mRNA_P-fluviatile_contig1.118.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.118.1
Unique NamemRNA_P-fluviatile_contig1.118.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1581745..1582289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size175
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815263.4417984-CDS-P-fluviatile_contig1:1581744..15818411622815263.4417984-CDS-P-fluviatile_contig1:1581744..1581841Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1581745..1581841 +
1693561248.9731-CDS-P-fluviatile_contig1:1581744..15818411693561248.9731-CDS-P-fluviatile_contig1:1581744..1581841Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1581745..1581841 +
1622815263.453262-CDS-P-fluviatile_contig1:1582212..15822891622815263.453262-CDS-P-fluviatile_contig1:1582212..1582289Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1582213..1582289 +
1693561249.0795128-CDS-P-fluviatile_contig1:1582212..15822891693561249.0795128-CDS-P-fluviatile_contig1:1582212..1582289Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1582213..1582289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.118.1prot_P-fluviatile_contig1.118.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1581745..1582289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.118.1

>prot_P-fluviatile_contig1.118.1 ID=prot_P-fluviatile_contig1.118.1|Name=mRNA_P-fluviatile_contig1.118.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=58bp
MDSPCTATPCSLLRARINAKFDRGLNNNALPTGFIYSSHASVRRDMDNEG
SHRGSSGS
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mRNA from alignment at P-fluviatile_contig1:1581745..1582289+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.118.1 ID=mRNA_P-fluviatile_contig1.118.1|Name=mRNA_P-fluviatile_contig1.118.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=545bp|location=Sequence derived from alignment at P-fluviatile_contig1:1581745..1582289+ (Porterinema fluviatile SAG_2381)
ATGGATAGCCCGTGCACAGCAACCCCGTGCTCATTGCTGAGGGCGCGCAT
CAACGCCAAATTTGACAGAGGGCTTAACAACAATGCGTTGCCCACCGGTG
GGTCATGGTTTATAGCTAAGCGTCTGTGAACAACGATAACCAAGGCCCTA
TACGTTGCACCAAAATGCAGACATGCGGCCAAGTCGCGGTGGAGTAGTTG
ACTTTCGCGCCCATGTTCCTCCTCGAAAGAGTTCCACGACACGCTCGATA
CTTTTCTACCACTGATATTGGAAAGCATGAAAAGTATACGTCGACGGTAG
AAGTTTTTATCTCCACTACACACACCACAATCGCCGATTTAGCGCAACCT
TCTGTGTGGACAAAAAGTGCGGCCCAATCTCCTTATTACTACTTATAGTC
TAGAGTGTGCGAACAATCATCATGCAGCAGTCGTACCTCGCCGCTCGCGC
CCGGTGATATCGACCCAGGTTTCATATACTCCTCTCATGCGAGCGTGAGA
AGAGACATGGACAACGAGGGATCGCATCGTGGTAGCAGTGGCAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:1581745..1582289+

>mRNA_P-fluviatile_contig1.118.1 ID=mRNA_P-fluviatile_contig1.118.1|Name=mRNA_P-fluviatile_contig1.118.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=348bp|location=Sequence derived from alignment at P-fluviatile_contig1:1581745..1582289+ (Porterinema fluviatile SAG_2381)
ATGGATAGCCCGTGCACAGCAACCCCGTGCTCATTGCTGAGGGCGCGCAT
CAACGCCAAATTTGACAGAGGGCTTAACAACAATGCGTTGCCCACCGATG
GATAGCCCGTGCACAGCAACCCCGTGCTCATTGCTGAGGGCGCGCATCAA
CGCCAAATTTGACAGAGGGCTTAACAACAATGCGTTGCCCACCGGTTTCA
TATACTCCTCTCATGCGAGCGTGAGAAGAGACATGGACAACGAGGGATCG
CATCGTGGTAGCAGTGGCAGCGTTTCATATACTCCTCTCATGCGAGCGTG
AGAAGAGACATGGACAACGAGGGATCGCATCGTGGTAGCAGTGGCAGC
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