mRNA_P-lacustris_contig996.16245.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig996.16245.1
Unique NamemRNA_P-lacustris_contig996.16245.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig996.16245.1 vs. uniprot
Match: D7FXV2_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV2_ECTSI)

HSP 1 Score: 361 bits (926), Expect = 2.310e-107
Identity = 320/775 (41.29%), Postives = 386/775 (49.81%), Query Frame = 1 
Query:    1 SLQMNICSSRSHTVVQFTITSTRSTTYIAAGAGXXXXXTRRGVGSGVGAVVASDKSQDASDRRRTGLQQPGEIGMEDGRESACDTYGGDNNLGRTAYRNRHSRSTCSCGS-------TPGIVMPDDPLEKISEKTNVTTRAKLSLVDLAGSERGGAGTETGGAANR-EKKRSQSHSESQFRTGPEPKGGSSQPQGKANWEAQEKERSKINSSLSALSNCLSCLGEAGRTHVPFRDSALTRLLQDSLVGGKTVVIATISPSVSAQDESISTLNFAARCMRVVSKQRINEVVNDALLLERARRQISDLRRRLAEAETAAHRTSFPLARFYPPPRVEEVEQQPMHHPPVSRMAKPSPGVLETNHFPRRPRXXXXXX----------------------------RLP-----------------------------GVIGDEKNGVRIDR-------------------YTEAGGDNNH-----------------------------EERPGDGYVA---------------------------------------TASESLRRKAGIVPAGATVANGERTEVVEEGHKAEITPLLNCRRGRDLVVRGQPAIVAAATADGATGGATVSEDVAASARSRNRIA----SVNGQVGRSSATFERHRNSPSLSREVVRSRAVRTPGDCSGVTKAVDPPPFRYSSPSTLSRGLALVARGSKELSSAAPTAVAVLSEGG--LQVDDKQLAIAALIERFSCREVELLRELEDWKAKCRSLEKST 1851
            S +MN  SSRSHT+VQFTITSTRST     G G     +  G  S VG VVA+D+SQ  +D+ RT L  PGEI + DG          D  +G  A+  +H  ++   GS       T  ++MP+   E  S    VTTRAKLSLVDLAGSE+GGAGTETG A  R E   SQ     Q + G  P+G  SQPQG+++W+AQE+ERS+INSSLSALSNC++CLGEA RTHVPFRDS LTRLLQDSLVGGKTVVIATI PS+ AQDESISTLNFAARCMRVVS+QR+NEVV+DALLLERARRQI+ LRRRLAEAETAA   S   A  +P    +E +Q P     +  MA+PSPGV+ET   PRRP                                   R P                              V+  ++NG R+                     Y    GD                                E R  DG++A                                       T S S RR++G  P   T AN E+T    EGH+A+   LLN RRG DLVVRG+ A  A                     R+R++      S +G+V  S A          L +   R +A     D S +TKA D P    S  S +S G   +AR +K+ S A  T     + GG    VDDK+LA AALIERFSCRE ELLRELE WKA+C+SLE ST
Sbjct:  530 STEMNTHSSRSHTIVQFTITSTRSTA--EPGVGPAPHLSSGGDSSEVG-VVAADESQATTDQIRTVLLHPGEISIGDG----------DGTVGEIAH-GKHDHTSSPHGSDSRRDHSTGVMMMPEHRSETDSGNAVVTTRAKLSLVDLAGSEKGGAGTETGVAGGRKETSGSQPQRGPQLQGGLGPQGVPSQPQGESSWKAQERERSRINSSLSALSNCIACLGEARRTHVPFRDSPLTRLLQDSLVGGKTVVIATIRPSIDAQDESISTLNFAARCMRVVSRQRVNEVVSDALLLERARRQITTLRRRLAEAETAAAVASCSPAPSHPHNGPDEGKQLPE----LWGMARPSPGVVET---PRRPPPCPGGDGENHDDDGCADGTDDDAVREYDGKPDHRREPTPPAVQKTVAKQALSLGLAAQMVDVAHGRDVVARDENGGRVSASGRDGSDAARPEPQGVGGTYVSDEGDRRRRNSAVNVVSSVLKMEAVTRSEPKRETLDDESRQRDGHIALGPSGPLTGSSLSTSQRQLSRSEVSLLRGKRVQAAPVAATESHSRRRRSGFTPVSTTAAN-EKTSDDLEGHQAKTKALLNARRGGDLVVRGRIATAAXXXXXXXXXXXXXXXXXXXXXRNRSKHLRHGKSPDGRVEASQA----------LPKGTERRKAPHRHVDGSFLTKAGDKPVVSCSPRSPVSSGG--LARVNKKRSCAVSTVAGTTAGGGGRRHVDDKRLATAALIERFSCREDELLRELETWKARCKSLETST 1270
