mRNA_P-lacustris_contig1014.232.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1014.232.1
Unique NamemRNA_P-lacustris_contig1014.232.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1014.232.1 vs. uniprot
Match: D7G7Z5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z5_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 2.470e-35
Identity = 79/110 (71.82%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 MSLSKLSI-TGGGKAILHGSSRLGNTTTTAILPRQHVRLEQAQQQQAHLAVRVQRINAIIGELQPRTAALKDPQARKELELRLKGIARHGVFVSETWRELDQILAERGRA 327
            MSLS LS+ + GG+AIL GSS+L +      LPR  V+LEQAQQQQAHLA RVQRINA I EL PRTAA+KDP+AR+E+ELRLKG+ARHG+FV+ETWRELD ILAERGRA
Sbjct:    1 MSLSNLSVVSSGGRAILQGSSKLSSR-----LPRPQVQLEQAQQQQAHLAARVQRINATIEELYPRTAAVKDPEARREVELRLKGLARHGLFVTETWRELDAILAERGRA 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1014.232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7Z5_ECTSI2.470e-3571.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1014contigP-lacustris_contig1014:58724..66497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_009560.1
Exons2
Model size4530
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1014.232.1prot_P-lacustris_contig1014.232.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1014 58724..62300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815285.2169707-CDS-P-lacustris_contig1014:58723..589021622815285.2169707-CDS-P-lacustris_contig1014:58723..58902Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 58724..58902 +
1693493450.992172-CDS-P-lacustris_contig1014:58723..589021693493450.992172-CDS-P-lacustris_contig1014:58723..58902Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 58724..58902 +
1622815285.2286055-CDS-P-lacustris_contig1014:62146..623001622815285.2286055-CDS-P-lacustris_contig1014:62146..62300Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 62147..62300 +
1693493451.0043328-CDS-P-lacustris_contig1014:62146..623001693493451.0043328-CDS-P-lacustris_contig1014:62146..62300Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 62147..62300 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815285.2373035-UTR-P-lacustris_contig1014:62300..664971622815285.2373035-UTR-P-lacustris_contig1014:62300..66497Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1014 62301..66497 +
1693493451.0139382-UTR-P-lacustris_contig1014:62300..664971693493451.0139382-UTR-P-lacustris_contig1014:62300..66497Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1014 62301..66497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1014.232.1

