mRNA_P-lacustris_contig1017.247.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1017.247.1
Unique NamemRNA_P-lacustris_contig1017.247.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5K963_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K963_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 3.530e-62
Identity = 113/160 (70.62%), Postives = 130/160 (81.25%), Query Frame = -2 
Query:    2 EWNETVETRAALDSALDKRRAARHAFKSNRNTATWRILKVACKEVAAAIPTGIYAHLDRYVTELETAYKDREMRGLYKHLQKSVGLTGRHAGRQQFVKDGKGVLLRSKKGILKRWERFFDTLLNTKCPTLNPDIVDQVTQRAATIATRRLGAVPDLEEVE 481
            EWN T  +RAAL +ALDKRRAARHAFK+  N ATWRILK ACK V A I T +Y HL+ YV +LE  Y+DR+MRGLY+HL++S+GL+GR AG QQFV D  GVLLR+K  ILKRW RFFDTLLN+K PTLNPD+V+QVTQR AT ATRRL AVPDLEEVE
Sbjct:   28 EWNMTAASRAALATALDKRRAARHAFKARPNAATWRILKAACKGVKATIATSVYDHLEGYVMKLEAIYQDRDMRGLYQHLKRSMGLSGRQAGGQQFVTDENGVLLRNKNAILKRWRRFFDTLLNSKSPTLNPDVVEQVTQRPATRATRRLAAVPDLEEVE 187
[Close]
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5JTF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF9_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 1.070e-61
Identity = 108/197 (54.82%), Postives = 140/197 (71.07%), Query Frame = 3 
Query: 4092 AVRSGAPFGAAVHSAKFLEIWCANANPVESANIEGKVKGFNTCFNVKPPDDVAGATTRVT-------GPYLGPDNLHDFNHGQTCREKYGGLSSCRELSGVNLNAHEQNHAKKKKFLATVNTMGFDRFSFMVTLINEIENEVVNRRSLDALVESVTLHPGKRLTMCKALIWATGRCWCEKPLLRSYDHFGRVRLTFL 4661
            AVRSGA FG+AV   K L+I  A+  P +SA+I G V+ +   F+++P ++   AT R T       GPY GPD LHD NHG  CR+KYGG+ +C +LSGVNLNAHEQNHAKKKKFL  +N M FDRF+FMVTLINE ENE + RRS+  +V+ V  H  +++ +C+A +W  GRC+CE  L+RS+D FGRVRLTF+
Sbjct:   28 AVRSGACFGSAVQRTKALQIQVAHHQPGKSADINGIVEEYGLSFDIQPLEEDPTATVRRTHALGSNAGPYYGPDTLHDCNHGDDCRQKYGGIDTCAQLSGVNLNAHEQNHAKKKKFLHMLNVMKFDRFTFMVTLINETENEAMKRRSVANMVKRVRGHGLEKVQICQAEVWFCGRCFCENSLMRSFDQFGRVRLTFI 224
[Close]
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: D7G349_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G349_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 3.170e-59
Identity = 109/197 (55.33%), Postives = 139/197 (70.56%), Query Frame = 3 
Query: 4092 AVRSGAPFGAAVHSAKFLEIWCANANPVESANIEGKVKGFNTCFNVKPPDDVAGATTRVT-------GPYLGPDNLHDFNHGQTCREKYGGLSSCRELSGVNLNAHEQNHAKKKKFLATVNTMGFDRFSFMVTLINEIENEVVNRRSLDALVESVTLHPGKRLTMCKALIWATGRCWCEKPLLRSYDHFGRVRLTFL 4661
            AVRSGA FG+AV   K L+I  A   P +SA+  G V+ +   F+++P  +   AT R T       GPY GPD LHD NHG  CR+KYGG+ SC +LSGVNLNAHEQNHAKKKKFL  +N M FDRF+FMVTLINE ENE +NR+S+  +V+ V  H  +R+ +C+A +W  GRC+C+K L+RS+D FGRVRLTF+
Sbjct:  277 AVRSGACFGSAVQRTKALQIQVAQHQPGKSADTNGIVEEYGLPFDIQPLQEDPTATVRRTHALGSNAGPYYGPDALHDCNHGDDCRQKYGGIDSCAQLSGVNLNAHEQNHAKKKKFLHMLNVMKFDRFAFMVTLINETENEAINRKSVANMVKRVRGHGSERVEICQAQVWFCGRCFCQKSLMRSFDQFGRVRLTFV 473
[Close]
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5KIY0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY0_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 2.500e-58
Identity = 109/160 (68.12%), Postives = 125/160 (78.12%), Query Frame = -2 