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BLAST of mRNA_P-lacustris_contig996.16245.1 vs. uniprot
Match: A0A6H5KZW6_9PHAE (Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW6_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 2.400e-41
Identity = 121/233 (51.93%), Postives = 152/233 (65.24%), Query Frame = 1 
Query:    1 SLQMNICSSRSHTVVQFTITSTRSTTYIAAGAGXXXXXTRRGVGSGVGAVVASDKSQDASDRRRTGLQQPGEIGMEDGRESACDTYGGDNNLGRTAYRNRHSRSTCSCGSTPGIVMPDDPLEKISEKTNVTTRAKLSLVDLAGSERGGAGTETGGAANREKKR-SQSHSESQFRTGPEPKGGSSQPQGKANWEAQEKERSKINSSLSALSNCLSCLGEAGRTHVPFRDSALTR 696
            S +MN  SSRSHT+VQFTITSTRST     G       +  G  S VG VVA+D+SQ  +D+ RT  Q PGE+   DG  +A  T  G N+   ++    HSR+    G    +++P+   E  S    VTTRAKLSLVDLAGSE+GGAGT+TG A   ++ R SQS    Q + G  P+G  SQ  G+++W+AQE+ERS+INSSLSALSNC++CLGEA RTHVPFRDS LTR
Sbjct:  563 STEMNSHSSRSHTIVQFTITSTRSTA--EPGMETAPRLSSGGDYSEVGVVVATDESQATTDQIRTVSQHPGEVSNGDGDGTADKTAHG-NHQHSSSPHGSHSRNDGGTGVM--MMVPEHRSETGSGNAVVTTRAKLSLVDLAGSEKGGAGTQTGLAGGHKQTRGSQSQRGPQLQGGLGPQGVPSQTHGESSWKAQERERSRINSSLSALSNCIACLGEARRTHVPFRDSPLTR 790
[Close]
BLAST of mRNA_P-lacustris_contig996.16245.1 vs. uniprot
Match: A0A7S4DAY7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAY7_HETAK)

HSP 1 Score: 106 bits (264), Expect = 1.250e-23
Identity = 59/99 (59.60%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:  577 AQEKERSKINSSLSALSNCLSCLGEAGRTHVPFRDSALTRLLQDSLVGG-KTVVIATISPSVSAQDESISTLNFAARCMRVVSKQRINEVVNDALLLER 870
            A+ KE   IN+SLSAL NC++ L +  RTHVP+RDS LTRLLQDS+ GG +TVVIAT+ PS  AQ+E+ STL FA R  +V  + R NEVV+DA LL R
Sbjct:   18 AEAKELRAINASLSALGNCVAALADRKRTHVPYRDSVLTRLLQDSIGGGCRTVVIATVDPSPEAQEETASTLQFATRASQVACRLRPNEVVSDAELLRR 116
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BLAST of mRNA_P-lacustris_contig996.16245.1 vs. uniprot
Match: A0A0W8DU34_PHYNI (Kinesin-like protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DU34_PHYNI)

HSP 1 Score: 114 bits (286), Expect = 6.920e-23
Identity = 78/177 (44.07%), Postives = 100/177 (56.50%), Query Frame = 1 
Query:  370 ISEKTNVTTRAKLSLVDLAGSERGGAGTETGGAANREKKRSQSHSESQFRTGPEPKGGSSQPQGKANWEAQEKERSKINSSLSALSNCLSCLGEAGRTHVPFRDSALTRLLQDSLVGG-KTVVIATISPSVSAQDESISTLNFAARCMRVVSKQRINEVVNDALLLERARRQISDLR 897