>prot_P-lacustris_contig1014.232.1 ID=prot_P-lacustris_contig1014.232.1|Name=mRNA_P-lacustris_contig1014.232.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=111bp
MSLSKLSITGGGKAILHGSSRLGNTTTTAILPRQHVRLEQAQQQQAHLAV
RVQRINAIIGELQPRTAALKDPQARKELELRLKGIARHGVFVSETWRELD
QILAERGRAQ*
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mRNA from alignment at P-lacustris_contig1014:58724..66497+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1014.232.1 ID=mRNA_P-lacustris_contig1014.232.1|Name=mRNA_P-lacustris_contig1014.232.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7774bp|location=Sequence derived from alignment at P-lacustris_contig1014:58724..66497+ (Pleurocladia lacustris SAG_25_93)
ATGTCGTTGAGTAAACTCTCGATCACAGGAGGGGGAAAGGCAATACTTCA
CGGCTCAAGCAGGCTCGGAAATACTACTACTACTGCCATCCTTCCCCGCC
AGCATGTCCGGCTGGAGCAGGCTCAGCAGCAGCAGGCCCATCTGGCCGTC
AGGGTTCAGCGGATCAACGCTATCATCGGGTGAGTACTGCATAGAGGGTG
AGAGAGAGACGCCCAAGACAACCCGCCTACCATTTCACAACACGATGTTA
TCTATTTGCATAGGTGACGCTTATCTATTTGCATAGGTGACGCAAATAGC
TGGAGAGTTATCGATTTATCATGATTGACAGCCTCCTCTCGCCCAAACGC
ACCCCTCGGACTTGCTAAAAGGCCTACGCGCCCTCCATCGGTTGAAGGAA
GCTGCTGTTCAAGAGGGTTAGCCAAATGCGCTCACACTCTTACGCTGCCT
CGATGCTTATGTTGGCCATGAAACATGATATGGGATACTCACCCTCCCCG
AAACAACCATTGACGATTCGTCCGGCGTTGGGCAGCATCGTTTCGTTGGA
TATCGTTGTTGGACCTCGTAGGATTGGTGTTTTCCGCCTTGGCGAAATGT
TGTGCGGGCTTGTGGGCCTGCCCCGGAGCAGAGAGTCCCCTGATCCAAAC
CCCGTTTGAAACTTATCGAAAGTTGTGTTGGGTTCTCACGTTGGTTCATG
AGGACAAGTATTTTTTTTCCGTAAGGTGCCGAGTGCCCTACAAATTGTAC
GACGTATGTCGCCGATTGGAAAGGGGGGGGAGATTGCGGTTCAACCTACA
GAGTGTTCACGCAAACGGCGGACTTTGCTGATGATTACATTGTTTATATA
TGGAGTCACCCTCAAAAATCGCCCGCCGTCCACGATACACAACGTATCAC
GTAATATCGTATACTATCGCACACACAAGGTTGAAAGCTCCGAATCAACC
CGAATCAACCATTCGAATGATGGAACCAGCCAGCCAAGAACGATTGTCAG
TTTCATCTGTGAAATGCCTATGAATACAATGGAATATGAAATATGGTCGT
CCTTCCCGCCAGACCTGCTGCTGTGTGTCACATGTCCAGGTCAGGTGCAG
TATTGAGTGTAGATACCAATACCACCACGTTTTCTTTCGGCTGACCCTCG
GGTTCTTATCCAGGCGTCACAAAATGTGGCTACTATTTGTAAATTGAACC
TCGATTTCTTATCTGCCAGATTCATGTGTGGAGGGTTCTGTGCGAAGTTA
GGATTGACTATTTATACGTAGACTAATAGCTTATACTAAGTAGCTGACCC
CATCGTTCTGTGCCGATGGAAGCGCAGTGGGTCAACTCCCACCCGCCTCG
CTTTTTGTATTTTTTCATCGGCAGGGTGAACGAGGAAAAAAATTCCATTT
CGACCCCCGGGCTCGAGGCTGGACCCGAAATCACGATGGTATTGTTGTGT
TGAACATCGGGCGCCACGGTTATTCCTTGCTATTTCAATTGCGCTCGCTG
AATCCACACACATGATACACACGCTCTCGACCTCTGGGACACACGCAGCC
ACTGACACACATGAGGCGTGATATACAGCGATATATTCTAATCTTTGTAA
TCTGATGTCCTTGTGCAGTTTTTGCCAGTGCCACTCACGTACTACGCGAT