Query:    2 EWNETVETRAALDSALDKRRAARHAFKSNRNTATWRILKVACKEVAAAIPTGIYAHLDRYVTELETAYKDREMRGLYKHLQKSVGLTGRHAGRQQFVKDGKGVLLRSKKGILKRWERFFDTLLNTKCPTLNPDIVDQVTQRAATIATRRLGAVPDLEEVE 481
            EWN T   RAAL +ALDKRRAARHAFK+  N ATWRILK ACK V A I T +Y H++ YVTELE  Y+DR+M GLY+HL++S G +GR AG QQFV D  GVLLR+K  ILKRW RFF+TLLN+K PTLNPD+V+QV QR AT ATR L AVPDLEEVE
Sbjct:  145 EWNMTTAARAALATALDKRRAARHAFKARPNAATWRILKAACKGVKATIATSVYDHVEGYVTELEAVYQDRDMWGLYQHLKRSTGPSGRQAGGQQFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVE 304
[Close]
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5K133_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K133_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 1.650e-57
Identity = 108/175 (61.71%), Postives = 132/175 (75.43%), Query Frame = 1 
Query: 3217 QARTIVPVILEIKGCPNCPKIEGVTGDDWREHGYFVFRQIVVHIHLLGTVRDMVHSGTPITTAWGNLLNHLSKDLDWLEEHSETAKRAVQN-DGLVKSLLEAYLAFEALTDHPYEFSSIVHGFFPPLMSCDGCNKLATSNMTLERFLAQRDKQVIDMDLSACWLTLSMLSPLVFS 3738
            Q + IV +++E KGC  C  + GV GD+W++HGYFVF +  VHI L   VR +VH GTPITTAW  LL HL  DL W+ EH + A R     DGL +SLLE +LAFEALTDHP EFSSI  G+FP + SCDGCNKL+T+NMTLE FLAQR++QV DMDL+ACWL+LS+LSP+VFS
Sbjct:   62 QDKYIVDIVIEKKGCAFCRNVRGVPGDEWQQHGYFVFGETAVHIELPLEVRALVHGGTPITTAWRGLLQHLETDLIWMGEHPKLATRVSTGMDGLTRSLLEVFLAFEALTDHPCEFSSIAAGYFPLITSCDGCNKLSTNNMTLEMFLAQREEQVTDMDLTACWLSLSVLSPMVFS 236
[Close]
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5JQV7_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV7_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 8.830e-57
Identity = 110/160 (68.75%), Postives = 129/160 (80.62%), Query Frame = -2 
Query:    5 EEWNETVETRAALDSALDKRRAARHAFKSNRNTATWRILKVACKEVAAAIPTGIYAHLDRYVTELETAYKDREMRGLYKHLQKSVGLTGRHAGRQQFVKDGKGVLLRSKKGILKRWERFFDTLLNTKCPTLNPDIVDQVTQRAATIATRRLGAVPDLEEV 484
            +EW ET ETRAAL+ AL KRR AR A + N N+ATWR+LK ACK VA A+ TGIYAHLD YVTELE  YKDR+MRG Y+HL++SVGL+GR AG QQFV D  GVLLR++  IL+RW RFF TLLNTK PTLNPDI+++VTQR AT  T+RLG VP+LEEV
Sbjct:  151 QEWCETPETRAALEQALTKRREARRAMRGNWNSATWRVLKAACKGVATAVETGIYAHLDGYVTELEAIYKDRDMRGQYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEV 310
[Close]
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5JVZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ9_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.330e-56
Identity = 107/195 (54.87%), Postives = 138/195 (70.77%), Query Frame = 3 
Query: 4092 AVRSGAPFGAAVHSAKFLEIWCANANPVESANIEGKVKGFNTCFNVKPPDDVAGATTRVT-------GPYLGPDNLHDFNHGQTCREKYGGLSSCRELSGVNLNAHEQNHAKKKKFLATVNTMGFDRFSFMVTLINEIENEVVNRRSLDALVESVTLHPGKRLTMCKALIWATGRCWCEKPLLRSYDHFGRVRLT 4655
            AVRSGA FG+AV   K L+I  A+  P +SA+I G V+ +   F+++  ++   AT R T       GPY GPD LHD NHG  CR+KYGG+ +C +LSGVNLNAHEQNHAKKKKFL  +N M FDRF+FMVTLINE ENE +NRRS+  +V+ V  H  +++ +C+A +W  GRC+CE  L+RS+D FGRVRLT
Sbjct:  368 AVRSGACFGSAVQRTKALQIQVAHHQPGKSADINGIVEEYGLSFDIQSLEEDPTATVRRTHALGSNAGPYYGPDTLHDCNHGDDCRQKYGGIDTCAQLSGVNLNAHEQNHAKKKKFLHMLNVMKFDRFAFMVTLINETENEAINRRSVANMVKRVRGHGLEKVQICQAEVWFCGRCFCENSLMRSFDQFGRVRLT 562
[Close]