            +   T +  RAKL+LVDLAGSE+  +   TG   +                                     KE + IN SLSAL N +S L    RTH+P+RDS LTRLLQDSL G  +TVVIATISPS SA DE+ISTL FA R   V  + ++NE+V+DA+LL +A+R+IS L+
Sbjct:  182 LESATTIIRRAKLNLVDLAGSEKWDSAVVTGSDRS-------------------------------------KELTSINQSLSALGNVISALVNPKRTHIPYRDSKLTRLLQDSLGGNTRTVVIATISPSESAVDETISTLQFADRAKSVTIRVKVNELVDDAILLAQAQREISRLK 321
[Close]
BLAST of mRNA_P-lacustris_contig996.16245.1 vs. uniprot
Match: A0A662Y1N3_9STRA (Kinesin motor domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1N3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.640e-22
Identity = 98/262 (37.40%), Postives = 132/262 (50.38%), Query Frame = 1 
Query:  292 RNRHSRST-CSCGSTPGIVMPDDPLEK----ISEKTNVTTRAKLSLVDLAGSERGGAGTETGGAANREKKRSQSHSESQFRTGPEPKGGSSQPQGKANWEAQEKERSKINSSLSALSNCLSCLGEAGRTHVPFRDSALTRLLQDSLVGG-KTVVIATISPSVSAQDESISTLNFAARCMRVVSKQRINEVVNDALLLERARRQISDLRRRLAEAETAAHRTSFP--LARFYPPPRVEEVEQQPMHHPPVSRMAKPSPGVLET 1053
            RNR  RST C+  S+    +    +E     +   T +  RAKLSLVDLAGSE+     +                                       + + KE + IN SLSAL N +S L    RTH+P+RDS LTRLLQDSL G  +TVVIATISPS SA +E+ISTL FA R   V ++ + NE+V+DA+LL +A+R+IS L+  L +    A  T+    +AR          E Q + H  V+ + K SP +  T
Sbjct:  522 RNRTIRSTECNEKSSRSHALLQLSIEVESRGLESATTIIRRAKLSLVDLAGSEKWDTDIDM-------------------------------------QDDRCKELTSINQSLSALGNVISALTNPRRTHIPYRDSKLTRLLQDSLGGNTRTVVIATISPSESALEETISTLQFADRAKCVTARVKANELVDDAILLAQAQREISRLKLLLKQKSAQAQVTALEEQVARLTREKTALAAENQRLRHT-VASLRKASPTISST 745
[Close]
BLAST of mRNA_P-lacustris_contig996.16245.1 vs. uniprot
Match: A0A7S1XR73_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XR73_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.470e-22
Identity = 76/174 (43.68%), Postives = 98/174 (56.32%), Query Frame = 1 
Query:  388 VTTRAKLSLVDLAGSERGGAGTETGGAANREKKRSQSHSESQFRTGPEPKGGSSQPQGKANWEAQEKERSKINSSLSALSNCLSCLGEAGRTHVPFRDSALTRLLQDSLVGG-KTVVIATISPSVSAQDESISTLNFAARCMRVVSKQRINEVVNDALLLERARRQISDLRRRL 906
            +  RA L+LVDLAGSE+ GA    G                                     E + KE + IN SLSAL NC+  L E GR HVPFRDSALTRLLQDSL GG +T V+A ++   +A +ES+STL FA+R   + +    NEVV+D +LL+RA+R+I  LRR+L
Sbjct:  291 IIRRALLNLVDLAGSEKWGARYNMG-------------------------------------EEETKELTSINQSLSALGNCIKALNEKGRQHVPFRDSALTRLLQDSLGGGGRTAVLACLAAGATAIEESVSTLQFASRANSITACVTYNEVVSDTVLLKRAQREIQRLRRKL 427
[Close]
BLAST of mRNA_P-lacustris_contig996.16245.1 vs. uniprot
Match: A0A024UGV1_9STRA (Kinesin-like protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UGV1_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.010e-22