CACTATTCACCTGTCGACGGAGTACGGAATGACGCGGTTGATTTACAACC
CTACCTCGCGCTGCACAGCGGTAGTAGTGGACAGACGATCGTTGGGGAAC
CTTTCTCGCCGTAGGATCGGTGGAATCCACGGCGGAGAAAATATCGTCTG
TGTGCCCCCGATCATGTCGTATGCTAGCTGTTCTACGACAGAAAGAAAGA
GCGCAAGGCCGAGCGACGGCAGGCAGCAGGTGCACTCATACAATCATAGA
AGCGTCCCAGAAAATATGACAAGAAATTATGAAGTCAGTCTTTTCTTAGA
CTTTCCCTTCACCAGAACTAAAGAAGGGACACACACACACACAGGCAAAA
CCTGTGGTGCCCGTACACTGTCACAGTATACCAAACCTCTTAGCCGCTTC
CACACAATCACTTGCACCAAGACCGGAGCGGCAACTTTCCTTCACAGCCG
GATGGCACGCGTCATTACGAAAACTCTACGTCAGTGTCATATGAAGGTTG
CAGTTGAAGACTCCTCGCCCTTCATCAGGGGCACTGGTCGAGGAAAGGGA
CTGTATCGGATGGATCTGCTGATACCGCCAGGCCTACGTGCAGGGGAAAA
GCACGAAGACTTGTCCACGAAGAATGTTCTGATCGATGTAACCATCGTTA
ATCCAGTAGCTGACAGGTGCCTCGACAAATCGTTCCAAGAGTTTGGATCC
GCCCTCGTCGACAGAGAAACCAATGAGGCAAACCACTATGCGGGTACTTT
TGACTCGTCTAGCTTTACACACTTCTTACGGTTGCTCTCTCCACGAATGG
TGGTTTTGGCGAAGGAACGAAATGTTTCATCGAAGCTACCTCCAATCATC
TGGCGGAGGAAGCTTACAACATGGGCAACTACTCTGAAGAGGCGGACTTC
CTTCGTCTCAAGGCGTCTTTGACGAACAAAATTCGGAGACGTTTTTCTTT
TTGTCTTGCTCAATTCCTGTCCATGCGAACCCGTGATTTCTTCCTAGACT
GTGGTTTAGACATGACTGAACTGCCACCTCGACCGATCGGTTGGCAACTA
GGTGGAAATGGAACTGGAGGAAGAGGTGGAGGTACAGAAATTGGTACTGG
AAACGTTTCTTCTAGAGAAGGAGAGGGAAGAAGAAGAGATGAAGCAAGAG
ATAGTGGAGTTGAAGAGAGTAAGAACTTCGATCCTGCAGATCTTCAGCGC
AACCGTCAGCAGCAGCGAGAAAGCAGTACAAGCAGGCCAAACAAAAATCC
CAGAGAAGAGTGCAGCGAAAGTAGTCATAAGGCTAACTCAGCGAAGACAA
GCAGGAGAGAGAGTGTGTCATCTTCGCTTACAAGTTCTTTGAATCCGTTT
CGATTATCCCCGTCTGTTTCCTCTGCACCCCCGCATCAGTGGAGACCGCG
GTTTAGAACATGTTTTGGCGTTTGCTTCTGTCCGCCTAAGACTAACGACT
TCTCATTGGTCAGCCGGTTAGCGCGGTCGATGCTAATTAATGAAACACAC
ACAAACATGACACCCGTCTGCCGGTTCTAAATCCGTTTACTTTCTCTCAC
CGGTCGGCAAGCATGATTCCCACACCCAATCCCACGCCCCAACCCGCACG
AGGATTGTTGTACCCACAAGCGAGATGGTTTTTTATCCGACTACCGAAAC
CACCAGGAATTGAATGCAATTTCGCTCACTGGGTTCCTGCAACTTTTCCA
GACAAAATGCCCGTTATCTCCCTCCGTTCTCTAAAATTCTGCTGTTTTTT
TTTCTTTCTTCCTTTCTCTTCAGTGAACTGCAGCCCCGGACGGCCGCCCT
CAAGGACCCTCAGGCCAGGAAAGAATTGGAACTGAGGCTGAAAGGCATAG
CGCGGCACGGAGTCTTCGTCTCCGAGACTTGGCGAGAACTCGACCAAATT
CTCGCTGAGCGCGGGAGGGCGCAGTAGCTCTTGTAGCACACCCTAGCAAG
GTTTCCGAGGAGACAGACGGCCGACCCCGGCTTTGGACGCTTTGCCGGAG
ACGAGGGAATAGTTGTGGTAACCTGGGCTAGGAACATCCACCGAAGGTGG
CGGGATGAGGGTGATGTGATTGGTTGGTCTACGTGCCATGTATTGTGTTG
TTGTATGGGACGACTGTTGTTTTGTGTATCTTGGATTTTCGATTGAAGAG
GGGAGAGAGAGAGGGAGATGGAACACTCTTTACTTGCACAAAAAAATGAG
GAATACTCTCGCTGAATCTTTGTACAAATGTGGGTAGCTTGTTTTTGATC
CCAGAAACCACTGCATGTAGGACAACGACGGACTGCTGACTGAAGCGCGT
TCGACAGAGACACAACCGGGATTGCATGTTCCGTTGCGTGTCATGTATTG
AGCCATGTAAACATGCATTTCAAAGCCCCGGTATCATACATTTTACACGA
