mRNA_P-fluviatile_contig1.115.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.115.1
Unique NamemRNA_P-fluviatile_contig1.115.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig1.115.1 vs. uniprot
Match: D7G9G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G4_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 6.540e-41
Identity = 73/83 (87.95%), Postives = 78/83 (93.98%), Query Frame = 3 
Query:    3 FTLKSPIKVMRTDLLEQQQGVSELYRNTYVKAIMRGDGSFLVLWAGALNTDWEQEGGAKNRLKEIVDSFRLEGLIVDGVRLGA 251
            F LKSPIKVMR DLLE++QGVSELYRNTYVKAIMRGDGSFLV+WAGALNTDW+QEGGAK+RLK   DSFRLEGLIVDGVRLGA
Sbjct:  156 FMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMRGDGSFLVVWAGALNTDWDQEGGAKDRLKVATDSFRLEGLIVDGVRLGA 238
[Close]
BLAST of mRNA_P-fluviatile_contig1.115.1 vs. uniprot
Match: A0A6H5KHB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB6_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.370e-39
Identity = 72/83 (86.75%), Postives = 78/83 (93.98%), Query Frame = 3 
Query:    3 FTLKSPIKVMRTDLLEQQQGVSELYRNTYVKAIMRGDGSFLVLWAGALNTDWEQEGGAKNRLKEIVDSFRLEGLIVDGVRLGA 251
            F LKSPIKVMR DLLE++QGVSELYRNTYVKAIMRGDGSFLV+WAGALNTDW+QEGGAK+RLK   DSFRLEGLIV+GVRLGA
Sbjct:  220 FMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMRGDGSFLVVWAGALNTDWDQEGGAKDRLKVATDSFRLEGLIVEGVRLGA 302
[Close]
BLAST of mRNA_P-fluviatile_contig1.115.1 vs. uniprot
Match: A0A835Z4Q3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Q3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.860e-16
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 3 
Query:    3 FTLKSPIKVMRTDLLEQQQGVSELYRNTYVKAIMRGDGSFLVLWAGALNTDWEQEGGAKNRLKEIVDSFRL 215
            F +K+ + V R DLLE+++GV ELYR TY KA+MRGDG+FL+ WAGALNT+W +   A++ L  +V SF L
Sbjct:  158 FMIKTRVPVQRPDLLEKERGVRELYRLTYGKALMRGDGTFLLCWAGALNTEWGEPTNARDTLAAVVASFHL 228
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G9G4_ECTSI6.540e-4187.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHB6_9PHAE1.370e-3986.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z4Q3_9STRA3.860e-1654.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1570403..1571532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue9.8e-30
Seed eggNOG ortholog2880.D7G9G4
EggNOG OGs2CG9T@1,2S9FD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_000820.1
Exons2
Model size860
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.115.1prot_P-fluviatile_contig1.115.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1571006..1571503 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815289.158167-UTR-P-fluviatile_contig1:1570402..15710051622815289.158167-UTR-P-fluviatile_contig1:1570402..1571005Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1570403..1571005 -
1693561401.7879472-UTR-P-fluviatile_contig1:1570402..15710051693561401.7879472-UTR-P-fluviatile_contig1:1570402..1571005Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1570403..1571005 -
1622815289.1980507-UTR-P-fluviatile_contig1:1571503..15715321622815289.1980507-UTR-P-fluviatile_contig1:1571503..1571532Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1571504..1571532 -
1693561402.68652-UTR-P-fluviatile_contig1:1571503..15715321693561402.68652-UTR-P-fluviatile_contig1:1571503..1571532Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1571504..1571532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815289.1775117-CDS-P-fluviatile_contig1:1571005..15711241622815289.1775117-CDS-P-fluviatile_contig1:1571005..1571124Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1571006..1571124 -
1693561401.8067212-CDS-P-fluviatile_contig1:1571005..15711241693561401.8067212-CDS-P-fluviatile_contig1:1571005..1571124Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1571006..1571124 -
1622815289.1878295-CDS-P-fluviatile_contig1:1571394..15715031622815289.1878295-CDS-P-fluviatile_contig1:1571394..1571503Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1571395..1571503 -
1693561402.087021-CDS-P-fluviatile_contig1:1571394..15715031693561402.087021-CDS-P-fluviatile_contig1:1571394..1571503Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1571395..1571503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.115.1