Identity = 76/179 (42.46%), Postives = 106/179 (59.22%), Query Frame = 1 
Query:  373 SEKTNVTTRAKLSLVDLAGSERGGAGTETGGAANREKKRSQSHSESQFRTGPEPKGGSSQPQGKANWEAQEKERSKINSSLSALSNCLSCLGEAGRTHVPFRDSALTRLLQDSLVGG-KTVVIATISPSVSAQDESISTLNFAARCMRVVSKQRINEVVNDALLLERARRQISDLRRRL 906
            +E+T +  RAKL+LVDLAGSE+     +T  A   ++ R                                 E   IN+SLSAL N +S L +  R+H+P+RDS LTRLLQDSL G  +T+VIATISPSV+A +E++STL FA R  ++    ++NEVV+DA+LL RA+R+I  L+ +L
Sbjct:  253 NERTTIIRRAKLNLVDLAGSEK----WDTDVAMTHDRTR---------------------------------ELRNINASLSALGNVISALTDKKRSHIPYRDSKLTRLLQDSLGGNTRTIVIATISPSVAAVEETVSTLQFAERAKQIALNVQVNEVVDDAVLLARAQREIQKLKLQL 394
[Close]
BLAST of mRNA_P-lacustris_contig996.16245.1 vs. uniprot
Match: D0N5D9_PHYIT (Kinesin-like protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N5D9_PHYIT)

HSP 1 Score: 112 bits (281), Expect = 3.140e-22
Identity = 77/185 (41.62%), Postives = 104/185 (56.22%), Query Frame = 1 
Query:  370 ISEKTNVTTRAKLSLVDLAGSERGGAGTETGGAANREKKRSQSHSESQFRTGPEPKGGSSQPQGKANWEAQEKERSKINSSLSALSNCLSCLGEAGRTHVPFRDSALTRLLQDSLVGG-KTVVIATISPSVSAQDESISTLNFAARCMRVVSKQRINEVVNDALLLERARRQISDLRRRLAEAET 921
            +   T +  RAKL+LVDLAGSE+  +   TG   +                                     KE + IN SLSAL N +S L    RTH+P+RDS LTRLLQDSL G  +T+VIATISPS +A DE+ISTL FA R   V  + ++NE+V+DA+LL +A+R+IS L+  L ++ +
Sbjct:  255 LESATTIIRRAKLNLVDLAGSEKWDSAVVTGSDRS-------------------------------------KELTSINQSLSALGNVISALVNPRRTHIPYRDSKLTRLLQDSLGGNTRTIVIATISPSEAAVDETISTLQFADRAKCVTIRVKVNELVDDAILLAQAQREISRLKLLLKQSSS 402
[Close]
BLAST of mRNA_P-lacustris_contig996.16245.1 vs. uniprot
Match: A0A329SJC1_9STRA (Kinesin-like protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SJC1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.020e-22
Identity = 77/177 (43.50%), Postives = 99/177 (55.93%), Query Frame = 1 
Query:  370 ISEKTNVTTRAKLSLVDLAGSERGGAGTETGGAANREKKRSQSHSESQFRTGPEPKGGSSQPQGKANWEAQEKERSKINSSLSALSNCLSCLGEAGRTHVPFRDSALTRLLQDSLVGG-KTVVIATISPSVSAQDESISTLNFAARCMRVVSKQRINEVVNDALLLERARRQISDLR 897
            +   T +  RAKL+LVDLAGSE+  +    G   +                                     KE + IN SLSAL N +S L    RTH+P+RDS LTRLLQDSL G  +TVVIATISPS SA DE+ISTL FA R   V  + ++NE+V+DA+LL +A+R+IS L+
Sbjct:  148 LESATTIIRRAKLNLVDLAGSEKWDSAVVAGSDRS-------------------------------------KELTSINQSLSALGNVISALVNPKRTHIPYRDSKLTRLLQDSLGGNTRTVVIATISPSESAVDETISTLQFADRAKCVAIRVKVNELVDDAILLAQAQREISRLK 287
[Close]
BLAST of mRNA_P-lacustris_contig996.16245.1 vs. uniprot
