mRNA_P-fluviatile_contig1.120.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.120.1
Unique NamemRNA_P-fluviatile_contig1.120.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1585439..1586489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size163
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815263.4859004-CDS-P-fluviatile_contig1:1585439..15855191622815263.4859004-CDS-P-fluviatile_contig1:1585439..1585519Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1585440..1585519 -
1693561249.7463117-CDS-P-fluviatile_contig1:1585439..15855191693561249.7463117-CDS-P-fluviatile_contig1:1585439..1585519Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1585440..1585519 -
1622815263.4987178-CDS-P-fluviatile_contig1:1586407..15864891622815263.4987178-CDS-P-fluviatile_contig1:1586407..1586489Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1586408..1586489 -
1693561249.817562-CDS-P-fluviatile_contig1:1586407..15864891693561249.817562-CDS-P-fluviatile_contig1:1586407..1586489Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1586408..1586489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.120.1prot_P-fluviatile_contig1.120.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1585440..1586489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.120.1

>prot_P-fluviatile_contig1.120.1 ID=prot_P-fluviatile_contig1.120.1|Name=mRNA_P-fluviatile_contig1.120.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=54bp
EKSSTVSPATRVESTGKKNEPQGTRVAGELQAVHHVAFMSREAGAKERGE
EVVV
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mRNA from alignment at P-fluviatile_contig1:1585439..1586489-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.120.1 ID=mRNA_P-fluviatile_contig1.120.1|Name=mRNA_P-fluviatile_contig1.120.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1051bp|location=Sequence derived from alignment at P-fluviatile_contig1:1585439..1586489- (Porterinema fluviatile SAG_2381)
GAAAAGAGCAGCACGGTGTCCCCTGCAACGCGTGTGGAATCAACGGGGAA
AAAAAACGAACCACAGGGCACACGCGTTGCAGGTCAGACCACAGTTTGGA
GCGCGCTCCATGCTCACCTCGCTTTCTCTCCCTCGCTGGCTTAGCCTGGG
CCATCTCGACACCGCTCACTGCTACACTATACACTTATATTCCAGTGTAA
GCTGGGATATCCGAGTTGGGTCAGATTCTTGAGTGAAATCCGGGGTGCAA
CACACCCAACAGGTGCTGTCGCATGATGCTGGTTAGTGTACCACGCAGCA
GCAGCAGCTGTGTAGGGCTTTGCGCGGGTTGCCGCACCAGTCTTTGTTTA
TACTGCAATGTTAGCTCTTTGCCGAGCCTTGCTATGTTGTTGGCTGGAGT
AGTGTTGCAGCGCGAAGTAATGCACAGCTCAAGCCGAACGAGCAAGAGGT
GTGGTCGCCACTATTTTGAATTTTTGATTTTTTCATCATGGACCAAGCAT
GAACCAGGATTCTCCCTCACAGCTCACATCCAAGCCTGACCAGCGCCAAA
CGGTGCGCTACAGCTCGTGGGAGACCTTGACCTCTGTCGACGGTGTAAAC
ACTGGTGCGGTTGTGGGGCTTGAGGAAAACGGCATCGGAGAAGGTGTGTT
TTGCTGCTTTACAAGGCTTGATCCCTGATGAGACCCGTATCTCACCTCGT
AGCTTTGACTTCTGTTGCTTGCGGCAAAGTTCGCTGGATGGAGGATGAAC
TGAGTTGTGGGTGCAAGGCGCTGTAAGGATTTGGTATCTTCCAGGTAGAT
TGCTGACCATCCAAGCGGGGATTTCTGGATCTGTATTCCTGTATTTCATG
CAGTTTTACTTGCTTTAAACACGTACGCACCCGGTCTACCTCCACACCAC
ACGATCCGGTCGTCTAAACAAATGCCTACTAGATTCTTGTCACTGTTGTC
ACGTCCCGCCGCCGTAACAGGTGAACTGCAGGCGGTGCATCACGTCGCCT
TTATGTCTCGAGAGGCTGGTGCGAAGGAGAGGGGGGAAGAGGTGGTGGTG
G
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:1585439..1586489-

>mRNA_P-fluviatile_contig1.120.1 ID=mRNA_P-fluviatile_contig1.120.1|Name=mRNA_P-fluviatile_contig1.120.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig1:1585439..1586489- (Porterinema fluviatile SAG_2381)
GAAAAGAGCAGCACGGTGTCCCCTGCAACGCGTGTGGAATCAACGGGGAA
AAAAAACGAACCACAGGGCACACGCGTTGCAGGAAAAGAGCAGCACGGTG
TCCCCTGCAACGCGTGTGGAATCAACGGGGAAAAAAAACGAACCACAGGG
CACACGCGTTGCAGGTGAACTGCAGGCGGTGCATCACGTCGCCTTTATGT
CTCGAGAGGCTGGTGCGAAGGAGAGGGGGGAAGAGGTGGTGGTGGTGAAC
TGCAGGCGGTGCATCACGTCGCCTTTATGTCTCGAGAGGCTGGTGCGAAG
GAGAGGGGGGAAGAGGTGGTGGTG
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