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5L6W5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6W5_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 3.600e-56
Identity = 102/150 (68.00%), Postives = 117/150 (78.00%), Query Frame = -2 
Query:   32 EWNETVETRAALDSALDKRRAARHAFKSNRNTATWRILKVACKEVAAAIPTGIYAHLDRYVTELETAYKDREMRGLYKHLQKSVGLTGRHAGRQQFVKDGKGVLLRSKKGILKRWERFFDTLLNTKCPTLNPDIVDQVTQRAATIATRRL 481
            EWN T   R AL +ALDKRRAARH+FK+  N ATWRILK  CK V A I T IY HL+RYVTELE  Y+DR+MRGLY+HL++S GL+GR AG QQFV D  GVLLR+K  ILKRW RFF+TLLN+K PTLNPD+V+QV QR AT ATR L
Sbjct:   28 EWNMTTAARTALATALDKRRAARHSFKAGPNAATWRILKATCKGVKATIATSIYDHLERYVTELEAIYQDRDMRGLYQHLKRSTGLSGRQAGGQQFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHL 177
[Close]
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 3.700e-56
Identity = 110/160 (68.75%), Postives = 126/160 (78.75%), Query Frame = -2 
Query:    2 EWNETVETRAALDSALDKRRAARHAFKSNRNTATWRILKVACKEVAAAIPTGIYAHLDRYVTELETAYKDREMRGLYKHLQKSVGLTGRHAGRQQFVKDGKGVLLRSKKGILKRWERFFDTLLNTKCPTLNPDIVDQVTQRAATIATRRLGAVPDLEEVE 481
            EWN T   RAAL +ALDKRRAARHAFK+  N ATWR LK ACK V A I T +Y HL+ YVTELE  Y+DR+MRGL++HL++S GL+GR AG QQFV D  GVLLR+K  ILKRW RFFDTLLN+K PTLNPD+V+QVTQR AT A R L AVPDLEE+E
Sbjct:  415 EWNMTAAARAALATALDKRRAARHAFKARPNAATWRTLKAACKGVKATIATSVYDHLEGYVTELEAIYQDRDMRGLHQHLKRSTGLSGRQAGGQQFVTDENGVLLRNKNAILKRWRRFFDTLLNSKSPTLNPDVVEQVTQRPATRAIRHLAAVPDLEEIE 574
[Close]
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5JLY7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY7_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 8.160e-56
Identity = 105/199 (52.76%), Postives = 127/199 (63.82%), Query Frame = 3 
Query: 4086 VQAVRSGAPFGAAVHSAKFLEIWCANANPVESANIEGKVKGFNTCFNVKPPDDVAGATTRV-------TGPYLGPDNLHDFNHGQTCREKYGGLSSCRELSGVNLNAHEQNHAKKKKFLATVNTMGFDRFSFMVTLINEIENEVVNRRSLDALVESVTLHPGKRLTMCKALIWATGRCWCEKPLLRSYDHFGRVRLTFL 4661
            V AVRSGA FGAA   AK L+I     NP +SAN  G  + F   FNV PP +  GAT R         GPY  PD LHD NHG  CR+ YG + SC++LSGV L  HE NHA+KKKFL  +N M FDRF+FMV LINE ENE +NR+++  LV+ V  H   RL +C   +W  GRC+C+ PL+RS+D  GRV LTFL
Sbjct:    7 VLAVRSGACFGAANARAKALQIQLGFMNPQKSAN-NGFAEEFGLSFNVTPPAEEPGATKRRRHPWGSDAGPYYAPDTLHDCNHGIDCRQSYGWIDSCKQLSGVCLTVHEHNHAEKKKFLHMLNAMKFDRFAFMVVLINETENEAINRKTVAGLVQRVLGHSSDRLKVCMVEVWFCGRCFCKNPLMRSFDQVGRVILTFL 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K963_9PHAE3.530e-6270.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JTF9_9PHAE1.070e-6154.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G349_ECTSI3.170e-5955.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIY0_9PHAE2.500e-5868.13Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K133_9PHAE1.650e-5761.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQV7_9PHAE8.830e-5768.75Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JVZ9_9PHAE1.330e-5654.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6W5_9PHAE3.600e-5668.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQZ7_9PHAE3.700e-5668.75Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JLY7_9PHAE8.160e-5652.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1017contigP-lacustris_contig1017:34619..42294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size5333