Match: A0A662X3Y0_9STRA (Kinesin motor domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3Y0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.060e-22
Identity = 99/266 (37.22%), Postives = 130/266 (48.87%), Query Frame = 1 
Query:  280 RTAYRNRHSRST-CSCGSTPGIVMPDDPLEK----ISEKTNVTTRAKLSLVDLAGSERGGAGTETGGAANREKKRSQSHSESQFRTGPEPKGGSSQPQGKANWEAQEKERSKINSSLSALSNCLSCLGEAGRTHVPFRDSALTRLLQDSLVGG-KTVVIATISPSVSAQDESISTLNFAARCMRVVSKQRINEVVNDALLLERARRQISDLRRRLAEAETAAHRTSFP--LARFYPPPRVEEVEQQPMHHPPVSRMAKPSPGVLET 1053
            +   RNR  RST C+  S+    +    +E     +   T +  RAKLSLVDLAGSE+     +  G   RE                                      + IN SLSAL N +S L    RTHVP+RDS LTRLLQDSL G  +TVVIATISPS SA +E+ISTL FA R   V  + + NE+V+DA+LL +A+R+IS L+  L +    A  T+    +AR          E Q + H  V+ + K S  +  T
Sbjct:  369 KVGNRNRTIRSTECNEKSSRSHALLQLSIEVESRGLESATTIIRRAKLSLVDLAGSEKWDTDIDMQGDRCRE-------------------------------------LTSINQSLSALGNVISALTNPRRTHVPYRDSKLTRLLQDSLGGNTRTVVIATISPSESALEETISTLQFADRAKCVAVRVKANELVDDAILLAQAQREISRLKLLLKQKSAQAQVTTLEEQVARLMKEKAALAAENQKLRHT-VASLRKASSTISST 596
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig996.16245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXV2_ECTSI2.310e-10741.29Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KZW6_9PHAE2.400e-4151.93Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1... [more]
A0A7S4DAY7_HETAK1.250e-2359.60Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0W8DU34_PHYNI6.920e-2344.07Kinesin-like protein n=10 Tax=Phytophthora TaxID=4... [more]
A0A662Y1N3_9STRA1.640e-2237.40Kinesin motor domain-containing protein n=1 Tax=No... [more]
A0A7S1XR73_9STRA2.470e-2243.68Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A024UGV1_9STRA3.010e-2242.46Kinesin-like protein n=2 Tax=Aphanomyces invadans ... [more]
D0N5D9_PHYIT3.140e-2241.62Kinesin-like protein n=2 Tax=Phytophthora infestan... [more]
A0A329SJC1_9STRA5.020e-2243.50Kinesin-like protein n=1 Tax=Phytophthora cactorum... [more]
A0A662X3Y0_9STRA5.060e-2237.22Kinesin motor domain-containing protein n=1 Tax=No... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig996contigP-lacustris_contig996:670..3806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score371.7
Seed ortholog evalue6.6e-100
Seed eggNOG ortholog2880.D7FXV2
KEGG rclassRC02795
KEGG koko:K02335,ko:K10406
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759,KOG0242@2759,KOG4280@2759
Ec32 ortholog descriptionKinesin motor domain
Ec32 orthologEc-23_001390.1
EC2.7.7.7
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400,ko04812
Exons3
Model size1860
