCTGAGATTGCCGA GTGATCAACGCCCCAAACCACCCCGTGCCCAGTCTAATGAGCACCCCACG TTGCAAAAGCGAACTGTCAAGAGTAGCGGGTTTGGATTGTTGAATGCGGA AGCCGTCCGGATCTCCATTCCGCATATCTCATCATCCGGGTCGTCCGCAT CCATGGTCGTCGTCGTCGAGATGGGACTCTGCGAAGGTGGGCACCGTGAA ACACGCCAAGTACGGGTCACCGGATGACATTATCCAACCATCCATTTGGT CGTAGACATGGATGCGAAACGAGCACGACAACAGCAACTTACTCAACCAA ACCAACAACGTCATCGAAATCGTCACCAGCAAAACCAGAAATTGAAATTG GATTGGATGTACTGGAAACGCAACTTACCGTCGTCGGCTTCGTCGCTTGA GTCGCAGTCGTCCAGGTCCTCCCTGCTGTTGTCACCATTGCGCCCACCCC CCACAATCGTCTCCCGCCAGAGCCCTCCTCCCCATCCCCAGGCCCATTGC TGCGAGTCTCTGAAGCTCCTTCCGTCCTCGCTGGAGTCTTCACCGTCCGC GAAGGTGTACGGCTTTTCCAAACCCTCCAACGTGATTTTCTCATCGCCAG AGCCATACACCGTCACCGCCATCCCACACTTTTTGAAAGACGAAATCGGT ATTCCTGGCGGCTGTTGAGGAGTTGCGTGGCTTCTCCCATCCATTGAGTC ATCAACACACGTCGGTCCGAAGCTGTCAGCGACTTGCTTTCCCACCACTC GAGGTGGTCCGACTGCTCGAGCCACATGTCCAACCGCCTCCCAATGTCCA CCTTGAGAAACCGTCCGGCTCCTGCATCCACTGGCTGCACCTCGTCCGTG CATTCCGCGGGACCACACGAAGCGAGAGTGTTGCACTCCTTCGCAAGGTA CTCCTTGAACGCATCCGTCGTCTGCGCGTGCTAAGTTGTCCATGATGAGG ATGGATCTCGCCTTGGGGAGCTCACCCAGCCCTCGCATAAGGCTTTTGCG GTAGGACCTCTTTGCCCACTCCATGCAGAAGTTTTGGTCCGCCCACGCGT TTTCCTGGAAAAACACGTCCACGTCCTTGTGGTACGCGGCCTTCTCCACA GCTGAGATCCGCTTCCCATTGCCTCGGACAATCACCGCAATTCGGAAAAC CTGACCCCATCACGACCCCCTCTCAAGTTCTTACCTTCCAGCCACACCAT GTTATGGACCTTGTTCTTTACGTGAGCTGGACTTTCTCATCTCTTGTGCG GGTTCTTGTTCTGATCGGCACCTCCCAACTGAGCACCTGTTCCTATGGCC ATGTTCTAACGTATTTATTTTTTTGAGCCTGAAGATCTTAACTACCAGGT TCTTAAGTGCGGGCAACTGTAGCGTCTGGAGAAACAGCGTGGAGGTTATA ATGTTTCTGTTCCCCGTAGGTTGTATTGAGCATTGATGTCGTCGGGCCCC TCCTCCCTCCTCCCGCCCCTCCCAACTTTGTTCTGCCCAGTTGGTAACAA TTGCAGCGCGTGCGTTTCCATACCTTTCCCCCCCCACTTGCACCTCTTTC CTCCTATTTTCAGGTTGTCCCCCGGATCGAAGAAAGGCGCCGGACTCTCA CCTAGATGCAAGCGCGACGACATTTTGTGCCGACTCCCTTGAGGATGGCA CTCAACAGCGGCCTGACTGGGTCGTGACGAGCCCCCCCTACAAGGGAGCT CTCAAGTTTGTCAAGGCGGCGCTGTCGGTAGCAAAGAAAGGCTTGGCGCT AAAGCTGCCCTTGTCTTTTCTTGAACCTTGCGCAGACAGAGGAGCGTGGC TTTCGGCGAATCCTCCGGCTCTTTGTGTGTTTTGAAGGAGGGCCAAATAC ACGCCCGCCCAAGTCATCGTTGGTGAATTTTGGGGGGTCTGGCACAACCC TCGCGTTGACGCGACGACCGCTGGTGGCTCAAAACTTTTGTTTTGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:1603176..1606071-

>mRNA_P-fluviatile_contig1.121.1 ID=mRNA_P-fluviatile_contig1.121.1|Name=mRNA_P-fluviatile_contig1.121.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=966bp|location=Sequence derived from alignment at P-fluviatile_contig1:1603176..1606071- (Porterinema fluviatile SAG_2381)
ATGTTCCCGCGGCCGGAACAAGGTGGACCGGTACTCCCTAGCCTGTCCTG
CGGCTCCAACGGCACCCTCTGGACCGCTACTACTTGTACCTCCGATGCGG
CGGTCGAGGTGCTGCTTCATGCTGTGGACATTAGCGGCAGAGTATTGGAC
ATGTGTGGGGGACCCGGTGATGCGGTGGCACGGCTACTTGGAGCCACGTG
TGAGCTCGTCACGAACGACGTCAGCGGCAGATGTTCCCGCGGCCGGAACA
AGGTGGACCGGTACTCCCTAGCCTGTCCTGCGGCTCCAACGGCACCCTCT
GGACCGCTACTACTTGTACCTCCGATGCGGCGGTCGAGGTGCTGCTTCAT
GCTGTGGACATTAGCGGCAGAGTATTGGACATGTGTGGGGGACCCGGTGA
TGCGGTGGCACGGCTACTTGGAGCCACGTGTGAGCTCGTCACGAACGACG
TCAGCGGCAGAAAGGCGCCGGACTCTCACCTAGATGCAAGCGCGACGACA
TTTTGTGCCGACTCCCTTGAGGATGGCACTCAACAGCGGCCTGACTGGGT
CGTGACGAGCCCCCCCTACAAGGGAGCTCTCAAGTTTGTCAAGGCGGCGC
TGTCGGTAGCAAAGAAAGGCTTGGCGCTAAAGCTGCCCTTGTCTTTTCTT
GAACCTTGCGCAGACAGAGGAGCGTGGCTTTCGGCGAATCCTCCGGCTCT
TTGTGTGTTTTGAAAAGGCGCCGGACTCTCACCTAGATGCAAGCGCGACG
ACATTTTGTGCCGACTCCCTTGAGGATGGCACTCAACAGCGGCCTGACTG
GGTCGTGACGAGCCCCCCCTACAAGGGAGCTCTCAAGTTTGTCAAGGCGG
CGCTGTCGGTAGCAAAGAAAGGCTTGGCGCTAAAGCTGCCCTTGTCTTTT
CTTGAACCTTGCGCAGACAGAGGAGCGTGGCTTTCGGCGAATCCTCCGGC
TCTTTGTGTGTTTTGA
back to top