GCCAACGGTGACGTTCAGGGTCAAGTCGAGGAATAGGAGGGTCCATATGA
GAAGTCGAGGTTTCCCAATTGGTTGCTCCAACGGCGGTTGAATCGCCGGC
AGGTATACTATCGCAACAGCACTGGGGTTGGGGGTGGAGGCACGATAAGT
GCGTCAAGTGCCGTCACATTAGTGTCGTGCCTAGGAACAGTCCTAGTGTC
GTGCCTAGGAACAGTCCAACCATCAATCCAATCGGTATCGGTCTTGTTTT
CCTTATGAGTGATTTCGAAAGTCAAAGATCAATGCCAAGCAAGAGGTGCG
TGGGGTGTTGTTTTTTGTTCATGCGAAAAGTCGTCATCCAGCACAATGAC
AGCGATCGCGAGGGAGGTGGGTTCGGAACCTCCTGGGAACGGTTGGCCTA
TGGAGGGCCAATAAACCGCAAAGTCGGACATATGAACAGGGGTGGTGGCG
TAGCCTGGAGGGTGCTGAACAGGGAGAGTTTATAAGAAGGACGTGACAAA
AGTGTTTGCACCCGAAAACAATAGCCGCGCCGAGTTGACCGATCAGAAAC
TGCTCGCCCTCTCTACGCGTGGTAGGCGCGTGTGGAAGTTGGTGTGGGAT
GTAGATTTGCGTGGATACAAGGAGGTTGTGCCATGTGCGATGAATTGAAA
TGTTGTGACGGAACGGAGCACTTGGGTACATGTCTTCAGCGAGAATTGGG
GATGGGACGGAGCACACGCGATCACAGCGAGACTTCCTTATTGTCGAGTG
TCCGTGTCCGCCAAGCAAGGGGGTGGAAACCCGTAGTTACACTTGCAGCG
GTGAAGCAGAACCCGTGGTGTCTTCATTCATGTGTTCTTCCTTGCGCAAG
AGTCGAGAGCAGCACCGCCATAGGAAAGAAAATGGTGACAACTTCAACGG
CCCGAAAGCAAATTCCATCCTATAACTCCTCCTACGTATACCCATGCCTT
TGCCCGTGGCAGAACGCTACACTACGCGACTCTTCGACCACCATGCATAT
TCCCCGCCCCCCCTCCCGGCGGGTCAGGTATTCGTGTAAGCACTCTGTTC
ACGAGTCGACATGCTCACGTCATAGCATTCGTAACTGCAGACAGGGTTGC
TTTCGGCGGGAGAGCAAAAAGAGAGACCACTAGTGGCGACATACAGTTAG
TGATTGGGGGGGGGGGGGTGGTAGCGATAATGGTTTGGTGGCCGTCTGCC
AAACGGCAGAATAAAAACTAGCCTCTGCTGCACCAAGTGCACCAGGGAAA
TTTTGTCTGGTGTCGACAACTACCTGCAACTTTCCTGATGCAGCCACCCT
AGGACGAACTCAATTAGTTCGCTTCATACCCATTTCCCTCCCCGCCCACG
CCTAGTTGCATCACACTTGATCACCATAACATTACACGTCCATCTAACGT
ACGGGGAAAACAGTCATAAGCCACAACATGCGACACACGTGACACACACA
CCTTACGGCTGCAACATGCCTAGGTCTCTGGCCGCTGTTTGTTCACGAAA
CTTTCCGCAGCTTCCGTAAGCTGTCGCAATCGAAAGTGAACTCCGGAAGT
AAGATGACTTTCGCTGTTTCTTCTCTTCCGGCATCAAGATGTTCAAAATC
TAATCGATCGAAAACCAACGATAGATCACGCTTTGAGCACATGCCAACAT
TGGGCACCGCCGCCTATCCTCAATCTATGGTGCTCCCACTTCTGAAACGT
TTTTATCCTCGTCTAATACGTTGCATGATGCAGAATCACTGTTGGCATTT
CAGGCCGGTGTACTCGCGAAAACCTTCACGAGCACCAGCCACAAAAACAT
TTATATTGAACCGTTACGTGGTTTCGTAACCTTGTGCTTTATCAAATGAT
TTATGCATACGAATCGAGCCACAATGCACGATTGATGCCCCTCCACCTTT
TTCAACCATCGCACGCGCACACACGCATACGCATCTCCACTCAACGATCA
CATCTCCCACGGACGTTTGCAGCTCGGTGGGAGGGGCTCCTTCCTCCCTT
ATGTGTCCCATGTTACCATTTTCCATCCCGTATGTCCCATGATACCTTTC
CATCTGTTACAAATACTTCACAGCTGGCTTCGACTAATCGAAAACTCTTC
CGCGGACAGCGGCGCTGACCACACCCGTCCACTAGAAGGGTCGCTAAGGT
CCACTCCGGTAAAGTCATTCCGTTGAGCGAATCTCTGGTAATTGCTACTC
CGCATTCTTCGATCTCCCGGCTTCTTGACTAGCTGTTTCCCGACAATCAT
GCGCCTTCCGACCGTTCCGCCCTACAGTCGCCAGCTCTTTGTTGCCCATC
CCTGTGCTGATGAACGCTTTCTCACTAGCGACTCCAATCGCTGCGCCAGC
GTCTCCTACCTCTTCACGGATCTCCTCTTCTGCTGCTAGCCCACCATTGG
TTACCTTGGCAACGCCACCTGAACCTGAAATCGCCACTGCCTCCCCGCTG