Cds size1851
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig996.16245.1prot_P-lacustris_contig996.16245.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig996 679..3806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817427.1778092-UTR-P-lacustris_contig996:669..6781622817427.1778092-UTR-P-lacustris_contig996:669..678Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig996 670..678 +
1693495060.1466246-UTR-P-lacustris_contig996:669..6781693495060.1466246-UTR-P-lacustris_contig996:669..678Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig996 670..678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817427.1881433-CDS-P-lacustris_contig996:678..13641622817427.1881433-CDS-P-lacustris_contig996:678..1364Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 679..1364 +
1693495060.161376-CDS-P-lacustris_contig996:678..13641693495060.161376-CDS-P-lacustris_contig996:678..1364Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 679..1364 +
1622817427.1987972-CDS-P-lacustris_contig996:2149..22221622817427.1987972-CDS-P-lacustris_contig996:2149..2222Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 2150..2222 +
1693495060.1766152-CDS-P-lacustris_contig996:2149..22221693495060.1766152-CDS-P-lacustris_contig996:2149..2222Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 2150..2222 +
1622817427.2100134-CDS-P-lacustris_contig996:2714..38061622817427.2100134-CDS-P-lacustris_contig996:2714..3806Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 2715..3806 +
1693495060.186495-CDS-P-lacustris_contig996:2714..38061693495060.186495-CDS-P-lacustris_contig996:2714..3806Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 2715..3806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig996.16245.1

>prot_P-lacustris_contig996.16245.1 ID=prot_P-lacustris_contig996.16245.1|Name=mRNA_P-lacustris_contig996.16245.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=617bp
MNICSSRSHTVVQFTITSTRSTTYIAAGAGAAAAATRRGVGSGVGAVVAS
DKSQDASDRRRTGLQQPGEIGMEDGRESACDTYGGDNNLGRTAYRNRHSR
STCSCGSTPGIVMPDDPLEKISEKTNVTTRAKLSLVDLAGSERGGAGTET
GGAANREKKRSQSHSESQFRTGPEPKGGSSQPQGKANWEAQEKERSKINS
SLSALSNCLSCLGEAGRTHVPFRDSALTRLLQDSLVGGKTVVIATISPSV
SAQDESISTLNFAARCMRVVSKQRINEVVNDALLLERARRQISDLRRRLA
EAETAAHRTSFPLARFYPPPRVEEVEQQPMHHPPVSRMAKPSPGVLETNH
FPRRPRPPPPPPRLPGVIGDEKNGVRIDRYTEAGGDNNHEERPGDGYVAT
ASESLRRKAGIVPAGATVANGERTEVVEEGHKAEITPLLNCRRGRDLVVR
GQPAIVAAATADGATGGATVSEDVAASARSRNRIASVNGQVGRSSATFER
HRNSPSLSREVVRSRAVRTPGDCSGVTKAVDPPPFRYSSPSTLSRGLALV
ARGSKELSSAAPTAVAVLSEGGLQVDDKQLAIAALIERFSCREVELLREL
EDWKAKCRSLEKSTEKA
