mRNA_P-lacustris_contig1016.245.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1016.245.1
Unique NamemRNA_P-lacustris_contig1016.245.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1016.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1016contigP-lacustris_contig1016:67900..68322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size424
Cds size396
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815286.390613-UTR-P-lacustris_contig1016:67899..679261622815286.390613-UTR-P-lacustris_contig1016:67899..67926Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1016 67900..67926 +
1693493451.6150868-UTR-P-lacustris_contig1016:67899..679261693493451.6150868-UTR-P-lacustris_contig1016:67899..67926Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1016 67900..67926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815286.4023657-CDS-P-lacustris_contig1016:67926..683221622815286.4023657-CDS-P-lacustris_contig1016:67926..68322Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1016 67927..68322 +
1693493451.6233802-CDS-P-lacustris_contig1016:67926..683221693493451.6233802-CDS-P-lacustris_contig1016:67926..68322Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1016 67927..68322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1016.245.1prot_P-lacustris_contig1016.245.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1016 67927..68322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1016.245.1

>prot_P-lacustris_contig1016.245.1 ID=prot_P-lacustris_contig1016.245.1|Name=mRNA_P-lacustris_contig1016.245.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=132bp
MGPPPLPLPLPPLSPASPLPPPPMTQLPVPRSTEKGPDSPYQRRRACNSR
KESLSPAEPVRARAGAKTLLLEAIWGSGSPTRCSPPYPSRRFRTRICWSF
HKSAAETSGGSPAVCPPGQLRSPRRQYLLRNT
back to top

mRNA from alignment at P-lacustris_contig1016:67900..68322+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1016.245.1 ID=mRNA_P-lacustris_contig1016.245.1|Name=mRNA_P-lacustris_contig1016.245.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=423bp|location=Sequence derived from alignment at P-lacustris_contig1016:67900..68322+ (Pleurocladia lacustris SAG_25_93)
CTACACCGTGGTCTCCTCCGCCGCTACATGGGTCCGCCGCCGCTACCGCT
GCCCTTGCCGCCGCTGTCACCGGCGTCACCGCTGCCGCCTCCACCTATGA
CACAGCTGCCCGTCCCGCGGTCTACGGAAAAGGGGCCGGATTCACCATAC
CAAAGACGACGCGCCTGCAACTCGCGGAAGGAATCTCTTTCGCCCGCGGA
GCCGGTGCGCGCGCGAGCAGGAGCGAAGACGCTCCTTCTAGAAGCGATCT
GGGGATCCGGTTCACCGACCAGGTGTTCGCCGCCGTACCCCTCAAGACGA
TTTCGGACGCGAATTTGTTGGAGTTTCCACAAGAGTGCCGCGGAGACATC
TGGAGGTTCGCCAGCCGTTTGTCCGCCAGGGCAGCTCCGGAGTCCCAGGC
GTCAGTATCTCTTGAGGAATACG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1016:67900..68322+

>mRNA_P-lacustris_contig1016.245.1 ID=mRNA_P-lacustris_contig1016.245.1|Name=mRNA_P-lacustris_contig1016.245.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=792bp|location=Sequence derived from alignment at P-lacustris_contig1016:67900..68322+ (Pleurocladia lacustris SAG_25_93)
ATGGGTCCGCCGCCGCTACCGCTGCCCTTGCCGCCGCTGTCACCGGCGTC
ACCGCTGCCGCCTCCACCTATGACACAGCTGCCCGTCCCGCGGTCTACGG
AAAAGGGGCCGGATTCACCATACCAAAGACGACGCGCCTGCAACTCGCGG
AAGGAATCTCTTTCGCCCGCGGAGCCGGTGCGCGCGCGAGCAGGAGCGAA
GACGCTCCTTCTAGAAGCGATCTGGGGATCCGGTTCACCGACCAGGTGTT
CGCCGCCGTACCCCTCAAGACGATTTCGGACGCGAATTTGTTGGAGTTTC
CACAAGAGTGCCGCGGAGACATCTGGAGGTTCGCCAGCCGTTTGTCCGCC
AGGGCAGCTCCGGAGTCCCAGGCGTCAGTATCTCTTGAGGAATACGATGG
GTCCGCCGCCGCTACCGCTGCCCTTGCCGCCGCTGTCACCGGCGTCACCG
CTGCCGCCTCCACCTATGACACAGCTGCCCGTCCCGCGGTCTACGGAAAA
GGGGCCGGATTCACCATACCAAAGACGACGCGCCTGCAACTCGCGGAAGG
AATCTCTTTCGCCCGCGGAGCCGGTGCGCGCGCGAGCAGGAGCGAAGACG
CTCCTTCTAGAAGCGATCTGGGGATCCGGTTCACCGACCAGGTGTTCGCC
GCCGTACCCCTCAAGACGATTTCGGACGCGAATTTGTTGGAGTTTCCACA
AGAGTGCCGCGGAGACATCTGGAGGTTCGCCAGCCGTTTGTCCGCCAGGG
CAGCTCCGGAGTCCCAGGCGTCAGTATCTCTTGAGGAATACG
back to top