mRNA_P-lacustris_contig1009.171.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1009.171.1
Unique NamemRNA_P-lacustris_contig1009.171.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: D7FV40_ECTSI (Valine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV40_ECTSI)

HSP 1 Score: 329 bits (844), Expect = 3.400e-96
Identity = 178/245 (72.65%), Postives = 197/245 (80.41%), Query Frame = 1
Query: 1210 YIEASKTRIGTFAATGEGDEAETRA-------------------------------QLPRRGDALMVAPWPKVDDVPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGPPEGQAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANLDL 1851
            YIEASKTRIG+FAA G+G+E E RA                               QLPR G+ALMVAPWPKVDD PLA+DE AI RFEA+Q+LVRSVRNAKAEY+V PGKKIPAVVQVS+KALRSD+++EVA LCLLGRLD +GLEV+GLDGPPEGQ V LVVQDGLEVYLPMAGLVDK+KERARLEKQAGKL KD+EVLEKRL GSNF EKAPAKVVEE +ANLQAQ+DQLKTVQQAI +LDL
Sbjct:  792 YIEASKTRIGSFAAGGDGEEGEARARSSRRTLVYVFDTCLRLLHPFMPFITEALWQQLPRTGEALMVAPWPKVDDAPLAVDELAIGRFEAVQSLVRSVRNAKAEYKVEPGKKIPAVVQVSNKALRSDVIKEVAALCLLGRLDPEGLEVQGLDGPPEGQNVHLVVQDGLEVYLPMAGLVDKDKERARLEKQAGKLTKDMEVLEKRLSGSNFVEKAPAKVVEEVRANLQAQKDQLKTVQQAIVDLDL 1036          
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A836CET5_9STRA (Valine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET5_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.780e-48
Identity = 119/240 (49.58%), Postives = 148/240 (61.67%), Query Frame = 1
Query: 1210 YIEASKTRIGTFAATGEGDEAE---------------------TRA---QLPRRGDALMVAPWPKVDDVPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGPP----EGQAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANL 1845
            YIEASK R+G   ++ E   A                      T A   QLP  GDAL+VAPWP++ D PL +D +A +RFEA QALVRS+RNA+AEY+V P +KI A VQVSD ALR+D+  E A L LL RLD   L V  +DG P     G+AV  VVQDGLE YLP+AG+VD  KE+ARL KQA K+ KDI  L  RL  S FA+KAP  VVE  +A L   +D+L TV  ++ ++
Sbjct:  757 YIEASKVRMGD-RSSAEAQTARRVLVYVFDTCLRLLHPFMPFVTEALWQQLPHAGDALIVAPWPQMGDAPLPVDAAATARFEAFQALVRSIRNARAEYKVEPARKISANVQVSDAALRADLTAEAAALALLARLDPAALSVSAMDGAPGDAASGRAVHCVVQDGLEAYLPLAGMVDMAKEKARLAKQAEKIQKDIAALSGRLNSSGFADKAPPAVVEATRAQLVEMQDKLATVLASMESM 995          
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A4D9D6S5_9STRA (Valine--tRNA ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6S5_9STRA)

HSP 1 Score: 162 bits (410), Expect = 3.010e-41
Identity = 105/247 (42.51%), Postives = 143/247 (57.89%), Query Frame = 1
Query: 1210 YIEASKTRIGTFAATGEGDEAETRA---------------------------QLPRRGDALMVAPWPKVD-DVPLAMDESAISRFEAIQALVRSVRNAKAEYQV----------PPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGPPEG----QAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTV 1824
            YIEASKTR+   ++TG    A T                             QLP  G+AL+VAPWP+ + +  L +D  AI +F   QALVR++RNA+AEY+V           PGKK+ A +QV+D A R ++ +E   L LLGR+D + L + G++   E     QAVRL+V+DGLE YLP+A +VD +KER RL KQA KL  +I  LEKRL G+ F  KAP  +VE  K +L  +++QL+TV
