mRNA_P-lacustris_contig1014.229.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1014.229.1
Unique NamemRNA_P-lacustris_contig1014.229.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1014.229.1 vs. uniprot
Match: D7G7Z2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z2_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 8.380e-31
Identity = 238/284 (83.80%), Postives = 247/284 (86.97%), Query Frame = 1 
Query:    1 MEGVDKLLNIGGSIDVRDTAQRTLLHRACEEASAATVARXXXXXXXXXXXXXXXXXXXXXXXXXGRLDIVRLLVEKGGADTRARAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGYEKVATLLLDHQADIGARGPKGYRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYADSRRCKERIREAHRREEKAAEAQRQLALQRKRDEAIRRREQELLDRIDLRSRARK 852
            M GVDKLL IGGSIDVRDTAQRTLLHRACEEAS ATV  XXXXXXXXXXXXXXXXXXXXXXXXX RL+IVRLLVEK GAD+RARAK  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   A GPKG+RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    Y DSRRCKERIREA RREE+AAEAQRQLALQ+KRD+  RRREQELLDR+DLR+RAR+
Sbjct:  229 MSGVDKLLEIGGSIDVRDTAQRTLLHRACEEASIATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLEIVRLLVEKAGADSRARAKVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGPKGHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALHYTDSRRCKERIREAQRREERAAEAQRQLALQKKRDDENRRREQELLDRVDLRARARR 512
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1014.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7Z2_ECTSI8.380e-3183.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1014contigP-lacustris_contig1014:42031..44567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue3.1e-28
Seed eggNOG ortholog2880.D7G7Z2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-06_009530.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size855
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1014.229.1prot_P-lacustris_contig1014.229.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1014 42031..44567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815284.0029728-CDS-P-lacustris_contig1014:42030..422671622815284.0029728-CDS-P-lacustris_contig1014:42030..42267Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 42031..42267 -
1693493450.241204-CDS-P-lacustris_contig1014:42030..422671693493450.241204-CDS-P-lacustris_contig1014:42030..42267Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 42031..42267 -
1622815284.0158572-CDS-P-lacustris_contig1014:42682..428661622815284.0158572-CDS-P-lacustris_contig1014:42682..42866Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 42683..42866 -
1693493450.2610698-CDS-P-lacustris_contig1014:42682..428661693493450.2610698-CDS-P-lacustris_contig1014:42682..42866Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 42683..42866 -
1622815284.193857-CDS-P-lacustris_contig1014:43305..435271622815284.193857-CDS-P-lacustris_contig1014:43305..43527Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 43306..43527 -
1693493450.2692697-CDS-P-lacustris_contig1014:43305..435271693493450.2692697-CDS-P-lacustris_contig1014:43305..43527Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 43306..43527 -