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mRNA from alignment at P-lacustris_contig996:670..3806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig996.16245.1 ID=mRNA_P-lacustris_contig996.16245.1|Name=mRNA_P-lacustris_contig996.16245.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3137bp|location=Sequence derived from alignment at P-lacustris_contig996:670..3806+ (Pleurocladia lacustris SAG_25_93)
TCATTGCAGATGAACATATGTAGTAGTCGAAGCCACACTGTCGTCCAGTT
CACCATCACCAGCACGCGATCTACGACATACATTGCTGCTGGAGCGGGAG
CGGCAGCTGCTGCTACACGCCGCGGGGTTGGCAGCGGTGTTGGCGCAGTA
GTAGCTTCTGATAAATCTCAAGACGCATCTGACCGAAGAAGGACAGGCTT
GCAACAGCCCGGTGAAATAGGCATGGAAGATGGCCGCGAAAGTGCCTGCG
ACACCTATGGGGGTGATAACAACCTAGGTCGGACCGCCTATCGCAATCGT
CACAGCCGTAGCACGTGCAGCTGCGGCAGCACCCCGGGGATAGTGATGCC
GGACGACCCACTCGAGAAGATCTCCGAAAAGACCAACGTGACAACGCGCG
CGAAGCTAAGCCTAGTGGATCTCGCCGGCAGTGAAAGGGGAGGGGCAGGG
ACCGAGACCGGGGGAGCGGCGAACAGAGAAAAAAAGAGGTCGCAATCGCA
CAGCGAATCACAATTCCGCACCGGGCCGGAACCGAAAGGCGGGTCATCGC
AACCCCAAGGCAAAGCAAACTGGGAGGCTCAGGAGAAGGAACGGTCGAAA
ATAAACTCGAGTTTGAGCGCTCTCTCGAACTGCCTTTCGTGCCTAGGAGA
GGCGGGAAGAACGCACGTTCCGTTTCGGGACAGCGCTTTGACAAGGTGCG
TGAGAGAGTGGAGAAAATCTTTACAGTATACAGTGGTATGATCAAGTTGG
AGCCAATGGGACCTTCTTGCACCAACGATAAATGCTTGCCAAACATTGGT
TGCAAGAGCTGCTTCGAAGGTATGTAACGTGCGTCGTTCGAGGTGGGGTA
CACATAGTAGTCGATAGCGCAGAAGAGCCCACGGGAAAGTGGACAATAAA
ACCCGCGGGCGGACAATCAAGTGCCACACCCGTCTGTTCCGCTAGTGTGA
GACCCCTGCACAAGGTGGGGGCGAAGAAAACATGTACCCGTACGGGCCCA
ATCGGTGAAGAGGTTGATGAGGGGTGTGCAGCCCACAAGGCAATGTTCCA
AATGGCTTTATAGCGGAACAAAATCTACTTGAGAAAAGGAGGTAGTAGAG
TTGCCAGTTGGTTTTCAGTCGCAAGGCAAGGAATGTACTTTGTCCGCCAC
CGTAATCATGTGCATACATGAACGCTGCGTGCCTCAAACGCCTGGATTGA
ACGGAGTGGAGAGTCGAGGTGCAGATAGATCACATGTGCAGTCCGAGACA
GCTCTTTGACGGCTCAGAGGTATCTCTCTCTCAGTCATGTTCAGCAGTCG
ATGTTGCTATCGCTGTGTTTGTGGTTAAATTTTGTGTTGGTGTTGTTCCT
GTGGTGCTTTATATTGGAGCCGGGTTGAGCATCGGTGACGGGCTTTTAGA
CGAGTCATTTATCGGGTTTACGTTGGTCGAAGTGTTGGGTCAATGTCGCC
GCCCTTCTACCCCCTCTCCCGTTCCAACAGGCTACTCCAGGACTCGCTTG
TAGGAGGGAAAACGGTCGTCATCGCCACCATTAGCCCGTCAGTCAGCGCT
CAGGTGAATCAGGCAGGACGAGGTACATCTTGGTCGTTGTTATGTCCACT
TCGCGAGTCGTCCAAACCCCAGAGAAGCATGCCAGCGACATTCCGTGGCT
GTGCTCGAGATAGAAAGCAGCATTTGTGGTCACCAAGACAGAGCCCGAAC
ACATCTTGTGGATGAATCCCTAAATTGCGCGATGATCAAAACAATTCGGA
GAGCTGAAGACGAATACAACACTCCTGGTATCCTGCGCGACATGCGCGCG
AATCGCACGCAGCGACGCGACGACAAACGCTCACCCGTCCGTTCGTTGTT
TCGGCTGCGCCAGTAAGGTTTCGTGCACGCACAAAGCGACATACTTACTT
GCCCGTTGAAGAGCTGTAGCTTCCGTTTGGCATGAGACAGCTAGGCCTTT
ACAAGACGCACGTAAGACGCAGCCGAGAAACCGTGCTCCTTAACACTCGA
CGCCCCATCGTGAATGAACTCTCCTCCGCCACCCCATCCATTCAGGACGA
