mRNA_P-fluviatile_contig1.117.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.117.1
Unique NamemRNA_P-fluviatile_contig1.117.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1577850..1581549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815263.39369-CDS-P-fluviatile_contig1:1577849..15779561622815263.39369-CDS-P-fluviatile_contig1:1577849..1577956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1577850..1577956 -
1693561248.8433864-CDS-P-fluviatile_contig1:1577849..15779561693561248.8433864-CDS-P-fluviatile_contig1:1577849..1577956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1577850..1577956 -
1622815263.4080255-CDS-P-fluviatile_contig1:1581467..15815491622815263.4080255-CDS-P-fluviatile_contig1:1581467..1581549Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1581468..1581549 -
1693561248.9546504-CDS-P-fluviatile_contig1:1581467..15815491693561248.9546504-CDS-P-fluviatile_contig1:1581467..1581549Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1581468..1581549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.117.1prot_P-fluviatile_contig1.117.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1577850..1581549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.117.1

>prot_P-fluviatile_contig1.117.1 ID=prot_P-fluviatile_contig1.117.1|Name=mRNA_P-fluviatile_contig1.117.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=63bp
NLLFLALCSSSLCLSPSPSYRRITRPTGRNGDAYISLWLPTISRWRVNPS
TESVFSGFQRHR*
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mRNA from alignment at P-fluviatile_contig1:1577850..1581549-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.117.1 ID=mRNA_P-fluviatile_contig1.117.1|Name=mRNA_P-fluviatile_contig1.117.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3700bp|location=Sequence derived from alignment at P-fluviatile_contig1:1577850..1581549- (Porterinema fluviatile SAG_2381)
AACCTCCTGTTCCTTGCGCTTTGCTCTTCATCATTATGTTTATCGCCGTC
ACCATCTTATCGACGGATCACGAGGCCTACAGGTGATCAGACCAACAGCA
GGTGCGCAAGTGTAACATGAAAACATGCTTCCTAGTGAACCCTCGTTTAG
AAATCGGACGTGTACTGCTCAATGCTCCCAGGCACAAGCTTCCGGTATTG
TGTATGAAAGCACTGCTGCATATTTCGCCAATATCGGTTGTTCCTTCAGG
ATCGCACGACAGAGAGGAGGGGCAAAGGAGAGCGAAAATTTGCTGCGCAT
CCGCCAACAACACAACCTCCCTTCCGCTCTCACACACGCATCATTTCAGA
GCCGCACGATTTCAGGACTCCCACGGGATACTATCAATCGCTTCGTGGTT
CCAGCGTTCGCTGCGCGCGAACCCCAACATAATTCGTTCCACTACCACGT
CACAGGAATGACGGCTTGCGTTTTCGTTTTCTTTCGCGCCTGTACATTAG
CTTTACAGGAAGCGCCCGCACCTCTTTTTTTAGGCGAGGCTCGCGGCTTG
TTTTCTGCCTGAAACGAGCACCTTTTCTTACCCCGTATTTGCCAGGTTCT
ACTTGAGTCACCTGTCACGCAGTTCGGAAAGCAGTTCCGCCCACGCTGTT
TCCGAGAAGACCCCACCATTTCTCAATCCACACAATACGTAGATGGTCTC
CCACTGGTCCTCGGTGGGGCGGTTGCCCGATTAATGTTTCTTTGTCTCGA
GGAAATTGCGGTCAATAGTCATACACAAGCAAATCAAAACAGTTTTGAAG
CTCCTTCCACGTCAAGGACAATGCCATGCTCCGCACTGCACACGCGCTTG
GAACGCAGCTCGCCCCAAGTATACGGAGGGGGTCACGCGGAAAAATGGCG
CGCGTACCGTACCCGTCTCGGCGCTTTCAGAATTATTTGAAGGATACACC
CCCCCCCTCTCGGAGATCTCGGACCTTGTGATTTGGTGGGTCGTGGTGCC
AGCCCTCGCAACCCCGCAAAGTTCTTAGCTGCCGCGTGTGGGGTTCGTTC
GCACCTGTCCCGGCATTCATTCGTACTCCTCGTAATATGCGGGTTTGCGT
TCGTTTGGCACGCCGTAAGTGAGGGCCTGTTCTTACAGCCAGGTCCTAAA
ATTTTGAAGAACTTGAGGATCAAGGTCTTTACACCCAAATTCTCAAGTGC
CGGCGCGTTCTGTACCACCTAGAAAGGAAGGTACCAAGGGTTGGATCGAA
AGTCGCGAAGAAGGGAGCAGGAGGGACGTATTTCACCAAAAGATCGCGCT