Cds size1209
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1017.247.1prot_P-lacustris_contig1017.247.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1017 37955..40636 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815287.4696064-UTR-P-lacustris_contig1017:34618..359121622815287.4696064-UTR-P-lacustris_contig1017:34618..35912Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1017 34619..35912 -
1693493452.4675596-UTR-P-lacustris_contig1017:34618..359121693493452.4675596-UTR-P-lacustris_contig1017:34618..35912Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1017 34619..35912 -
1622815287.4834037-UTR-P-lacustris_contig1017:36277..368401622815287.4834037-UTR-P-lacustris_contig1017:36277..36840Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1017 36278..36840 -
1693493452.4794357-UTR-P-lacustris_contig1017:36277..368401693493452.4794357-UTR-P-lacustris_contig1017:36277..36840Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1017 36278..36840 -
1622815287.4929385-UTR-P-lacustris_contig1017:37345..379541622815287.4929385-UTR-P-lacustris_contig1017:37345..37954Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1017 37346..37954 -
1693493452.495937-UTR-P-lacustris_contig1017:37345..379541693493452.495937-UTR-P-lacustris_contig1017:37345..37954Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1017 37346..37954 -
1622815287.5408685-UTR-P-lacustris_contig1017:40636..422941622815287.5408685-UTR-P-lacustris_contig1017:40636..42294Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1017 40637..42294 -
1693493452.551731-UTR-P-lacustris_contig1017:40636..422941693493452.551731-UTR-P-lacustris_contig1017:40636..42294Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1017 40637..42294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815287.5042734-CDS-P-lacustris_contig1017:37954..384341622815287.5042734-CDS-P-lacustris_contig1017:37954..38434Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1017 37955..38434 -
1693493452.5066106-CDS-P-lacustris_contig1017:37954..384341693493452.5066106-CDS-P-lacustris_contig1017:37954..38434Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1017 37955..38434 -
1622815287.5128305-CDS-P-lacustris_contig1017:38820..392411622815287.5128305-CDS-P-lacustris_contig1017:38820..39241Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1017 38821..39241 -
1693493452.521525-CDS-P-lacustris_contig1017:38820..392411693493452.521525-CDS-P-lacustris_contig1017:38820..39241Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1017 38821..39241 -
1622815287.5215213-CDS-P-lacustris_contig1017:40124..403911622815287.5215213-CDS-P-lacustris_contig1017:40124..40391Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1017 40125..40391 -
1693493452.5332103-CDS-P-lacustris_contig1017:40124..403911693493452.5332103-CDS-P-lacustris_contig1017:40124..40391Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1017 40125..40391 -