>prot_P-fluviatile_contig1.115.1 ID=prot_P-fluviatile_contig1.115.1|Name=mRNA_P-fluviatile_contig1.115.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=76bp
MRTDLLEQQQGVSELYRNTYVKAIMRGDGSFLVLWAGALNTDWEQEGGAK
NRLKEIVDSFRLEGLIVDGVRLGAA*
back to top

mRNA from alignment at P-fluviatile_contig1:1570403..1571532-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.115.1 ID=mRNA_P-fluviatile_contig1.115.1|Name=mRNA_P-fluviatile_contig1.115.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1130bp|location=Sequence derived from alignment at P-fluviatile_contig1:1570403..1571532- (Porterinema fluviatile SAG_2381)
AGTTTACGCTGAAGTCGCCCATCAAAGTCATGCGGACTGATCTGTTGGAG
CAACAACAAGGCGTGAGCGAGCTTTACCGGAACACGTACGTCAAGGCGAT
CATGCGCGGCGACGGTAGCTTTCTCGTTCTCTGGGCAGGTGCGTTGTTGT
CAATAGCTCGCTTCGAGGGACCGGTAGACATGTAGAGAGAGAAATACGCA
TGTGGCCCCGCGAAACGCGACAGCTCTTGCTGTGATCTCGTCCTTGCAAG
TTATTGTTTGTTCGGTTATGCACGGTCCGATTGCTTTCGTCATCCGCCCC
GAGTACTGGGGATTGAGGTGGAGTGATGTGAAATGCGTTGTCGCTGGCCA
TCTTCAATCTGATTAAACAAATGTTACCGCTTCACGGCCTGGCTCGCGTT
GCTAGCAGGAGCATTGAACACGGACTGGGAGCAGGAAGGAGGCGCCAAGA
ATCGCTTGAAGGAGATCGTTGACTCGTTCCGCCTTGAAGGGCTAATCGTG
GATGGGGTGCGGCTTGGTGCTGCGTAACGCTTTCTATGAGACATCTGACG
ACCCGTTCCGCAGGGCCCAGCATCGCTGGGAAGTGTTTGGAGCCCTCCTC
GTTGTCGTTTCCACGGCCCATGGCATCGACGGCACGACGGCCTCGGGGTG
TTTGCAGAGAGCAACGGGTTGTTGTTGAGACACACAAAAATCGTGTATGG
TGCTCACCATAGGTTGAAGACTGGACCAGTGGTGCAGGGTTGGGGTCTGG
CCCACGCCAAGCCCAATGCCCGATGAGTGCATGGAAAATTGTCTGACAGG
CAGGCCAGAAAGCGCTTCCTGCGACTGAACTTCGTAATGGACGCGAGCGG
TCATGGTGGAATGAAAAACAGCACGTTAAAACAGCTTCGCCAGTCTCCGG
TCTCTCAATTGATATTCACGTGCACTTCGCGGCTAGAACATGGTGTGCTT
CGAAGTACTTTCTAACCGGTTATTCAAAAGCGTTGGGAAAGATTGTAGGC
GTAATTTGGGTGCAACTGAAAAAGGGAGTCCGAATCCATTTCTTGGTGAA
ATTGAAGGCAAGCATGCATCGTTGTTGGAATATCAAGACCCATCAACTCA
ATAATTGTTTCTTCCCCCACTTGGGATCCC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:1570403..1571532-

>mRNA_P-fluviatile_contig1.115.1 ID=mRNA_P-fluviatile_contig1.115.1|Name=mRNA_P-fluviatile_contig1.115.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=456bp|location=Sequence derived from alignment at P-fluviatile_contig1:1570403..1571532- (Porterinema fluviatile SAG_2381)
ATGCGGACTGATCTGTTGGAGCAACAACAAGGCGTGAGCGAGCTTTACCG
GAACACGTACGTCAAGGCGATCATGCGCGGCGACGGTAGCTTTCTCGTTC
TCTGGGCAGATGCGGACTGATCTGTTGGAGCAACAACAAGGCGTGAGCGA
GCTTTACCGGAACACGTACGTCAAGGCGATCATGCGCGGCGACGGTAGCT
TTCTCGTTCTCTGGGCAGGAGCATTGAACACGGACTGGGAGCAGGAAGGA
GGCGCCAAGAATCGCTTGAAGGAGATCGTTGACTCGTTCCGCCTTGAAGG
GCTAATCGTGGATGGGGTGCGGCTTGGTGCTGCGTAAGAGCATTGAACAC
GGACTGGGAGCAGGAAGGAGGCGCCAAGAATCGCTTGAAGGAGATCGTTG
ACTCGTTCCGCCTTGAAGGGCTAATCGTGGATGGGGTGCGGCTTGGTGCT
GCGTAA
back to top