mRNA_P-fluviatile_contig1.112.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.112.1
Unique NamemRNA_P-fluviatile_contig1.112.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1522807..1525421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1586
Cds size807
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.112.1prot_P-fluviatile_contig1.112.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1523683..1524908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815288.120754-UTR-P-fluviatile_contig1:1522806..15228881622815288.120754-UTR-P-fluviatile_contig1:1522806..1522888Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1522807..1522888 +
1693561391.0729299-UTR-P-fluviatile_contig1:1522806..15228881693561391.0729299-UTR-P-fluviatile_contig1:1522806..1522888Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1522807..1522888 +
1622815288.1342812-UTR-P-fluviatile_contig1:1523498..15236821622815288.1342812-UTR-P-fluviatile_contig1:1523498..1523682Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1523499..1523682 +
1693561391.0853481-UTR-P-fluviatile_contig1:1523498..15236821693561391.0853481-UTR-P-fluviatile_contig1:1523498..1523682Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1523499..1523682 +
1622815288.2022126-UTR-P-fluviatile_contig1:1524908..15254211622815288.2022126-UTR-P-fluviatile_contig1:1524908..1525421Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1524909..1525421 +
1693561391.1166677-UTR-P-fluviatile_contig1:1524908..15254211693561391.1166677-UTR-P-fluviatile_contig1:1524908..1525421Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1524909..1525421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815288.1460137-CDS-P-fluviatile_contig1:1523682..15239401622815288.1460137-CDS-P-fluviatile_contig1:1523682..1523940Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1523683..1523940 +
1693561391.0955-CDS-P-fluviatile_contig1:1523682..15239401693561391.0955-CDS-P-fluviatile_contig1:1523682..1523940Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1523683..1523940 +
1622815288.1864893-CDS-P-fluviatile_contig1:1524359..15249081622815288.1864893-CDS-P-fluviatile_contig1:1524359..1524908Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1524360..1524908 +
1693561391.105022-CDS-P-fluviatile_contig1:1524359..15249081693561391.105022-CDS-P-fluviatile_contig1:1524359..1524908Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1524360..1524908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.112.1

>prot_P-fluviatile_contig1.112.1 ID=prot_P-fluviatile_contig1.112.1|Name=mRNA_P-fluviatile_contig1.112.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=269bp
MLKIPPRQPSDDEPEAPKVINATIMREGKLVSGFVMVAASSAPRESESIR