1622815287.530196-CDS-P-lacustris_contig1017:40595..406361622815287.530196-CDS-P-lacustris_contig1017:40595..40636Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1017 40596..40636 -
1693493452.5431025-CDS-P-lacustris_contig1017:40595..406361693493452.5431025-CDS-P-lacustris_contig1017:40595..40636Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1017 40596..40636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1017.247.1

>prot_P-lacustris_contig1017.247.1 ID=prot_P-lacustris_contig1017.247.1|Name=mRNA_P-lacustris_contig1017.247.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=403bp
MPTEGSATECSCHGCKQTIARRLRGSERAADGAVQLSASSRATGRQAPVT
AFEFPVGKSDGESKVFSVSTTSAKHRVIVIIKERKRGEKTVRDISCTGST
CKLVGPSSRQHVGDEDNAVDGICPHAKVVLGDNEEIKQNIPAATVETLGE
EGIVARAKSVAESGCLGLKDVAEIEKLFKDAFEDGVPLLVRLGDTETFAV
RERDHRSVPGCWGHVQTVDIALAAGATPASRRRSIERPNIQCKANGGYPC
GIASGKPRGLKTCPHTLIVGLGVLGEHYRHKLAAQADVEGGGDGEDFVDS
EIGTGKAEWNNEKTRLMFVEKILHLLKVVGVLKFPVNPLLHLSKAAKDSM
VGKDAVIRCHENMCSKCNRQYVVLKKQEAIAVTQVSPTCQSVKLFADILF
VF*
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mRNA from alignment at P-lacustris_contig1017:34619..42294-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1017.247.1 ID=mRNA_P-lacustris_contig1017.247.1|Name=mRNA_P-lacustris_contig1017.247.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7676bp|location=Sequence derived from alignment at P-lacustris_contig1017:34619..42294- (Pleurocladia lacustris SAG_25_93)
TCTCCACCTCCTCGAGGTCTGGCACCGCTCCCAGCCGTCGGGTTGCTATC
GTCGCCGCTCGCTGTGTCACTTGGTCTACGATGTCCGGGTTGAGGGTGGG
GCACTTGGTGTTGAGGAGGGTGTCGAAGAATCTTTCCCATCGCTTGAGGA
TGCCTTTCTTGCTCCGGAGCAGCACGCCTTTCCCGTCCTTGACGAACTGC
TGCCTCCCCGCGTGTCTCCCGGTGAGGCCCACAGACTTCTGGAGGTGTTT
GTACAGCCCCCGCATTTCGCGGTCCTTGTAGGCCGTCTCGAGCTCCGTCA
CATATCTATCCAGATGTGCATAGATACCCGTCGGGATTGCTGCCGCCACC
TCCTTACACGCCACCTTGAGTATCCTCCATGTTGCGGTGTTCCTGTTGCT
TTTGAAAGCGTGGCGCGCTGCCCGCCGCTTGTCAAGGGCGCTATCCAAGG
CTGCTCTCGTCTCTACAGTCTCGTTCCACTCCTCTTATGCAAGGAGTAAA
GACGCAAGTTGGTGACTATATAAATGAAGTCATTGCTAATCTATCTTGGG
CAGCATTCCACAGATAGAGATGGTTTTGTTTTGTTTAGTAAGAAAAAAAA
AAAAAACATACTCAGTACTTGGCCGAAGAGGACGCCGAATGGCAATACCG
CCGAAAACTTTCCGCCATATTCATGTCTAACCGCCTCCGCCAAAAAGCCT
TACAATGTACCACGAAATATTCGCAAAACCGCCACCCGCCAAAAACCTAC
CGCCGGACGGCATTAGGGCCCCGCCTGCGCCCGCCATAAAAAAGTTACTG
CCGTAACCCTTGGAGAAATGGTAAGCCAACGATGACACCGTGATTTTTTA
CATCCTTGCGGACATGGATCAGGTTGTCTGCGGGGAGAGTGCGGGTGCGG
GCGCAAGAGACCAACCGGCGGTTCGATGGAAAAGGGTGGCGGACCCAATG
GCAGGGAGGTGGATGATGGATGCAGTGGTATTGGGAGTAATGGGGGGGGT
GGAAGCGCCGATAGAAGTGAGAGGATAGAGGAAGAGAAGAGGCCGCGAAG
GTGGTCACGGCCGCGGCAACGGAACGGGGGTAGAGGCCAAGGTGGGGGAC
ATTTCTCTACCGATCCTGCATTTGGGGAGAATGCCCTGGGTACATCTGCT
CGGACAAAAGAGGTCACACGTGCACTGGTTGGTGCGGATACCACTGGTGC
TACAAGCTCATTGGCGATCACGTACCACCGGTTTCAGGCTATCGAACCGG
GATGAGTGGTGTGGGGTTGGGGTTACGCCTGTGGAGGTGTTGCTTGGGGA
GTAGGAGGGCCTTCCGGGAATGGGGCGTTTAGAAAACACTTCGCCACCCC
TGCTTCCCCGGAGGATGCCACCCCTGCTTCCCCGGGGTAGCACCGTTAGT
CGGGTTTCCACCGTTAGCCCTCCTTTGTCAACCGAGAGGAATGCTCCCGC
GAGCGTGAAGGAATGCTCCCGCGAGCGTGCCACCCGGGTTGAAGTTGTAC
AAGACCTGTTGGTGGTGTTCGGCTGAATACAGCGAGGGAAAGATCCTACC
AAGCTCTGCACTGGTTCGAAGTGTAAGCGGTGGTTGTGTCACCGAACGGA
