mRNA_P-lacustris_contig102.266.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig102.266.1
Unique NamemRNA_P-lacustris_contig102.266.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig102.266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig102contigP-lacustris_contig102:26341..27088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size241
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815289.1944454-CDS-P-lacustris_contig102:26340..264181622815289.1944454-CDS-P-lacustris_contig102:26340..26418Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 26341..26418 -
1693493453.5710166-CDS-P-lacustris_contig102:26340..264181693493453.5710166-CDS-P-lacustris_contig102:26340..26418Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 26341..26418 -
1622815289.2056441-CDS-P-lacustris_contig102:26926..270881622815289.2056441-CDS-P-lacustris_contig102:26926..27088Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 26927..27088 -
1693493453.5810013-CDS-P-lacustris_contig102:26926..270881693493453.5810013-CDS-P-lacustris_contig102:26926..27088Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 26927..27088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig102.266.1prot_P-lacustris_contig102.266.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig102 26341..27088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig102.266.1

>prot_P-lacustris_contig102.266.1 ID=prot_P-lacustris_contig102.266.1|Name=mRNA_P-lacustris_contig102.266.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=80bp
FGLGVGFGGCDARSGRGRKDSLRNRRGRKRNLRPRMAGVHPRLEKERLLQ
HQNMVKQRLDEGLSGGEAFKFLLRLVATHF
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mRNA from alignment at P-lacustris_contig102:26341..27088-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig102.266.1 ID=mRNA_P-lacustris_contig102.266.1|Name=mRNA_P-lacustris_contig102.266.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=748bp|location=Sequence derived from alignment at P-lacustris_contig102:26341..27088- (Pleurocladia lacustris SAG_25_93)
TTCGGGCTCGGGGTAGGGTTCGGCGGTTGCGACGCAAGGAGCGGCCGAGG
GAGGAAGGACAGCCTTCGGAATCGGAGGGGGAGGAAGAGAAATCTTCGGC
CTCGGATGGCGGGAGTGCATCCGCGTCTGGAGAAGGAGAGGCTTCTCCAA
CATCAGAACATGGTGAGACCATGTCCAGATTGATGAGCTCTCTTCGTTCC
CCTCGTCCCAAGCCTCGTAGGGTTCCCCCTTTGTCTTCCGTGGCAGACTC
CAACCGTGGTTGGATGTCGCGCAACAGTGTGTCGGTAGTACACAATGGTC
TCCCCCTTGGTCCCAGTTGGCTCGCACGCGTCAGGCTGAGTTGGAAGAGG
CAGCGAAGTTGGTCGAGATAGCTCGCGTTCGAGATATCGCCACCAACTAC
ACGAAAACCAAGTTGCGTGAGATTAAAATCCACCCCCGCATGCCATGGCA
GCCAAGCCTTAAAAACGCGGTGCCACAGCTCCTAGACTCCATCTCTGCCG
CGGTCCTCGACATTCTGCAACAAGCGGACCCGTTTATCGTGTTCGAAGAC
TCGGATAGTTGGTGTCGAGGATGGGAAAATCCTTTAAGGAAGGCGATGAT
TTCAGCGGTTGTCACAGAGAAAGACACGACCGGAGAACTGATTTCCTCAA
TTAACGACATGTTCACGCAGGTGAAGCAGAGGCTGGATGAGGGCTTGAGC
GGTGGCGAAGCCTTCAAGTTCCTCCTGCGGCTGGTAGCGACACACTTC
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Coding sequence (CDS) from alignment at P-lacustris_contig102:26341..27088-

>mRNA_P-lacustris_contig102.266.1 ID=mRNA_P-lacustris_contig102.266.1|Name=mRNA_P-lacustris_contig102.266.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=480bp|location=Sequence derived from alignment at P-lacustris_contig102:26341..27088- (Pleurocladia lacustris SAG_25_93)
TTCGGGCTCGGGGTAGGGTTCGGCGGTTGCGACGCAAGGAGCGGCCGAGG
GAGGAAGGACAGCCTTCGGAATCGGAGGGGGAGGAAGAGAAATCTTCGGC
CTCGGATGGCGGGAGTGCATCCGCGTCTGGAGAAGGAGAGGCTTCTCCAA
CATCAGAACATGTTCGGGCTCGGGGTAGGGTTCGGCGGTTGCGACGCAAG
GAGCGGCCGAGGGAGGAAGGACAGCCTTCGGAATCGGAGGGGGAGGAAGA
GAAATCTTCGGCCTCGGATGGCGGGAGTGCATCCGCGTCTGGAGAAGGAG
AGGCTTCTCCAACATCAGAACATGGTGAAGCAGAGGCTGGATGAGGGCTT
GAGCGGTGGCGAAGCCTTCAAGTTCCTCCTGCGGCTGGTAGCGACACACT
TCGTGAAGCAGAGGCTGGATGAGGGCTTGAGCGGTGGCGAAGCCTTCAAG
TTCCTCCTGCGGCTGGTAGCGACACACTTC
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