Sbjct:   44 YIEASKTRMAP-SSTGTSPSASTTRRVLVYVFDTCLRLLHPFMPYITEVLWQQLPHDGEALIVAPWPQEEGEEKLHVDREAIDQFRRFQALVRAIRNARAEYKVRREAGREGGVEPGKKVAAQIQVADPAFREELEREREVLSLLGRVDGEKLSLTGIEAREESSEGPQAVRLIVEDGLECYLPLADMVDAKKERERLSKQAVKLEGEIAGLEKRLSGTAFLAKAPPALVESTKQSLSEKKEQLQTV 289          
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A7S3XNU9_HETAK (Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNU9_HETAK)

HSP 1 Score: 166 bits (419), Expect = 6.130e-39
Identity = 130/333 (39.04%), Postives = 168/333 (50.45%), Query Frame = 1
Query:  955 LTQLLAEARAATGEKGTPAQRVPASRPAPEKSLLQLPTREEPIVSPDRRDHGDAVVLLDEPTHTPATRPA*NIGSLPS----FHAREFR--YIEASKTRIGTFAATGEGDEAETRA--------------------------QLPRRGDALMVAPWPK-VDDVPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDG--PPEGQAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANLD 1848
            L  L AE RAA   +G          P   + L  LP  E+ IVS       D    LD          A N+G   S    F   E+   YIE+SKTR+ T  A      A  R                           +LPR GDALMVAPWPK   +  L +   A+ R+ A+QALVR+VRNA+AEY V  G+K+ A VQV+D  LR+++  E A L LLGRLDA+ L V  L G  P E +AVRLVVQDG+E YLP+AG+VD  KE+ RLEKQ              L  S FA+KAP +V+E  +     +R+Q+ T+Q +I  ++
Sbjct:  679 LKDLPAEERAALAVRG----------PMSAEELAALPLPEQHIVSLCHELANDVTASLD----------AYNLGDAGSKIYQFLWDEYADWYIESSKTRMRTDQA------AMARRVLVYVFDTCLRLLHPFMPYVTEVLWQELPRAGDALMVAPWPKPAGEAALPVAAGAVRRYRALQALVRAVRNARAEYNVDQGRKVEAAVQVADPVLRAELTAEAAALALLGRLDAEKLSVGELTGASPYEEKAVRLVVQDGVEAYLPLAGMVDFAKEKKRLEKQLXXXXXXXXXXXXXLNSSGFADKAPPEVLEATRQQAAEKREQVATIQASIKEIE 985          
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: K0SAX9_THAOC (Valine--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SAX9_THAOC)

HSP 1 Score: 156 bits (395), Expect = 7.410e-36
Identity = 106/254 (41.73%), Postives = 141/254 (55.51%), Query Frame = 1
Query: 1210 YIEASKTRIGTFAATGEGDEAETRAQ----------------------------LPRRG---------DALMVAPWPKVDDVPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEV--RGLD---GPPEGQAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANL 1845
            YIE SKTR+  +   G G E    AQ                            LPR+          ++LM+A WP++DD PLA D  A++ FE  QAL RS+RNA+AEY V  GKKI A V V+   L+  I  E+ +L +L +LD D + V   G D      EG AV+LVVQDG+E YLP++G+VD EKER RLE+Q+ KL+K+IE L  RL    FA+KAP  +V++A+  L    DQ   VQ ++A L
Sbjct:  919 YIEISKTRL--YEGFGGGGEDAKTAQRVLVYILDTSMRLLHPYMPYVTEQLWHHLPRQSRLDGGVAGVNSLMLADWPQMDDAPLATDAEAVATFEVFQALTRSIRNARAEYNVEQGKKISATV-VASGHLKDAIESELKSLVMLAKLDPDQVAVVEAGSDEANSASEGDAVQLVVQDGVEAYLPLSGMVDAEKERQRLERQSAKLSKEIEKLAGRLNSPGFADKAPPAIVDKARVELAELEDQASKVQASLAAL 1169          
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A7S3C4N3_9VIRI (Valine--tRNA ligase n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C4N3_9VIRI)

HSP 1 Score: 150 bits (379), Expect = 3.430e-35