ATGCACAAAAATCGGCGCGAAATCGGACCGGTTCCGCTGCTGCCACTGCA
CAAGAAAGATGCCGACGGAGGGAAGCGCGACAGAGTGTTCGTGTCACGGG
TAAGAACGGGTGAGAGGCCACACATACATTTTGGTTGTGACTATTGTTGT
TGCTTTTACCGTGTCGTTTTTTTAAGCAATTACCAATCTTTCAAACGTCG
CAACAACCACGAATGCTGTCTTCGTGATGGTGTGACCGTGCGCCTTAATT
TTGTGAGCATTCCTCTCGCTTGTATGTACCCGACCCTTGTTTATTCCGCA
CAGCTGCAAGCAGACCATAGCGAGGAGGTTGAGGGGCTCTGAACGAGCTG
CAGATGGCGCCGTCCAACTAAGTGCCAGCTCGAGAGCGACCGGCCGCCAG
GCGCCAGTCACTGCATTCGAGTTTCCAGTCGGGAAATCTGATGGCGAATC
CAAAGTTTTCTCGGTTTCAACCACATCTGCCAAGCATCGTGTGATCGTCA
TCATCAAGGAAAGGAAGCGCGGCGAAAAAACAGTTCGAGACATCAGCTGT
ACCGGCAGCACATGCAAACTGTGAGTGGTGCCAGGCGAACGAGCTTGCCA
CAAGGCTCCAAGTATGAACGAAAGCTACTGCTCTCGCGCTTTTTTTGTTC
AATTTGCATGGTCGAACAGGGTGGAACGCTGATTTTAAGATTTCGTCTCT
TTGCAGGGTCGTCGTTAGGTTCGTACTTATTCAAACTTTTTCGAAATGTT
GTATGCACACCGTAGTCCCCTTTAAGTTTTCCCCGGGGAGGGATTTTATT
TTTGGCAGATTTTTTTTTCCCCTAGGTATATATTCAGGGAGGAAATATAT
ATATATTATATGTATTTGTTTTTTAAACCCGGGGGATCTCCCGGGATTGT
TGTTGTTGCTGTTGTCTTCACATTAAAAACCATCCCTGTTTCTTTATCCA
GTACCTCCGTCTGTCACATTCTCTCCGTACTAATCCAACACTTGACGCGG
TCAGTCCCCGTGGTCACAGGCTAACTAACCTAGAAAATGTATACAAAAAG
AATGGACCCGGAGCGTTCCCAGAGCGCCAAAAAAAAACAGCCGCCAAAAA
AACAAAAAAGTTGCATACGCGCACATATCCAGCAATGCCAAAACATTCGG
AACATCGACGCGCATGTGCAGTTGCATACATCCGTTCTTTGTTCACACTC
GTCTCCAACTCTCTCTCCGGTGCCAAATGGAAACGGCATGTTCGGTGCCA
AAAGCGGAGTATTTGCTTTGCAGTGATGTCTCGTCGCATAAAACTACCGT
AAAAACTCATAAAACCCTTGATTTCTCCCCCGGGAGGATACCCCGTAGTC
GATTTTGTTGTGGAGGTAAGCGTCTGTGCATCTGTTCACCGCCATGAGGA
GAACAGTTTCATATTTGTTCATGTTTCGCTCATGTTGTGTGGTCCCCGCG
CAGTGTCGGTCCGTCATCACGCCAGCATGTTGGTGACGAGGATAATGCCG
TTGACGGTATTTGCCCGCATGCGAAGGTCGTGCTCGGAGATAACGAGGAA
ATCAAGCAAAATATCCCTGCCGCTACGGTTGAAACCTTGGGCGAGGAAGG
GATAGTTGCCCGTGCCAAATCCGTTGCGGAAAGTGGATGCCTGGGTCTCA
AGGATGTAGCCGAAATTGAGAAGCTGTTCAAGGATGCTTTTGAAGACGGC
GTGCCGCTGCTTGTTCGACTCGGAGACACAGAGACGTTCGCCGTGCGGGA
AAGAGACCATCGTTCCGTGCCGGGTTGCTGGGGGCACGTTCAGACAGTCG
ACATAGCGCTAGCGGCTGGTGCTACACCGGCATCACGAAGGAGGAGCATC
GAGAGACCAAATATTCAATGCAAGGTGACCATAACGTTTTGGGTTGCAGT
AAGTAGTTACGATGGCTGTCCAATATTCTTCACGTGCGTGACATGGACGC
ATACTATAGGACTTGGACACCAGAAACGAACCCACCAACCTCGTATCGCA
TCCTCAACCTGCCATCAAGCCTGAAATATGCTGAAGAGATGGAGCATTGG
GCGAGCACCCTGAGTCGGTAGGGGATTCAGTGTCATGAACGTCGCCGGTG
TTCAATACACAGTTCGGACAATGCACGCACGGGTGGTTGTTGGTTGTGTC
AGCCAAGCTTGGTGACATCAACGCCGAAGAAAAAAGCGCGTGCAGAATGA
CACAACTCCCCTGCCGGAAAGAAGTTTGAACGCCTTCCTTGAACCCGTTG
ATTTTCACAGGCAAACGGCGGGTATCCATGTGGTATCGCAAGTGGGAAGC
CCAGGGGCTTGAAAACATGCCCGCACACCCTGATAGTTGGGCTGGGTGTG
CTGGGCGAGCACTACCGACATAAGTTGGCGGCACAAGCGGACGTAGAGGG
GGGAGGGGACGGAGAAGATTTTGTCGACTCGGAGATCGGCACAGGGAAAG
CCGAATGGAACAACGAGAAGACCCGGTTGATGTTCGTAGAGAAGATACTG
CACCTATTGAAGGTCGTCGGGGTGTTGAAGTTTCCCGTAAACCCCTTGCT
GCACTTATCGAAAGCTGCGAAGGATTCCATGGTGGGTAAGGACGCCGTGA
TCCGTTGCCACGAGAACATGTGCTCGAAATGCAACCGACAGTACGTGGTC
TTGAAGAAGCAAGAAGCCATAGCAGTGACCCAGGTGAGCCCCACGTGCCA
GAGTGTAAAGCTTTTCGCCGATATATTGTTTGTGTTTTAAGAGAAGTTGA
AATCCTCCCTGACGGATAAGCTACGTGTCTTTTTGAGTTGCCTACACACC
GTTTTGTCGTCCCTCCAAACGTGTCATGGAGTGTTTTTGCCTGAAAAATG
TAATTTGATAGTAGACGAACATGTAAGTGAACACTGCGGCAGCACATCGT
TTCACGGTGAGCAGGGTATCATGTGTCCATTTTGTTTTTCCGTCCCATTT
CTTTACTCTGAATGAAACAATATGACCGTGGCAAGAACTACCTTTCCGAG