CACGCATTAACGCTTTAAGCATATGCTCACGCGATAGATGAGTGATTATT
CATGGCTGACTTTCCACGGCTTTGTGGCATTGAGTTTGCGGCAACACGCG
CGGTATGGATAGAGAGCGCATGATCCGTGCGCAGCCCACTTATAAGTTGA
CCTTGTGCGTCTTTTTGAAGTGAAATCGTGATCAAATGTGCACAACGGTG
ATGCTCATGATCACACACATTTTCGATTAATGCAGAGCTGCCTGATAGCT
GACATTTCTGCGGTTTTGCAGCACTTTGGAGAACGCTCACCACGCGTTGT
CGACAGATTAGGACTGCATCCACTTTGAACTGAATTTGGTATCGTCGCGG
CCTATTTCGGAATTCTGCATTAGAGGATTTTCAGGGGGGAGTCATCGTTT
AAGGTTCCATTTGGTGGCGTGTTTCATCACATGCCCAAGAGCTCCGCGAA
TGGCGAGTGGCACTGATGAACCGTTTGCGTGTTATGCTTCACGTCGATGG
TGCCAACGAGTCCAGGCTGCACTAGAATTTCGGACATCAACGTCACGGAA
GGAGCCGTCTTCACCTTTCATGTCCGGCTAAAAGACAAAGTCGGATGTCT
ACAGGTCCACCAAGACTCTCATCCCCACCCATGGGACTGGAGGCAGCCTT
GATCGATAACACACAGAAGTCTTGATCGAGCAGAGAGTGACAACCGTCAG
CCGGATAAGAACGCCCGTGATTCATTAAGAACATACCCAAGTTAGATATA
TTCTCCACCACGGAGCCCAAGTCTTCCACTACTGATGACAACTGGAGACC
ATGGTCTACAGCAGCGCTCCTGAAAGCGCATTTTGCATGATCGTAGAAAA
TGCGTGCTTGGAATCAAAGAGGGGGATACCAAATGAATGATGAACGATTT
CATTAAATCCACCTTCAACTAAATATAGCAACGTATTGCACAATCGAATC
GAAGTCAAACGAAGAGATTTATCGAGTACGCCAAAAAAAAAATTCCCTGA
AAAATCGAAGTTGATTGTGGAAACAAGTTTTCCGTCCTCGAGAGACGGTC
AAAATGCCTTTTGCAAGGGTAGTATCCACATCTCCCCTTATGTTTTCGAG
TCTTCTTCTTGGTCTCTAAGCAAGAAGACACATGTTGGGTAACCGAAACC
CGACTGGTTTGCGGCGAGTGGACAGCCCTTCTTATTTTCAACAATCTTTC
TTCGCGTGTTAAGCGGGCCAACCACCTTCGCCACGGCTCATCACACGTTC
CGAGAGTGCGTTCATCTGCTCTTGGTTCCATCTGCCAGTGCACGACCAAC
TTTTTCTTTCGAAATCGTGGACACTGTCAAGAGAAGAAAAAGTGCACGGG
GCCAGATGCGAACCCGCGACATTGTGCTCACAGAGCGGACGCCTTACCGC
TGACGCCAGTATGGAAATGAGTGTTCTGTCCTCGAAGGAAGGTCAGGATA
CGCTTCTCTTGTAAGGGTAGTATCCACAATGAATATTGATGTTAGGCAAA
GAGTCTCACCTCCACCATCGGGCTGGAGGCAGGCTGGAGTGAAGCACACA
GAAGTCTTGATTAACTTGAAGCAGAGAGTGGCAATCGCCAGGCGGATACG
AGCGCCCCGTGTATCAAACAAGACATACCCAAGTTAGCTCTACCACGAAG
CCCAAGTCTTCCATTACTGGTGACTACCAGAGACCACGATCGACAGGCTT
TGGAAAGCAAGATTAATCGTACTCTTGCGTGAGTCAACGCAACGACATCC
CATGCGGTGGGCGCTCAAAAACGTACCAGTGATGTGAGAGAAAACGGCTT
GGGCGCGTTCAGAGGATTCCTCTCCTGTGAAGCATATCGGTAGAGTACAT
GATGGAGCAACAACGTGTGTTGGCACGATCAAAAATGCTGTTGGGGCTGA
GATATCGAAGGCCGCAACAGCGGTGGCTATGAAATGTCCGCGAAATGGAC
CGACACCGTACATCGTCCCACAGGTGTGCTTGCCGCGCTGACCCCGCTCT
CCAATACCAGGGGCCGACAGCAGAATGAAAGTCACATGCTCACCAATACT
AATTATGAATGTCCACGGCCGGGAGGTGTGTGATGCTTTTAGCCACTTGC
GGTATACTTTGTTTTTTCCCGTCGCATGATACAGGAAGACTCTCTCTCCT
GACCAAGAGAAACAGCCAAGCAAATCTCAGTCGCACAGATTTGCTGTAAA
CACGGGTGACAAAGCAGGCAGCGGTTGAATGCCGAGCTTCATTGTCTTAG
AACATTTCTTATGGACCGTTCCCTCCTGCGTTGTGTCACCTAGGTCGGAA
TGGGGACGCGTACATCTCTCTATGGCTGCCAACAATATCGAGATGGAGGG
TGAATCCATCGACAGAGTCGGTTTTCTCCGGGTTTCAGCGGCATCGGTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:1577850..1581549-

>mRNA_P-fluviatile_contig1.117.1 ID=mRNA_P-fluviatile_contig1.117.1|Name=mRNA_P-fluviatile_contig1.117.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=378bp|location=Sequence derived from alignment at P-fluviatile_contig1:1577850..1581549- (Porterinema fluviatile SAG_2381)
AACCTCCTGTTCCTTGCGCTTTGCTCTTCATCATTATGTTTATCGCCGTC
ACCATCTTATCGACGGATCACGAGGCCTACAGAACCTCCTGTTCCTTGCG
CTTTGCTCTTCATCATTATGTTTATCGCCGTCACCATCTTATCGACGGAT
CACGAGGCCTACAGGTCGGAATGGGGACGCGTACATCTCTCTATGGCTGC
CAACAATATCGAGATGGAGGGTGAATCCATCGACAGAGTCGGTTTTCTCC
GGGTTTCAGCGGCATCGGTAGGTCGGAATGGGGACGCGTACATCTCTCTA
TGGCTGCCAACAATATCGAGATGGAGGGTGAATCCATCGACAGAGTCGGT
TTTCTCCGGGTTTCAGCGGCATCGGTAG
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