Identity = 103/240 (42.92%), Postives = 134/240 (55.83%), Query Frame = 1
Query: 1210 YIEASKTRIGTFAATGEGDEAETRA--------------------------QLPRRGDALMVAPWPKVDDVPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGPPE--GQAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANL 1845
            Y+E +KTR  T+   G  D A TR                            LP  G ++M APWP   + P  +D    +RFE +QA+VRS+RNA+AEYQV PGK+IPA V  +D    +D+  E A LC L +LD +G E+   + P +    AVRLVV+DG+ V LPM+GLVD EKE  RL KQA KL K +  LE RL  S+F  KAPAKVV+ AKA  +  R Q + +   +A L
Sbjct:  266 YVELAKTR--TYGHEGAPDAAVTRRVLAYCYERFVRMLHPVMPYATEQLWQALPHTGVSVMTAPWP---EPPAEVDAEVDARFEVLQAVVRSMRNARAEYQVAPGKRIPATVVATDAGALADLQAERAALCFLAKLD-EGFELAA-EAPTDVADDAVRLVVRDGVSVVLPMSGLVDVEKETERLTKQAAKLDKSLGQLEARL-SSDFVNKAPAKVVDAAKAEAEEFRAQREQITARLAEL 497          
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A8J5X336_DIALT (Valine--tRNA ligase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X336_DIALT)

HSP 1 Score: 154 bits (388), Expect = 4.800e-35
Identity = 108/254 (42.52%), Postives = 138/254 (54.33%), Query Frame = 1
Query: 1210 YIEASKTRIGTFAAT----GEGDEAETRA-----------------------------------QLPRRGDALMVAPWPKVDDVP-LAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGPPEG--QAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANL 1845
            YIEASKTR    AA+    GEG EA                                       ++P  G +LM+APWP     P L +D  A+  F   Q  VR+VRNA+AEY+V PGKKI AVV VSD +  +++  E A   LL R+D + L        P G  +AV LVV DG+EV+LP+A LVD +KE ARLEKQA KL   I+ L  RL    FA+KAPA VV  A A L  QR+QL+T++++IA+L
Sbjct:  768 YIEASKTRFQGEAASRASGGEGAEATAETARAAAEARRTLVYVLDCGLRLLHPFMPYVTEAIWQRMPHDGPSLMLAPWPLGRGAPPLPVDAGALDAFGVFQDTVRAVRNARAEYKVEPGKKIHAVVCVSDPSKLAELRSEAAAFALLARVDPERLVWSSAMCAPAGAGKAVHLVVADGVEVFLPLANLVDADKETARLEKQAAKLQASIDKLAARLGSPGFADKAPADVVALATAELAEQREQLETIRKSIADL 1021          
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A7S4VM19_9STRA (Valine--tRNA ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VM19_9STRA)

HSP 1 Score: 144 bits (364), Expect = 7.230e-35
Identity = 101/254 (39.76%), Postives = 138/254 (54.33%), Query Frame = 1
Query: 1210 YIEASKTRIGTFAATGEGDEAETRA-----------------------------QLPRRG-------DALMVAPWPKVDD-VPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEV--RGLDGPPEGQAV---RLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANL 1845
            YIE SKTR+  +   G G E E +A                              +PR          ALM+A WP++DD VPL   E A+S FE+ QAL RS+RNA+AEY V PGK+I A + V+  +L+ +I  EV +L  L +LD + + V   G D      AV   +LVVQDG+E YLP++GL+D  KER RLEKQ+ K+ K+I+ L  RL    F +KAPA VV++AK  L    DQ   ++ ++  L
Sbjct:   53 YIEISKTRL--YEGAGGGGEEEAKAARRVLVYILDTSLRLLHPYMPYVTEQLWHHIPRPSATEDQVAHALMLADWPQMDDEVPLTTSEEAVSSFESFQALTRSIRNARAEYNVEPGKRISATI-VAKGSLKDEISAEVKSLVALAKLDPEQVIVVEAGSDEAKAAAAVESVQLVVQDGVEAYLPLSGLIDPVKERKRLEKQSEKIEKEIQKLAGRLQSKGFVDKAPAAVVDKAKNELAELEDQAAKIKSSLEAL 303          