1622815284.2135804-CDS-P-lacustris_contig1014:43980..440991622815284.2135804-CDS-P-lacustris_contig1014:43980..44099Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 43981..44099 -
1693493450.2772667-CDS-P-lacustris_contig1014:43980..440991693493450.2772667-CDS-P-lacustris_contig1014:43980..44099Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 43981..44099 -
1622815284.223224-CDS-P-lacustris_contig1014:44474..445671622815284.223224-CDS-P-lacustris_contig1014:44474..44567Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 44475..44567 -
1693493450.2852068-CDS-P-lacustris_contig1014:44474..445671693493450.2852068-CDS-P-lacustris_contig1014:44474..44567Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 44475..44567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1014.229.1

>prot_P-lacustris_contig1014.229.1 ID=prot_P-lacustris_contig1014.229.1|Name=mRNA_P-lacustris_contig1014.229.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=285bp
MEGVDKLLNIGGSIDVRDTAQRTLLHRACEEASAATVARLLELGATVNAT
EKRKQTPLHRACERGRLDIVRLLVEKGGADTRARAKLQHEPLHVACLGNC
GEVVKFLLREGNVDVEAADKNGMRCLHLAVRRNRLEAIRELLKHGCDVEA
PLSDGLTRPLHMACSSGYEKVATLLLDHQADIGARGPKGYRPLHLAAKEA
RAAIVELLIGRHADLHDKDDRGRDALHYADSRRCKERIREAHRREEKAAE
AQRQLALQRKRDEAIRRREQELLDRIDLRSRARK*
back to top

mRNA from alignment at P-lacustris_contig1014:42031..44567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1014.229.1 ID=mRNA_P-lacustris_contig1014.229.1|Name=mRNA_P-lacustris_contig1014.229.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2537bp|location=Sequence derived from alignment at P-lacustris_contig1014:42031..44567- (Pleurocladia lacustris SAG_25_93)
ATGGAAGGAGTTGACAAGCTGCTTAACATCGGCGGGTCGATTGATGTCAG
GGACACCGCGCAGCGCACTCTCTTGCATCGAGCCTGTGAAGAGGTGAGCA
CCCTTAGAATACTATATATAGGCGGTTTAGAACCATGTCTCCGCGTTATT
TAGTGGTTTTGACTCGTGGTGGGGGAGGCGGTGGCCGGCATTTGGAGCGG
GGGTTTCAGGTACGATTCCCGCCTCTCAGAGATAAGCCTGCGAAAGCACC
GTTTGAACGATAGAAGGAAACGCAATCCTCGCGTTCAGGTTCGCTATTTT
TGCCTGGGCGTGCCATCAGAATGAGTGAGTAACCCTCGGGCACGAAATAG
TGGCGGTTCGTTCACATTGAGCACTTCTTACGCGCCCACCAATCTGCACC
CCTCTGATAAAATTTTGATCGGAGAAGGCACAGATGTTTTTGAACATTCG
CTTTAGCTCGTGTGATAGGCGAGCGCCGCCACTGTGGCGAGGCTGTTGGA
GCTTGGAGCAACCGTAAACGCGACTGAAAAGCGAAAGCAGACGCCGCTGC
ATCGTGCTTGCGAGCGCGGCCGCTTGGACATTGTCAGGTATTTTTCGCAA
GCATGTTTGTCCTGTTGTTTGCTCCAGATGTTACACAGTCCCAGTACAGA
AATTGGTGTACATCACGATACTCTCCATTATGCGCGTGCGTGACACACGC
ACGTGTGGCTTGCTCAGTCGACTACTCCGCCTGTTGACGCGATCAGAAGC
CATCAAGTCAAGGAAAACGGATGTTGCGAGTGCCTAACCCCGGCTCCCGC
ACTGACAGGGGAGGAAGTTACTCGCGCCATACGTAAGGAATCAGGCAGAT
GTCGCAATGCTTATATCAGAGTGACGTGGTGCGTAACGCACTCCGGATGT
CTAAATCGATAGAAAAAGTGACATTGCCCGGTCGAGTTTTGACCATCATC
CCAAGCGACCCCTCCTCCTTTTGTTGCAAGTGGCCGCGGAAGGCCTCAAT
CACAACCTCGCCGACGACCCTCGCCACTTCACTCCGTTAGGCTTCTGGTC
GAGAAGGGTGGAGCGGACACACGCGCTCGAGCGAAACTGCAGCATGAGCC
TCTGCATGTGGCATGCCTCGGGAACTGCGGGGAGGTGGTGAAGTTCTTGC
TGAGAGAAGGAAATGTGGACGTGGAGGCCGCCGACAAAAACGGCATGAGG
TGCCTGCACCTGGCCGTCCGACGGAACAGGCTGGAGGCCATTCGGGAGTT
GCTCAAACATGGGTAGGGGGTCTCTCGCGGCTACGTTGTTGACACGGGAT
GGACCAACGCGCTGATTGAAAGCGAAGAAGGGGAAATGTCGCTAGCCTAC
CAGGAGGGGAGGAGACGCAGATGAACGTTTTTATTCTGTTCGGTTCAGCG
TAATGTTAACGTTCGGAGTGCTCAATGTTTATTTCGTGCAAGTTGTTTGG
TGGTCGACTGCGGTCCTTTCGTAAACGCGGCAAAACTTCGCTGTTTCCAT
GAATCGTCTTGAAACATTCTCCTTGACATTCATCGTCGGAAGTCGAAGGG