CTACTCCTCGTTGCCAGTAATGTGCTCTGTCACGTGGTGTGTGTCACGAC
GTAAAAGGCATGATACATGACGCTTCTTTACGTTGTTCCCAGGCAAGGAC
CATTGTTCCCGTCATTCTTGAGATCAAAGGATGTCCAAATTGTCCCAAGA
TTGAAGGGGTGACGGGCGACGATTGGCGCGAGCATGGTTACTTCGTCTTC
CGCCAAATCGTCGTCCACATCCACCTCTTAGGGACAGTGAGGGATATGGT
TCACAGCGGTACTCCGATCACGACCGCATGGGGAAACTTACTCAATCACC
TCTCGAAGGATCTGGATTGGTTGGAAGAACACAGTGAAACGGCGAAGAGG
TGAAAAAGGTCCATCTTTGATGTTTGTGTGGTCCCTCGTGTGTTTGTGCC
ACAATTTTGGATTCAATGTCTAGTTCGGGGTATCGTATTGATCATCGCAA
GGTCCCGTTTCCGCTCTTTATTTCGAAGGCAGCCGTTCTCTGGGTGCATA
ACTCGTTCGGTTTTTGTTTCCTTACCAAGGGGATGCCGCGGGTATTGTAG
TTTGATGATACATGGTGTGTGTTGACGTCCCGCTATTCTCAACGCTACTC
TAATATACGTATTTCGGTGATGATGTTGGTGGGCGCTCAGCGGGGGCCAC
ACGGGAAGGAGGCCACTCAGTATTTTTTTCTCCGCCGTTATTTGGCGGTG
CTTTCCTTCATTGTTTTCTCGCAAGAAGGGTTCAGCTGCCCCTTTCTGTC
GTCGCCCGTTAAGTCGAATTTTCGAAAGGCTTATTTGACGTAGGAGCAAA
AATATTGACGTCAGCACCCCTACTTCAATTTCAATCTTCTTGTTTTGGGC
GCAGAGCGGTCCAGAACGACGGCCTCGTCAAGTCACTGCTGGAAGCCTAC
CTTGCGTTCGAGGCCCTCACTGACCACCCGTACGAATTTTCCAGCATTGT
ACACGGCTTCTTCCCACCGCTCATGTCTTGCGATGGCTGCAACAAGCTGG
CGACGAGTAACATGACATTGGAGAGATTCCTGGCTCAGAGGGACAAACAG
GTCATCGACATGGACCTGTCAGCATGTTGGCTGACTCTGAGCATGTTGTC
GCCTTTAGTTTTCTCAAGCGACTCCAGTTCGTGTACACGACGCCCATGAC
ATTCAGCCGGCACAACCGGAAGTCCAACATCTTCGTATTAGAAGCAAGAG
GGCCTGTCGCGAAGAATGAAGACTTGGATAGCCTGGACTACAAAAGCCTC
AACGCGTGGCTGGCTGACGGGAGCAAAGGCCTGCAAGATGCCTTGGCGGA
CACGGACATGCAAGGACTAAAGGCTCTCTATAAGAAGTTCTCCATGGCAG
GAAAGAGATATGGTAGCATGTGAGTTGGGAAAACACGCGTGTGTCCGAAG
CTCGTACGTTGCTCCAAGCAAGGTAGCTCAAGATTTATGTGGGTGTAGTA
TGTGCAGGTGAGTACTATCCACATGTGTTGCCGGGGGTTGTGGTTGCACG
AAGTATGTAAGAGATACTTTGTTCTTGTACATTCCCATCAAATAGTTTAG
GCGCACGTTGGCCTCGTTGTTTGCGCGCGGTGATGTCCCTGGGTTGTTGT
TTGCCCGCCCTACCCGCCTCAACAGCATGGCCTGGTATCATTTAGGAGCT
CGTCGCTCACCTAACGCGGGAGGCCGTCATGCCGATTGGCCGCAATTTTA
TCCTGCCAAATACTTCCACGACGTACTCACTCGTTGCGTGTGATCCGTTA
GGCTTGAGCCTCTATCTTGATGGCTTCAAAAGCTTGTAAGTCGACACCCC
CCTCCCTCTTTGCCTACTCTGTGCTTCAGTTCAAGCTGTGCGTTCTGGGG
CGCCCTTTGGAGCGGCAGTACACAGCGCGAAGTTTCTGGAGATTTGGTGC
GCTAACGCGAATCCAGTCGAGAGTGCGAACATCGAAGGAAAGGTAAAAGG
ATTCAATACGTGTTTCAACGTCAAGCCGCCTGATGACGTTGCAGGCGCAA
CGACGCGCGTTACTGGCCCTTACTTGGGACCAGATAATCTCCACGACTTC
AACCATGGCCAAACCTGCCGGGAAAAGTACGGGGGGCTATCCTCGTGCCG
AGAATTGTCTGGAGTCAACCTCAACGCCCACGAGCAGAACCACGCCAAGA
AGAAGAAATTCTTGGCCACGGTCAATACTATGGGTTTTGACCGATTCTCG
TTCATGGTGACCCTCATCAACGAGATCGAGAACGAGGTCGTGAACCGACG
ATCTTTGGACGCCCTCGTAGAGAGCGTGACCCTCCACCCAGGCAAACGGT
TGACAATGTGCAAAGCGCTCATTTGGGCGACCGGTCGCTGCTGGTGTGAA
AAGCCTTTGCTCAGATCGTATGATCATTTCGGTCGCGTACGGCTAACTTT
TTTGTAGGCTTGTAGCTTGCAGATGTAGTAGTGTATGCGTCGATGGCGTT
GGGCAACCGTGGTGGACGTGGCTTGAGGATTCGGTAGCTGCCATCCATGC
AATTTTATTGAAGCGTTTTTGTTGCGTTCTGGCTGGTCTCTTCCTGAATT
ACAAACAACACCATGGACACATTGTTCGTTTTTATTCCTGCCATTGATGT
TGCGCACGTACAAACGGTTCCAACGTCACCCATACAACGAAATTCTTCGA
ATTGGGGGGCGTGGTTTCAGGCCTGCGGAAACCATATCGACAGAAAATTT
CGACATGTAGGGTGTGGGACGACATACTGTCTAGAATGAGGGGAATTCAC
TATGTCAACAAGTTGAACCCCTGTGGTTGTGGGGAAGGGGACGGGCGAGC
AGTGAAAAGTGAACCAATACGCGGGACCGACCTCTTACTTGCTAGGTTTC
GTCAACCTTCTACATGTGAGGGTAGCGACGACCAAACACTGTCGACACAA
CGATCAATACATACGCCTGTTTCACCTCGATGTTCGTTCAGTGCGAACGA