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A7S2EXA7_TRICV (Valine--tRNA ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXA7_TRICV)

HSP 1 Score: 142 bits (359), Expect = 7.270e-35
Identity = 89/198 (44.95%), Postives = 121/198 (61.11%), Query Frame = 1
Query: 1279 RAQLPRRGDA--LMVAPWPKVDDV-PLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGPPEGQA-----VRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANLD 1848
            RA+    G A  +M+A WP++DD  PL     A+S FE+ QAL RS+RNA+AEY V PGKKI A + V+   ++  I  E+ +L LL +LD + + V         +A     V+LVVQDG+E YLP++GL+D EKER RLEKQA K+ K IE L  RL    FA+KAP  VVE+A+A L    DQ   ++  +  L+
Sbjct:   47 RAEPDSEGAAHSIMLASWPQMDDESPLVTSPEAVSSFESFQALTRSIRNARAEYNVEPGKKISATI-VAKGPIKDQIESELKSLVLLAKLDPESVAVYEAGSSEAAEATSVESVQLVVQDGVEAYLPLSGLIDPEKERKRLEKQAEKVGKAIEKLRGRLESKGFADKAPPAVVEKARAELAELEDQEAKIKSGLEALN 243          
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A7S3F538_9EUKA (Valine--tRNA ligase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F538_9EUKA)

HSP 1 Score: 145 bits (366), Expect = 8.190e-35
Identity = 87/192 (45.31%), Postives = 113/192 (58.85%), Query Frame = 1
Query: 1273 ETRAQLPRRGDALMVAPWPKVDDVPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGP-PEGQAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANL 1845
            E   +LP  G +LM+A WP+ DD PL +D  A  RF ++QALVRSVRNA+AEY+V PGK I A V   +  L   +  E   +  L R+D      +G D    +G  VRLVV+D LE  LP+AGLVD +KER RL KQ  KL   I  + KRL    F +KAP  V+E+A+  L  Q +QL+ V  A+  L
Sbjct:  146 EVWQRLPHEGPSLMIADWPQRDDEPLCVDADAEQRFGSLQALVRSVRNARAEYRVEPGKLIAATVIAGE--LEPTLAAETEAITSLARIDPAAFSFQGADAEGADGAVVRLVVEDSLEAVLPLAGLVDSDKERVRLGKQQTKLEASIAKVSKRLEAPGFVDKAPPAVLEKARTELAEQEEQLQGVLDALKQL 335          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV40_ECTSI3.400e-9672.65Valine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A836CET5_9STRA1.780e-4849.58Valine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
A0A4D9D6S5_9STRA3.010e-4142.51Valine--tRNA ligase n=1 Tax=Nannochloropsis salina... [more]
A0A7S3XNU9_HETAK6.130e-3939.04Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo T... [more]
K0SAX9_THAOC7.410e-3641.73Valine--tRNA ligase n=1 Tax=Thalassiosira oceanica... [more]
A0A7S3C4N3_9VIRI3.430e-3542.92Valine--tRNA ligase n=1 Tax=Prasinoderma singulare... [more]
A0A8J5X336_DIALT4.800e-3542.52Valine--tRNA ligase n=1 Tax=Diacronema lutheri Tax... [more]
A0A7S4VM19_9STRA7.230e-3539.76Valine--tRNA ligase n=1 Tax=Ditylum brightwellii T... [more]
A0A7S2EXA7_TRICV7.270e-3544.95Valine--tRNA ligase n=1 Tax=Trieres chinensis TaxI... [more]
A0A7S3F538_9EUKA8.190e-3545.31Valine--tRNA ligase n=1 Tax=Haptolina ericina TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1009contigP-lacustris_contig1009:23795..29061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.8