ACGGCATCTGGTGTGTACGGCTGTGGGCGTCGGTTGTTGGCGTCGCCTTG
ATCCGCCGTAGACGGCAATCATACGCTGCGAAATGTTGTCTCCGGCGGCG
TGCATCGATCGCTTCAAAACCGTGACAGAACATAACTGTGTGGAACCATA
GGTGTGACGTCGAAGCCCCGCTATCGGATGGGCTTACGCGACCACTGCAC
ATGGCGTGCTCGAGCGGGTACGAGAAAGTCGCGACGCTCTTGCTTGACCA
CCAGGCCGATATCGGCGCACGAGGCCCTAAGGGGTATCGTCCTTTACACC
TTGCCGCCAAGGAAGCGAGGGCTGCGATTGTTGAGGTGAGAAACACTTGC
ACGGCCTGCCATTCCCCACTACTGCATCTCGTGCAAGTACGCGAGTCGTC
TCACTTCCCCTCGACCGGCTTTGAAAGCTCCATTGCTCCACAACGAAAAG
GTGTCGTTGAGGAAACCGACCGAAACGTCCAACAAAAGCTGTCTACGAAA
TATTTCCAAAACCCTGAGTTCTCGGAGCTATCGAGCAACCGAGCTTGAAA
GTCGATCTACAGAGTAGCAGGGGGTATGCGACTACTTAGAGTTACTACGA
CAAGGAAACCGGCAGGTCGGTTTGCTACCCAAAAGCGTCTTGAGATTTCT
TTGCGTACATGGCCAGACAACACCAAGAGCTTAGAAATCCCGCTCAAGTC
ATTACCGCCGTGCCTCACTCGATATACATGTACCTCCTTTCCCCCCACAG
CTGTTGATAGGGCGACACGCGGATTTGCACGACAAAGACGATAGAGGGCG
AGACGCTCTGCACTACGCTGATAGTCGAAGGTGTAAGGAACGGATTCGAG
AGGCACACCGGAGAGAAGAGAAGGCTGCCGAGGCGCAGAGGCAGCTGGCG
CTCCAACGAAAGAGGGACGAAGCAATCCGGCGTCGGGAGCAGGAGCTGCT
AGATAGGATCGACCTCCGGTCGAGAGCCCGAAAATAA
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1014:42031..44567-

>mRNA_P-lacustris_contig1014.229.1 ID=mRNA_P-lacustris_contig1014.229.1|Name=mRNA_P-lacustris_contig1014.229.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1710bp|location=Sequence derived from alignment at P-lacustris_contig1014:42031..44567- (Pleurocladia lacustris SAG_25_93)
ATGGAAGGAGTTGACAAGCTGCTTAACATCGGCGGGTCGATTGATGTCAG
GGACACCGCGCAGCGCACTCTCTTGCATCGAGCCTGTGAAGAGATGGAAG
GAGTTGACAAGCTGCTTAACATCGGCGGGTCGATTGATGTCAGGGACACC
GCGCAGCGCACTCTCTTGCATCGAGCCTGTGAAGAGGCGAGCGCCGCCAC
TGTGGCGAGGCTGTTGGAGCTTGGAGCAACCGTAAACGCGACTGAAAAGC
GAAAGCAGACGCCGCTGCATCGTGCTTGCGAGCGCGGCCGCTTGGACATT
GTCAGGCGAGCGCCGCCACTGTGGCGAGGCTGTTGGAGCTTGGAGCAACC
GTAAACGCGACTGAAAAGCGAAAGCAGACGCCGCTGCATCGTGCTTGCGA
GCGCGGCCGCTTGGACATTGTCAGGCTTCTGGTCGAGAAGGGTGGAGCGG
ACACACGCGCTCGAGCGAAACTGCAGCATGAGCCTCTGCATGTGGCATGC
CTCGGGAACTGCGGGGAGGTGGTGAAGTTCTTGCTGAGAGAAGGAAATGT
GGACGTGGAGGCCGCCGACAAAAACGGCATGAGGTGCCTGCACCTGGCCG
TCCGACGGAACAGGCTGGAGGCCATTCGGGAGTTGCTCAAACATGGGCTT
CTGGTCGAGAAGGGTGGAGCGGACACACGCGCTCGAGCGAAACTGCAGCA
TGAGCCTCTGCATGTGGCATGCCTCGGGAACTGCGGGGAGGTGGTGAAGT
TCTTGCTGAGAGAAGGAAATGTGGACGTGGAGGCCGCCGACAAAAACGGC
ATGAGGTGCCTGCACCTGGCCGTCCGACGGAACAGGCTGGAGGCCATTCG
GGAGTTGCTCAAACATGGGTGTGACGTCGAAGCCCCGCTATCGGATGGGC
TTACGCGACCACTGCACATGGCGTGCTCGAGCGGGTACGAGAAAGTCGCG
ACGCTCTTGCTTGACCACCAGGCCGATATCGGCGCACGAGGCCCTAAGGG
GTATCGTCCTTTACACCTTGCCGCCAAGGAAGCGAGGGCTGCGATTGTTG
AGGTGTGACGTCGAAGCCCCGCTATCGGATGGGCTTACGCGACCACTGCA
CATGGCGTGCTCGAGCGGGTACGAGAAAGTCGCGACGCTCTTGCTTGACC
ACCAGGCCGATATCGGCGCACGAGGCCCTAAGGGGTATCGTCCTTTACAC
CTTGCCGCCAAGGAAGCGAGGGCTGCGATTGTTGAGCTGTTGATAGGGCG
ACACGCGGATTTGCACGACAAAGACGATAGAGGGCGAGACGCTCTGCACT
ACGCTGATAGTCGAAGGTGTAAGGAACGGATTCGAGAGGCACACCGGAGA
GAAGAGAAGGCTGCCGAGGCGCAGAGGCAGCTGGCGCTCCAACGAAAGAG
GGACGAAGCAATCCGGCGTCGGGAGCAGGAGCTGCTAGATAGGATCGACC
TCCGGTCGAGAGCCCGAAAATAACTGTTGATAGGGCGACACGCGGATTTG
CACGACAAAGACGATAGAGGGCGAGACGCTCTGCACTACGCTGATAGTCG
AAGGTGTAAGGAACGGATTCGAGAGGCACACCGGAGAGAAGAGAAGGCTG
CCGAGGCGCAGAGGCAGCTGGCGCTCCAACGAAAGAGGGACGAAGCAATC
CGGCGTCGGGAGCAGGAGCTGCTAGATAGGATCGACCTCCGGTCGAGAGC
CCGAAAATAA
back to top