CCCAACTCCCTGCCGGCCGTCCCTTTATCTTGTGAGCAGGGGCCGGGCTC
CTCGTGCGAAGTAGGCGACGCGCGTGTTACAAGACCTCCGTTCTCTTTAC
CGGGCATCCCGCCAACTGGTGTTACTGGCACTGGCAACGCCGTCTGTTTT
TCAGCATTCGCGGACCCTTTATTGCCCACCTGCCCACTGGATGTAGTCGT
CCTACTCTTCCCTACAGTAGGCGGGTTCCCGTTGTGTGCCCCTCCGTTGG
GTCCTCCCGAATACTTGGCCTCCCTCCTACTCGAGTCCTCAGCGACCGCC
TTCGCCCTGTCCCCCTCGGCACTATCTTCCGCCTCCAGGCCCACCCTTCT
CGGGATGCCTGAAAGCTCCCCCATCGAGACAGTTTCGGGCCACACGTGCT
TCGTAGGCAACGACACCCCACTACGAGGAGAGCCATTCTGACCCCAGTGT
CTATTGCCTTCCGACGTCGCTGCCGTTGACGATTTCTCCTCTCCTATTTT
TTTCGACGACCCCGGCCAGCCAAACAAGACAACCCAGCCGCCGAAGATCA
ACGCCATTAAGATTAGTGCCGCGAGCGACGAACCCCACTCCCCGCCGCTC
GCCACCGCCCCTCCCGACGACAACGCATCGTCGGGAGGGTCGCTGCCGTT
GTCCGCGGACGGCACAAGGAAGGCGCACGGCATATCCGCTAAGACGGGTG
GAGGCACGAGGGATTAAGGGACAGGTACGAGGGGAGAGGGTTCGGCGCGA
GGAAACGTTCGTATCAGATAACAGAATGAGGGGGGAAAGAACGTTGCTCG
GAAGCGTAGTAGCTATCGGCGACACAATCATGGCGTAGTTGTTGGGTCAA
TCCTTTCGGTAGAGTTGCCAGGGGGCAACAGGCAGGGCGGCGGAGAACAT
CACCAGGAGACGGGTCAAACCCGTCAGGGCGAGCAAGCAACGTTTCCGCA
AATCAACGCCTCGAGACCACGAGGTGAAGCGCATCGAAGATATTGCGGCC
GGCCGGAGTTTGCATGGAACCGTCGCCGAAACGTTCAAGATGGTGCGTGA
AGGGCGCCCAGTCACAGCTGCAGCGGCCATCAACGGTCGGACAAAACAAG
ACACGATCAACCGCACAAACGCCGCGTCTGAGCCATGAACCTCGGAACCC
CATCGTGCGCGCTATAGACGCCTCGACCGTACTTTTGAAGGGAACGCGCG
GTCGGATGTTCGTACCGGTGAGAAAAAATGGAATGCATGAAACGTCTGGA
ATGTCCTTGGAGAGAAGTAACACC
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Coding sequence (CDS) from alignment at P-lacustris_contig1014:58724..66497+

>mRNA_P-lacustris_contig1014.232.1 ID=mRNA_P-lacustris_contig1014.232.1|Name=mRNA_P-lacustris_contig1014.232.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=666bp|location=Sequence derived from alignment at P-lacustris_contig1014:58724..66497+ (Pleurocladia lacustris SAG_25_93)
ATGTCGTTGAGTAAACTCTCGATCACAGGAGGGGGAAAGGCAATACTTCA
CGGCTCAAGCAGGCTCGGAAATACTACTACTACTGCCATCCTTCCCCGCC
AGCATGTCCGGCTGGAGCAGGCTCAGCAGCAGCAGGCCCATCTGGCCGTC
AGGGTTCAGCGGATCAACGCTATCATCGGATGTCGTTGAGTAAACTCTCG
ATCACAGGAGGGGGAAAGGCAATACTTCACGGCTCAAGCAGGCTCGGAAA
TACTACTACTACTGCCATCCTTCCCCGCCAGCATGTCCGGCTGGAGCAGG
CTCAGCAGCAGCAGGCCCATCTGGCCGTCAGGGTTCAGCGGATCAACGCT
ATCATCGGTGAACTGCAGCCCCGGACGGCCGCCCTCAAGGACCCTCAGGC
CAGGAAAGAATTGGAACTGAGGCTGAAAGGCATAGCGCGGCACGGAGTCT
TCGTCTCCGAGACTTGGCGAGAACTCGACCAAATTCTCGCTGAGCGCGGG
AGGGCGCAGTAGTGAACTGCAGCCCCGGACGGCCGCCCTCAAGGACCCTC
AGGCCAGGAAAGAATTGGAACTGAGGCTGAAAGGCATAGCGCGGCACGGA
GTCTTCGTCTCCGAGACTTGGCGAGAACTCGACCAAATTCTCGCTGAGCG
CGGGAGGGCGCAGTAG
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