Seed ortholog evalue1.4e-77
Seed eggNOG ortholog2880.D7FV40
KEGG rclassRC00055,RC00523
KEGG koko:K01873
KEGG ReactionR03665
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.valyl-tRNA aminoacylation
EggNOG OGsCOG0525@1,KOG0432@2759
EC6.1.1.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons6
Model size2123
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1009.171.1prot_P-lacustris_contig1009.171.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1009 25217..28792 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815275.5203161-UTR-P-lacustris_contig1009:23794..250811622815275.5203161-UTR-P-lacustris_contig1009:23794..25081Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1009 23795..25081 +
1693493444.116334-UTR-P-lacustris_contig1009:23794..250811693493444.116334-UTR-P-lacustris_contig1009:23794..25081Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1009 23795..25081 +
1622815275.5320115-UTR-P-lacustris_contig1009:25192..252161622815275.5320115-UTR-P-lacustris_contig1009:25192..25216Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1009 25193..25216 +
1693493444.1286407-UTR-P-lacustris_contig1009:25192..252161693493444.1286407-UTR-P-lacustris_contig1009:25192..25216Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1009 25193..25216 +
1622815275.5937471-UTR-P-lacustris_contig1009:28792..290611622815275.5937471-UTR-P-lacustris_contig1009:28792..29061Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1009 28793..29061 +
1693493444.177954-UTR-P-lacustris_contig1009:28792..290611693493444.177954-UTR-P-lacustris_contig1009:28792..29061Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1009 28793..29061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815275.5412083-CDS-P-lacustris_contig1009:25216..252811622815275.5412083-CDS-P-lacustris_contig1009:25216..25281Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1009 25217..25281 +
1693493444.1362662-CDS-P-lacustris_contig1009:25216..252811693493444.1362662-CDS-P-lacustris_contig1009:25216..25281Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1009 25217..25281 +
1622815275.5528674-CDS-P-lacustris_contig1009:26231..263251622815275.5528674-CDS-P-lacustris_contig1009:26231..26325Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1009 26232..26325 +
1693493444.144347-CDS-P-lacustris_contig1009:26231..263251693493444.144347-CDS-P-lacustris_contig1009:26231..26325Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1009 26232..26325 +
1622815275.5650299-CDS-P-lacustris_contig1009:26842..269831622815275.5650299-CDS-P-lacustris_contig1009:26842..26983Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1009 26843..26983 +
1693493444.1523433-CDS-P-lacustris_contig1009:26842..269831693493444.1523433-CDS-P-lacustris_contig1009:26842..26983Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1009 26843..26983 +