GCDQDSDEIVNVDARVRTLLEDFTKLLAPSVTSFDKVSTPASAGIEDRAW
MLLNHREHKPPNNQDDVILPFGSGERRWNLEAHGDIVSEHRTGPSPQEND
RNRRRFLLHHDESEDTASSFALSSSASLSERGKAHNVEKGCGLQQANIRN
PEEVSLPADYPFSSPRSVKSGDFWRRMDSIRDDPIITELFHRLREIEAEI
VRRHTATWNDANRSDLRK*
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mRNA from alignment at P-fluviatile_contig1:1522807..1525421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.112.1 ID=mRNA_P-fluviatile_contig1.112.1|Name=mRNA_P-fluviatile_contig1.112.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2615bp|location=Sequence derived from alignment at P-fluviatile_contig1:1522807..1525421+ (Porterinema fluviatile SAG_2381)
GTGCAAGCGAGAAAAGCAGAAGAATCGGCAGCAGCAACGAGGAGCGCCCA
CATTTCCGGCATCATCACAGCACAAAGACAAGGTCGAAAAGTCCAAGAAT
TCAATGGACTTGTGTTTAATGAAGTTTTGGTAGAGCGAAATACAGCAGTA
TGGCCTACTCGGTTGTCAACACTTTCGGAGGTATTCATGCCGGCTGAGGC
GCGCAGCACTCTCCGCGCTGTGTGCACTATGCCGACCGGTGATGTCGTTG
AGGGCAAAGATTATCCTTCGGCTGCAATTAAAGCGCGAGGGGCGGTGACA
ATTGCCGTGTGTGATAATGGAAGGGTACTTGAGGCCACTCACAAGCCACT
GCTGGACGATTGCAACCCGGCGGGGATTCACTGATGGCGGACTCGTTTCA
GTAATGAAGAGGTGCTGAAGTCGGCTGGATCACGCACAATGCCACTACCC
TGCTGACGCAGTGTCACTAAAGTCGATGGAGAAAGTGGCATGGTCCTGCA
AGGACCAGGCAGCCCTAATATGCCTGCCTAATGGCGGCGCCGTTGCGTCG
GCCCCTTCATTTACGACGGACCCCAAGACAAAAGATGCATCTCTTTGAAT
CGCCTTCCTCTTGGATTCCTTTCACTTCTCGGTGGACAGCTCGATGCTCA
GCCCTAAATTTTGTACATTCATATTGGATTGCGTTTATGTAGGTGGGCCC
CGCCTGAACACGGCTCGCTGAGCATCCAAGCCGGTGCAAAGCAGGTCCAT
CCCCTCTTGCAACTGCGTCGAGGCGACGCTCAATCTAGCTGCTCGGAGGA
TGGACGCTTGGCAATTGACCAAATTGGTGCGCTTGAGGAAGCACGCGTCT
CACCTTCCTCGGGTCCAACTCGTCCTATGCTTAAAATACCGCCCAGGCAG
CCTTCAGATGACGAGCCGGAGGCACCCAAGGTAATCAATGCCACCATCAT
GAGAGAGGGAAAGCTCGTTTCAGGATTCGTTATGGTTGCTGCAAGCTCTG
CACCCCGTGAATCTGAATCTATCAGAGGATGTGATCAAGATTCCGACGAG
ATTGTGAATGTGGACGCCCGCGTTCGCACATTGCTCGAAGACTTTACGAA
GCTGCTCGCGCCATCAGTAACTTCATTTGACAAGGTCGAGCGGAATCGCG
TCGTTTGTGTAGTGGCGACGGTTTAGATATCCGCGCATCTTCTCCCTTCG
CTAGTGTTTCGTCTCCAGCTGGACGCTTCTTCACGCAGAGCTACCCCGGT
CTGAGAATTTCAAACCTCGACTTTGTGATTTGGTCAACGTGGGATCCGGG
CTTTCAGCCTTGCGGCAACAAGACGGCCGTTGAGGAAGGTCTCCATTCGG
AGCTGTTTTCAGCTTGCCTTTGGGTACTTTTTTCGAGTCGATGACGCTAC
CCCGCGAGGGAAAGCGTTAATTCGCTACATTTGATAGTTTCACCTTTCTT
AATACGCGATGCTTGTCCGAAGTATTGTTTTTGCAGGTTGTGAAGCTGTT
TTCTTTTTTTGTTCCCGCGACGACTGACGCGGGGTTCTTTGTACCGCATG
CAGGTATCAACACCTGCTTCCGCTGGCATAGAGGATCGTGCGTGGATGCT
TCTGAATCACCGCGAGCATAAGCCTCCAAACAACCAAGACGATGTAATAT
TGCCTTTTGGTTCTGGCGAACGCCGTTGGAACCTTGAGGCACATGGCGAC
ATCGTCTCCGAACATCGCACAGGGCCTTCACCGCAAGAGAATGACCGGAA
CAGACGACGTTTTCTCCTCCACCACGATGAATCAGAGGATACAGCAAGTT
CTTTCGCGTTGTCCTCCAGTGCAAGCTTGAGTGAGAGGGGAAAGGCACAC
AATGTCGAGAAAGGATGTGGTCTCCAACAGGCAAACATTCGGAATCCTGA
GGAAGTCAGCCTGCCTGCCGATTACCCCTTTTCGAGCCCGCGCTCGGTCA
AAAGTGGAGATTTCTGGAGGAGAATGGACTCGATACGCGACGATCCGATA
