mRNA_P-lacustris_contig101.185.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig101.185.1
Unique NamemRNA_P-lacustris_contig101.185.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig101.185.1 vs. uniprot
Match: A0A6H5KNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU8_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.230e-21
Identity = 63/117 (53.85%), Postives = 73/117 (62.39%), Query Frame = 1 
Query:    7 HPLCSRDPRRIDALVSEVSEARSAEAALRKEAXXXXXXXXXXXXXXXXXXXEKADMTEVHLVQMEKLRRDLEMQAQDGKRRLESELESG-----DKLLLTLKEGKERLERETERLRE 342
            HPLCS +P +ID LVSE  EA+ AE ALR EA                   +KAD+TE HL QME+LRRDL+  A+DGKRRLESELE G     D+L LTLK   E L  ET+RLRE
Sbjct:   90 HPLCSGEPGKIDGLVSEAREAKEAEGALRAEAAILRERKAVLDADIRRLERDKADLTEEHLAQMERLRRDLQEDARDGKRRLESELEKGHAKSMDRLRLTLKAEAESLAGETKRLRE 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig101.185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNU8_9PHAE1.230e-2153.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig101contigP-lacustris_contig101:58925..59267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.9912012-CDS-P-lacustris_contig101:58924..592661622815276.9912012-CDS-P-lacustris_contig101:58924..59266Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 58925..59266 +
1693493445.227935-CDS-P-lacustris_contig101:58924..592661693493445.227935-CDS-P-lacustris_contig101:58924..59266Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 58925..59266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig101.185.1prot_P-lacustris_contig101.185.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig101 58925..59266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig101.185.1

>prot_P-lacustris_contig101.185.1 ID=prot_P-lacustris_contig101.185.1|Name=mRNA_P-lacustris_contig101.185.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=114bp
KQHPLCSRDPRRIDALVSEVSEARSAEAALRKEADQLRGRKAILDKDIQQ
LQREKADMTEVHLVQMEKLRRDLEMQAQDGKRRLESELESGDKLLLTLKE
GKERLERETERLRE
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mRNA from alignment at P-lacustris_contig101:58925..59267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig101.185.1 ID=mRNA_P-lacustris_contig101.185.1|Name=mRNA_P-lacustris_contig101.185.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=343bp|location=Sequence derived from alignment at P-lacustris_contig101:58925..59267+ (Pleurocladia lacustris SAG_25_93)
AAGCAGCATCCGCTGTGCTCCCGTGATCCACGTCGGATAGACGCCCTCGT
GTCAGAAGTGTCTGAAGCACGATCGGCGGAAGCCGCCCTGCGCAAGGAGG
CAGACCAGCTGCGTGGGAGGAAGGCTATCCTCGACAAGGATATCCAGCAG
CTCCAGAGAGAGAAGGCGGACATGACGGAGGTGCACTTGGTGCAGATGGA
GAAGCTCCGGCGGGATCTCGAGATGCAAGCACAGGATGGCAAGCGCCGCC
TTGAATCAGAGCTGGAGTCCGGGGACAAGTTGTTGTTGACCTTGAAGGAA
GGGAAGGAGCGCCTCGAGAGAGAGACAGAACGGCTGCGCGAGG
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Coding sequence (CDS) from alignment at P-lacustris_contig101:58925..59267+

>mRNA_P-lacustris_contig101.185.1 ID=mRNA_P-lacustris_contig101.185.1|Name=mRNA_P-lacustris_contig101.185.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=684bp|location=Sequence derived from alignment at P-lacustris_contig101:58925..59267+ (Pleurocladia lacustris SAG_25_93)
AAGCAGCATCCGCTGTGCTCCCGTGATCCACGTCGGATAGACGCCCTCGT
GTCAGAAGTGTCTGAAGCACGATCGGCGGAAGCCGCCCTGCGCAAGGAGG
CAGACCAGCTGCGTGGGAGGAAGGCTATCCTCGACAAGGATATCCAGCAG
CTCCAGAGAGAGAAGGCGGACATGACGGAGGTGCACTTGGTGCAGATGGA
GAAGCTCCGGCGGGATCTCGAGATGCAAGCACAGGATGGCAAGCGCCGCC
TTGAATCAGAGCTGGAGTCCGGGGACAAGTTGTTGTTGACCTTGAAGGAA
GGGAAGGAGCGCCTCGAGAGAGAGACAGAACGGCTGCGCGAGAAGCAGCA
TCCGCTGTGCTCCCGTGATCCACGTCGGATAGACGCCCTCGTGTCAGAAG
TGTCTGAAGCACGATCGGCGGAAGCCGCCCTGCGCAAGGAGGCAGACCAG
CTGCGTGGGAGGAAGGCTATCCTCGACAAGGATATCCAGCAGCTCCAGAG
AGAGAAGGCGGACATGACGGAGGTGCACTTGGTGCAGATGGAGAAGCTCC
GGCGGGATCTCGAGATGCAAGCACAGGATGGCAAGCGCCGCCTTGAATCA
GAGCTGGAGTCCGGGGACAAGTTGTTGTTGACCTTGAAGGAAGGGAAGGA
GCGCCTCGAGAGAGAGACAGAACGGCTGCGCGAG
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