1622815275.574924-CDS-P-lacustris_contig1009:27458..276021622815275.574924-CDS-P-lacustris_contig1009:27458..27602Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1009 27459..27602 +
1693493444.1605067-CDS-P-lacustris_contig1009:27458..276021693493444.1605067-CDS-P-lacustris_contig1009:27458..27602Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1009 27459..27602 +
1622815275.583569-CDS-P-lacustris_contig1009:28693..287921622815275.583569-CDS-P-lacustris_contig1009:28693..28792Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1009 28694..28792 +
1693493444.170161-CDS-P-lacustris_contig1009:28693..287921693493444.170161-CDS-P-lacustris_contig1009:28693..28792Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1009 28694..28792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1009.171.1

>prot_P-lacustris_contig1009.171.1 ID=prot_P-lacustris_contig1009.171.1|Name=mRNA_P-lacustris_contig1009.171.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=181bp
MVAPWPKVDDVPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPA
VVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGPPEGQAVRLVVQ
DGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAP
AKVVEEAKANLQAQRDQLKTVQQAIANLDL*
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mRNA from alignment at P-lacustris_contig1009:23795..29061+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1009.171.1 ID=mRNA_P-lacustris_contig1009.171.1|Name=mRNA_P-lacustris_contig1009.171.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5267bp|location=Sequence derived from alignment at P-lacustris_contig1009:23795..29061+ (Pleurocladia lacustris SAG_25_93)
TTTCGAGTCGCGTCATAAGTGATTGTTGCTGGTGCCAGCCCTTTGTCCCC TCCTCCGTCCAATCCAATCAAGTCAAATCAAGTCAATTTCAGTATTGGGT TCTTGCTGGTTCTTGCTGGTGGGGTACTGTACGATTTCGGCGAGGTAAAA GCCGGCATATTCTTTTCGTTGACGTACAGTGTGCACAAAACCATGGCACG CAGCCCCACCTCTCCCGCGTCTGCGCCACCCCTCAGTCCCTCACTGGCTG CTTGCACTCGCACGCACACGCGCATACAGTACTCGCTCCTCGATCTGCTG TCGCAGAAGCGCAGCCCTTGGCTTCTTCCACACGCATTCACGCACTGCCA CAGTAGTTAGGGTCGAGATTACACCGATTCCGACCAGCCCAAATGTGGAT GACAGGTGTAAGCGACGACAGCACCGAAAGGGCACACACGGACTGTATTA GGAAGAAACGATCCAGTAGGGGTATCTTCTGGTCCGTTTGGCCACAAGAA ACTCAAACACCCCCACTTGGATCCGACTCTTCCAATGGCGAGAGCGGACC CCGAGGCAGGTCATATATATATATATATTTATTTTCCGAATTCGAGAGCA GACCGCCGCTGCGGGCTCCCTTGCTCTATTGAGACCCTTTTGTTGCTGCA CATCACGAAGAACATCGCTACCCATCGTGGTTGGGGGTAACTACCACTGG ATTGGGGCGTCGTCTTCGGAGGGTAACCTTAAGTCCATAGTGGCGTCGAC GTTTGAAACAAACTTTCGCGATAAAGCCGTGAAAGAGTAGAGAGGAGAGG AGAGGAGAGCAAGGAAAAGAGTACACAGCAGCAACAAAACAATAAACAAT AAACAAAACACAACAGAGCGGCACAAAACCGAGAACATCATGCCGAACAA GTTGAGCAGCACGCAGCGCGCGAAGCGGAGTCCGCTCAGGCCGAGGTGGC CCGGCTGACGCAACTTCTTGCGGAAGCACGGGCCGCCACGGGCGAGAAGG GCACTCCGGCGCAGCGGGTCCCAGCGTCACGGCCGGCCCCCGAAAAGAGC CTTCTCCAACTCCCCACCAGGGAGGAGCCTATTGTGAGCCCCGACAGGCG TGACCACGGGGATGCTGTAGTGTTGCTAGATGAGCCCACACACACACCCG CCACCCGCCCCGCCTGAAATATCGGATCCCTGCCGTCTTTCCATGCCCGA