ATCACAGAACTATTTCACCGACTTCGTGAGATTGAAGCGGAGATCGTGCG
GCGGCACACTGCCACGTGGAACGACGCGAACCGAAGTGACTTGAGGAAAT
GAATGAAGCCGGCACGTTGCTGCCATCAAGGGTAAAGCCTTTCCGATATT
CAGGAGTTAAGTCATGGGATCCCGTAAAAGCCGATCAACGTCGACGGGCC
GCCCCAGATTTGAACGATTTGTCTGCACGATCTGCTTGCGGAGGACCGCA
GTGGAAGTCTAGATTGTAGGCCGCAATTCCTTTTGGCAAATCTGCACGCG
ACTCAGAGGCTGTTTAATTGCAGCAGCTACCTGTGCTGCAGCAAGACGAG
GTGACGCTTAATAACTTTCCTCAGTCCTCCTCATGAGATAAAGAAAGTAG
TTCGAAAACGCGCAAATCTGTGAGCATCTGAGGATCGCATGCAACAGACG
CATCTTGTGCGCATCTTGTTCGTAGCGGAATGGAGATTGTCAGGTGGCGT
TGTAGTTTGGTGCCTCCGGCGCGGGCTCCAGTGGTGGAAATAAAAGGACA
GCAGCGAAAATAGCCGCTAAAATAACGGAAATAAAGAAAAACTATCCGCA
GCCGTGAAAGGCTGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:1522807..1525421+

>mRNA_P-fluviatile_contig1.112.1 ID=mRNA_P-fluviatile_contig1.112.1|Name=mRNA_P-fluviatile_contig1.112.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1614bp|location=Sequence derived from alignment at P-fluviatile_contig1:1522807..1525421+ (Porterinema fluviatile SAG_2381)
ATGCTTAAAATACCGCCCAGGCAGCCTTCAGATGACGAGCCGGAGGCACC
CAAGGTAATCAATGCCACCATCATGAGAGAGGGAAAGCTCGTTTCAGGAT
TCGTTATGGTTGCTGCAAGCTCTGCACCCCGTGAATCTGAATCTATCAGA
GGATGTGATCAAGATTCCGACGAGATTGTGAATGTGGACGCCCGCGTTCG
CACATTGCTCGAAGACTTTACGAAGCTGCTCGCGCCATCAGTAACTTCAT
TTGACAAGATGCTTAAAATACCGCCCAGGCAGCCTTCAGATGACGAGCCG
GAGGCACCCAAGGTAATCAATGCCACCATCATGAGAGAGGGAAAGCTCGT
TTCAGGATTCGTTATGGTTGCTGCAAGCTCTGCACCCCGTGAATCTGAAT
CTATCAGAGGATGTGATCAAGATTCCGACGAGATTGTGAATGTGGACGCC
CGCGTTCGCACATTGCTCGAAGACTTTACGAAGCTGCTCGCGCCATCAGT
AACTTCATTTGACAAGGTATCAACACCTGCTTCCGCTGGCATAGAGGATC
GTGCGTGGATGCTTCTGAATCACCGCGAGCATAAGCCTCCAAACAACCAA
GACGATGTAATATTGCCTTTTGGTTCTGGCGAACGCCGTTGGAACCTTGA
GGCACATGGCGACATCGTCTCCGAACATCGCACAGGGCCTTCACCGCAAG
AGAATGACCGGAACAGACGACGTTTTCTCCTCCACCACGATGAATCAGAG
GATACAGCAAGTTCTTTCGCGTTGTCCTCCAGTGCAAGCTTGAGTGAGAG
GGGAAAGGCACACAATGTCGAGAAAGGATGTGGTCTCCAACAGGCAAACA
TTCGGAATCCTGAGGAAGTCAGCCTGCCTGCCGATTACCCCTTTTCGAGC
CCGCGCTCGGTCAAAAGTGGAGATTTCTGGAGGAGAATGGACTCGATACG
CGACGATCCGATAATCACAGAACTATTTCACCGACTTCGTGAGATTGAAG
CGGAGATCGTGCGGCGGCACACTGCCACGTGGAACGACGCGAACCGAAGT
GACTTGAGGAAATGAGTATCAACACCTGCTTCCGCTGGCATAGAGGATCG
TGCGTGGATGCTTCTGAATCACCGCGAGCATAAGCCTCCAAACAACCAAG
ACGATGTAATATTGCCTTTTGGTTCTGGCGAACGCCGTTGGAACCTTGAG
GCACATGGCGACATCGTCTCCGAACATCGCACAGGGCCTTCACCGCAAGA
GAATGACCGGAACAGACGACGTTTTCTCCTCCACCACGATGAATCAGAGG
ATACAGCAAGTTCTTTCGCGTTGTCCTCCAGTGCAAGCTTGAGTGAGAGG
GGAAAGGCACACAATGTCGAGAAAGGATGTGGTCTCCAACAGGCAAACAT
TCGGAATCCTGAGGAAGTCAGCCTGCCTGCCGATTACCCCTTTTCGAGCC
CGCGCTCGGTCAAAAGTGGAGATTTCTGGAGGAGAATGGACTCGATACGC
GACGATCCGATAATCACAGAACTATTTCACCGACTTCGTGAGATTGAAGC
GGAGATCGTGCGGCGGCACACTGCCACGTGGAACGACGCGAACCGAAGTG
ACTTGAGGAAATGA
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