AACGGCAGCAGCGCGTGTTTTTTCTCGTCCTGTCCCTGATACATGACTGT
AGAGCGTGCAGAAAACGTTCTTCCGAAGAAAAAACAATGGTGACATGCCC
AAACACCCTCCAAAAGCCCTTCCACC
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Coding sequence (CDS) from alignment at P-lacustris_contig1017:34619..42294-

>mRNA_P-lacustris_contig1017.247.1 ID=mRNA_P-lacustris_contig1017.247.1|Name=mRNA_P-lacustris_contig1017.247.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2418bp|location=Sequence derived from alignment at P-lacustris_contig1017:34619..42294- (Pleurocladia lacustris SAG_25_93)
ATGCCGACGGAGGGAAGCGCGACAGAGTGTTCGTGTCACGGATGCCGACG
GAGGGAAGCGCGACAGAGTGTTCGTGTCACGGCTGCAAGCAGACCATAGC
GAGGAGGTTGAGGGGCTCTGAACGAGCTGCAGATGGCGCCGTCCAACTAA
GTGCCAGCTCGAGAGCGACCGGCCGCCAGGCGCCAGTCACTGCATTCGAG
TTTCCAGTCGGGAAATCTGATGGCGAATCCAAAGTTTTCTCGGTTTCAAC
CACATCTGCCAAGCATCGTGTGATCGTCATCATCAAGGAAAGGAAGCGCG
GCGAAAAAACAGTTCGAGACATCAGCTGTACCGGCAGCACATGCAAACTC
TGCAAGCAGACCATAGCGAGGAGGTTGAGGGGCTCTGAACGAGCTGCAGA
TGGCGCCGTCCAACTAAGTGCCAGCTCGAGAGCGACCGGCCGCCAGGCGC
CAGTCACTGCATTCGAGTTTCCAGTCGGGAAATCTGATGGCGAATCCAAA
GTTTTCTCGGTTTCAACCACATCTGCCAAGCATCGTGTGATCGTCATCAT
CAAGGAAAGGAAGCGCGGCGAAAAAACAGTTCGAGACATCAGCTGTACCG
GCAGCACATGCAAACTTGTCGGTCCGTCATCACGCCAGCATGTTGGTGAC
GAGGATAATGCCGTTGACGGTATTTGCCCGCATGCGAAGGTCGTGCTCGG
AGATAACGAGGAAATCAAGCAAAATATCCCTGCCGCTACGGTTGAAACCT
TGGGCGAGGAAGGGATAGTTGCCCGTGCCAAATCCGTTGCGGAAAGTGGA
TGCCTGGGTCTCAAGGATGTAGCCGAAATTGAGAAGCTGTTCAAGGATGC
TTTTGAAGACGGCGTGCCGCTGCTTGTTCGACTCGGAGACACAGAGACGT
TCGCCGTGCGGGAAAGAGACCATCGTTCCGTGCCGGGTTGCTGGGGGCAC
GTTCAGACAGTCGACATAGCGCTAGCGGCTGGTGCTACACCGGCATCACG
AAGGAGGAGCATCGAGAGACCAAATATTCAATGCAAGTGTCGGTCCGTCA
TCACGCCAGCATGTTGGTGACGAGGATAATGCCGTTGACGGTATTTGCCC
GCATGCGAAGGTCGTGCTCGGAGATAACGAGGAAATCAAGCAAAATATCC
CTGCCGCTACGGTTGAAACCTTGGGCGAGGAAGGGATAGTTGCCCGTGCC
AAATCCGTTGCGGAAAGTGGATGCCTGGGTCTCAAGGATGTAGCCGAAAT
TGAGAAGCTGTTCAAGGATGCTTTTGAAGACGGCGTGCCGCTGCTTGTTC
GACTCGGAGACACAGAGACGTTCGCCGTGCGGGAAAGAGACCATCGTTCC
GTGCCGGGTTGCTGGGGGCACGTTCAGACAGTCGACATAGCGCTAGCGGC
TGGTGCTACACCGGCATCACGAAGGAGGAGCATCGAGAGACCAAATATTC
AATGCAAGGCAAACGGCGGGTATCCATGTGGTATCGCAAGTGGGAAGCCC
AGGGGCTTGAAAACATGCCCGCACACCCTGATAGTTGGGCTGGGTGTGCT
GGGCGAGCACTACCGACATAAGTTGGCGGCACAAGCGGACGTAGAGGGGG
GAGGGGACGGAGAAGATTTTGTCGACTCGGAGATCGGCACAGGGAAAGCC
GAATGGAACAACGAGAAGACCCGGTTGATGTTCGTAGAGAAGATACTGCA
CCTATTGAAGGTCGTCGGGGTGTTGAAGTTTCCCGTAAACCCCTTGCTGC
ACTTATCGAAAGCTGCGAAGGATTCCATGGTGGGTAAGGACGCCGTGATC
CGTTGCCACGAGAACATGTGCTCGAAATGCAACCGACAGTACGTGGTCTT
GAAGAAGCAAGAAGCCATAGCAGTGACCCAGGTGAGCCCCACGTGCCAGA
GTGTAAAGCTTTTCGCCGATATATTGTTTGTGTTTTAAGCAAACGGCGGG
TATCCATGTGGTATCGCAAGTGGGAAGCCCAGGGGCTTGAAAACATGCCC
GCACACCCTGATAGTTGGGCTGGGTGTGCTGGGCGAGCACTACCGACATA
AGTTGGCGGCACAAGCGGACGTAGAGGGGGGAGGGGACGGAGAAGATTTT
GTCGACTCGGAGATCGGCACAGGGAAAGCCGAATGGAACAACGAGAAGAC
CCGGTTGATGTTCGTAGAGAAGATACTGCACCTATTGAAGGTCGTCGGGG
TGTTGAAGTTTCCCGTAAACCCCTTGCTGCACTTATCGAAAGCTGCGAAG
GATTCCATGGTGGGTAAGGACGCCGTGATCCGTTGCCACGAGAACATGTG
CTCGAAATGCAACCGACAGTACGTGGTCTTGAAGAAGCAAGAAGCCATAG
CAGTGACCCAGGTGAGCCCCACGTGCCAGAGTGTAAAGCTTTTCGCCGAT
ATATTGTTTGTGTTTTAA
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