GAGTTCAGGTACATCGAAGCCAGCAAGACGCGGATTGGTACCTTCGCCGC GACTGGCGAGGGCGACGAGGCGGAGACAAGGGCACAGGCGGAGGTAAGAG CGAGGGGCTCTCGTCGGACGCTGGTGTACGTGTTCGACACGTGCCTCCGG CTCCTTCACCCGTTCATGCCGTTCATCACAGAGGCGTTGTGGCAGCAGCT CCCGAGAAGAGGGGACGCGCTGATGGTGGCCCCGTGGCCCAAGGTGGATG ACGTGCCCCTTGCGATGGACGAGTCGGCGATCAGCAGGTGAGGTGGATGG ATCGGCGGGCGGATTATGGTATGTGACTTGGTTTGAGCGTGTGGATGTCA CGAGTTTTGTCTGAAATACATCTGAGTTCGACATTGTCGCTCCAGTGTTT CAGTTGGAATACAGCCTCGAAACCTTCGGACTTCGGACTATGGGAGGTGA CGTGGAACCTCGGTGAAGTCAGTTACGCGATCTGGGATGATTTCAAGATG CCCAAGGGTGGAGACGGGGTACTATCGTGGTTACACGAAAATTAAACTTG ATAGTCGACCAGGGAAAGCGGCGGCTTAGTCCTTCTCCAAAAGAGCGAAA GCGAAAAAAAAAGAAGGAAAAAAAAAAAAAAAGAAGGAAAGAAACAAACG TGTGTCCCCTTTCCCCTGTGTGACCCCGGCGCCCGCCCGCCTGCATGCAT GCATCACCGAAAAGTGCATGGGCTGGCGTCCGGAATAGATGGAACGACAA ACACTGACACTCACACACATTGTTGGCACTCTTGATCAAATGCATCGTAT GTTGTGTGTCCTTCTCGCTCTTCTATATAAGTCTCCTCTTTGTTTCGCTT TGAACATAACCCGTTGCATTCATATCCTTCCTCCGAACGATTCCGAAGAC GCTTGTGGAAATCCGGCGACGGAGTCACGGGAAACCTTGACGGATGACGT ACGCAGATGGCGCCAGCACCAGCAGCAGAAGCGGAGAACTCCACGATCAT CATCACCCACTCCAGCTGTTCGATACATCGCGTCCCCCCTCTCTCCTTCG CTTCATCCCATCCCGGCGTCGTGTGCGCTTTTTTTCCGAAAAAACACAAA ACATCAAAGGAAAGACTGTCATCTGAGAAGTCCCGTGCAGGTGGTTTATG TCCAACTCTTCACAGTGTCGGTTAAAATGACACCAGCCGCCTGTTTGACT TGTTTTTTGTTCATCGTGTCTCGATCGGCGAGATAAGGTTCGAGGCGATC CAGGCCTTGGTGCGCAGCGTTCGTAACGCGAAAGCGGAATACCAGGTCCC TCCGGGCAAGAAGATACCCGCCGTTGTACAGGTGTGAACCGTAACCTTTG GTTTTGATTTTCGTTGGAGTGAGTGACGGCTGTGGCGTATTTGTGATGAG GGACCGGCGTGGGAATGGTCTGGTGGTTGCCAAAGCGACACCAATCAGGT CACGGTCGTTCACGCACGTCGTGCGCTGGCGATCAGCAGCTGTATTCATA CAGGTGCCGGAGGACCAAAATTTTAGGTGGTTGGACACACGCGGGCAGGG TCCTAGCGAGTAAGTCACCGGTTCCTTGTCGTTTGCACGTGTGGGTGCCG GTGTTGGGTGGGTGCCTCCCGCCATTGTCTCGCCACTTGCCTATTCCTGT ATCGGTGGTGGTGGCACTGCCCGTCCTCCGTAAATTAGCGAACGTTCGAA ACGCCGAGGTCCATTTTTTGGCGGCACTGCTGTTTCGTGCCATCACAGGC CCAAGCATGACTTCCCACGACACCAAAACCAACGCCGTTTTTTCAGTACA ACTCCCGAACCAACTCGTTCGATACGTCATCAATGGCCATTCTTTCAGGT TTCGGATAAGGCGCTGCGATCAGATATCATGCAGGAGGTGGCCACGCTGT GCCTTCTGGGCAGGCTAGACGCCGACGGCCTAGAGGTGCGAGGCCTGGAC GGACCACCAGAAGGACAGGCCGTTCGTCTTGTCGTCCAGGTATGGTGTCG GAAAGTCTAGGATACCACGTAATCCCCAAATCAGGAGATGTGGCGGCTCC CCATCCCCCTACCCATCGCATTTACCCACCCACCGCATCGTTATGTCTGT TTTTGAAGAGATCGCTGCCAGCCGAGGTGGAGTACAATCGTCAGGTAGTG AACACCGTAGCGCGTATGCGACGTGCAGCAGTACACATGTCAAACCGCAT GCGTGGAGCGGAGGTGACGCGCTTCCACACATGCCGGTAAAAAAGCCTTA CTCGAGACCATTGTCGCACCGATCGCCGTTTCACGTGTTCACCTACCGTG ATAGGGTGATCCACAAATTGGCAGGCTTTTGCTCGCGTTGTATGCATGAC ATGATGATGGCCGATGAGGACTGACGGCCATGCTAGCCGCCGGTGATGCT GTGGGGGCTGAGTGTGGCTTGGATTTGACGCAACTTGGCTCGAAACGAAA CAATCCTTCTTCAGGACGGACTAGAAGTATACCTGCCCATGGCGGGTCTG GTCGACAAGGAAAAAGAGAGGGCGCGGCTGGAGAAGCAGGCGGGCAAGCT CGCCAAGGACATCGAAGTCTTGGAGAAACGCCTCCTGGGGTCGAACTTCG CAGAAAAGGTAGGTTCCTCGACTGATTGACCACACAGCTGCATAGTAGTT GATTGCCGCTGTGATCGTTCTCGTGGGTGTCGGATGCGTGCCATTGCAAC ACCAATACGTTGTCCATTGCAACAGGTGTGTCGATGCTCCTGGAAACCAC GAGTTACCTGCTGCTAACGCGCGTAGCTTGAGTTATTACCGCCTTCCCGT CTTTTTGTCGTTTTCTTTTTTTTTTCGATTCTCTGTTTTATCTATCGCAT GTCGAGGTTGCTTTTAAAAAAAGCGGTTCCTGAAAAATAGAAGGCCGTGC GGTTGCAACTTCGTCATGGAATCGGCAGCGTGGATAGAGATGCTACAGCT ATTAGTCGCATTCGAACCTCGGATAGTCGCACCGTTTTTTATACGGACGC GGGGTAGCGGTCCAGAATAACGGGATGCCAACACACGCACAAACTTTTTT GAAAGCATCGGCTTACACGATTGCGTAACCGCACGAATGCGAAAGCCGCA TGTGGAAACCCTGGCAAAGGCCCCAGCTGAGGCCGCAAAACACCGCGGAT GATGCTTTGTCCCCGCGGATACTGAAATTTTGCATGGTTTGCCGGACTGC GTACATCGCACGATTGCAGCAGCCGTTTAGACGGTCGTTGGCGGTTCTAC CAAACCACTCCTACGCGACGCGCGTGTGTGACGTGGGCCTGGCGAAAGCA TGTCCAGATCGTTCGACTGTTGCGCAGGTCTCGAAACGAACCACCTCGAA ATTCGCAAACCGTGCAGGCATGCAGCTGTCGATTGCAACAGAGCGTAGAG CGTAGGGCCCCTCGGTTGTGGCTTGCCGATCCCAGAGGGTAGAAACTTGT GCTTTGTGAAGGGAGAGACAAACAGACAACGATGAGGGCTCAGGCGAAGT GAACAGTCACCCCCCAAGGGCCGAGTTTCGAGTGCAGAAATAAACCTTGG CCAAGGCATGATTGTCCACAAATTCGTCCATCGATGCAATGAACTAGGTA CGTGCTTGTGTTAGACTTGTAGCGCGTCTTGCTGGCACCTCGGTGATCGC GCATCTATGTTTTCTGCTTCAATTCAATGCTCGCAAACGTCGTGTGCAGG CCCCGGCCAAGGTTGTGGAGGAAGCCAAGGCCAATCTGCAAGCCCAGAGG GATCAGCTCAAGACTGTACAGCAAGCCATCGCCAATCTCGACCTCTGACG ATGGATGAGACTGCATGGGTTTTGTTCTAGTCCTCTCGACCTCTCATCAA TGCTGTTGTGCATCCATGACGCGCGTTGTGTTTTCGCCTCGGCCTATCGA TGATGTGATATGGTCCACACCTTTAGAGGATTCGCGCAACATCGCTCGTG GAATCGGTTGCTCCTGCCATGCGGTTTGAGTTGTGGAAGCAATCGCTCAC AGCGCTGGGTCAGCGTTGTGTGGCTGGGGTGGGGCTGCGATTGCCGAAGA GTTGTCTCCCTGTACTA
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Coding sequence (CDS) from alignment at P-lacustris_contig1009:23795..29061+

>mRNA_P-lacustris_contig1009.171.1 ID=mRNA_P-lacustris_contig1009.171.1|Name=mRNA_P-lacustris_contig1009.171.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1086bp|location=Sequence derived from alignment at P-lacustris_contig1009:23795..29061+ (Pleurocladia lacustris SAG_25_93)
ATGGTGGCCCCGTGGCCCAAGGTGGATGACGTGCCCCTTGCGATGGACGA
GTCGGCGATCAGCAGATGGTGGCCCCGTGGCCCAAGGTGGATGACGTGCC
CCTTGCGATGGACGAGTCGGCGATCAGCAGGTTCGAGGCGATCCAGGCCT
TGGTGCGCAGCGTTCGTAACGCGAAAGCGGAATACCAGGTCCCTCCGGGC
AAGAAGATACCCGCCGTTGTACAGGTTCGAGGCGATCCAGGCCTTGGTGC
GCAGCGTTCGTAACGCGAAAGCGGAATACCAGGTCCCTCCGGGCAAGAAG
ATACCCGCCGTTGTACAGGTTTCGGATAAGGCGCTGCGATCAGATATCAT
GCAGGAGGTGGCCACGCTGTGCCTTCTGGGCAGGCTAGACGCCGACGGCC
TAGAGGTGCGAGGCCTGGACGGACCACCAGAAGGACAGGCCGTTCGTCTT
GTCGTCCAGGTTTCGGATAAGGCGCTGCGATCAGATATCATGCAGGAGGT
GGCCACGCTGTGCCTTCTGGGCAGGCTAGACGCCGACGGCCTAGAGGTGC
GAGGCCTGGACGGACCACCAGAAGGACAGGCCGTTCGTCTTGTCGTCCAG
GACGGACTAGAAGTATACCTGCCCATGGCGGGTCTGGTCGACAAGGAAAA
AGAGAGGGCGCGGCTGGAGAAGCAGGCGGGCAAGCTCGCCAAGGACATCG
AAGTCTTGGAGAAACGCCTCCTGGGGTCGAACTTCGCAGAAAAGGACGGA
CTAGAAGTATACCTGCCCATGGCGGGTCTGGTCGACAAGGAAAAAGAGAG
GGCGCGGCTGGAGAAGCAGGCGGGCAAGCTCGCCAAGGACATCGAAGTCT
TGGAGAAACGCCTCCTGGGGTCGAACTTCGCAGAAAAGGCCCCGGCCAAG
GTTGTGGAGGAAGCCAAGGCCAATCTGCAAGCCCAGAGGGATCAGCTCAA
GACTGTACAGCAAGCCATCGCCAATCTCGACCTCTGAGCCCCGGCCAAGG
TTGTGGAGGAAGCCAAGGCCAATCTGCAAGCCCAGAGGGATCAGCTCAAG
ACTGTACAGCAAGCCATCGCCAATCTCGACCTCTGA
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