GAGCATCAGCACCCTAAACTTCGCGGCTCGTTGCATGAGAGTCGTCTCGA
AACAGCGCATCAACGAAGTCGTCAATGACGCTCTTCTTCTGGAGAGGGCG
AGGCGACAAATCTCCGATCTGCGTCGCCGCCTGGCCGAGGCGGAAACGGC
CGCCCATCGCACCTCCTTTCCGCTCGCGCGTTTCTATCCTCCTCCAAGAG
TCGAGGAGGTGGAACAGCAGCCGATGCACCACCCGCCAGTATCAAGGATG
GCGAAACCCTCTCCTGGGGTGCTGGAGACGAATCATTTTCCTCGTCGCCC
TCGTCCTCCCCCCCCTCCTCCTCGGCTCCCAGGCGTCATCGGCGACGAAA
AGAACGGCGTACGTATAGACAGGTACACAGAGGCCGGCGGTGATAACAAC
CACGAGGAGCGGCCAGGAGATGGTTACGTTGCAACAGCAAGCGAAAGCCT
TCGGCGAAAAGCAGGGATCGTGCCTGCCGGAGCCACCGTGGCGAACGGCG
AGAGAACCGAGGTTGTTGAGGAGGGGCATAAAGCCGAGATTACACCGCTC
CTGAACTGTCGCCGAGGGCGAGATCTCGTGGTCCGTGGCCAACCAGCCAT
CGTCGCCGCTGCCACCGCTGATGGGGCCACTGGTGGCGCCACCGTTTCGG
AGGATGTTGCCGCCTCTGCTCGTAGTCGGAACAGGATTGCATCCGTCAAT
GGCCAAGTTGGGCGATCAAGTGCTACGTTTGAGCGGCATAGGAATTCGCC
GTCTTTGTCGAGAGAGGTCGTAAGGTCGAGAGCCGTGCGTACACCTGGTG
ATTGCTCTGGTGTGACCAAAGCAGTTGACCCACCGCCCTTCCGCTATTCT
TCACCTTCCACTCTTTCCAGAGGGTTGGCCTTGGTGGCACGGGGTAGCAA
GGAGCTGTCGTCTGCGGCTCCGACCGCGGTGGCAGTGCTGAGTGAAGGGG
GTCTTCAAGTCGACGACAAGCAGTTAGCGATAGCGGCTTTGATTGAGAGG
TTTTCTTGTAGAGAGGTCGAGCTCCTGCGCGAGCTCGAGGACTGGAAGGC
AAAATGTAGGAGCCTGGAGAAATCGACAGAAAAGGCA
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Coding sequence (CDS) from alignment at P-lacustris_contig996:670..3806+

>mRNA_P-lacustris_contig996.16245.1 ID=mRNA_P-lacustris_contig996.16245.1|Name=mRNA_P-lacustris_contig996.16245.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3702bp|location=Sequence derived from alignment at P-lacustris_contig996:670..3806+ (Pleurocladia lacustris SAG_25_93)
ATGAACATATGTAGTAGTCGAAGCCACACTGTCGTCCAGTTCACCATCAC
CAGCACGCGATCTACGACATACATTGCTGCTGGAGCGGGAGCGGCAGCTG
CTGCTACACGCCGCGGGGTTGGCAGCGGTGTTGGCGCAGTAGTAGCTTCT
GATAAATCTCAAGACGCATCTGACCGAAGAAGGACAGGCTTGCAACAGCC
CGGTGAAATAGGCATGGAAGATGGCCGCGAAAGTGCCTGCGACACCTATG
GGGGTGATAACAACCTAGGTCGGACCGCCTATCGCAATCGTCACAGCCGT
AGCACGTGCAGCTGCGGCAGCACCCCGGGGATAGTGATGCCGGACGACCC
ACTCGAGAAGATCTCCGAAAAGACCAACGTGACAACGCGCGCGAAGCTAA
GCCTAGTGGATCTCGCCGGCAGTGAAAGGGGAGGGGCAGGGACCGAGACC
GGGGGAGCGGCGAACAGAGAAAAAAAGAGGTCGCAATCGCACAGCGAATC
ACAATTCCGCACCGGGCCGGAACCGAAAGGCGGGTCATCGCAACCCCAAG
GCAAAGCAAACTGGGAGGCTCAGGAGAAGGAACGGTCGAAAATAAACTCG
AGTTTGAGCGCTCTCTCGAACTGCCTTTCGTGCCTAGGAGAGGCGGGAAG
AACGCACGTTCCGTTTCGGGACAGCGCTTTGACAAGATGAACATATGTAG
TAGTCGAAGCCACACTGTCGTCCAGTTCACCATCACCAGCACGCGATCTA
CGACATACATTGCTGCTGGAGCGGGAGCGGCAGCTGCTGCTACACGCCGC
GGGGTTGGCAGCGGTGTTGGCGCAGTAGTAGCTTCTGATAAATCTCAAGA
CGCATCTGACCGAAGAAGGACAGGCTTGCAACAGCCCGGTGAAATAGGCA
TGGAAGATGGCCGCGAAAGTGCCTGCGACACCTATGGGGGTGATAACAAC
CTAGGTCGGACCGCCTATCGCAATCGTCACAGCCGTAGCACGTGCAGCTG
CGGCAGCACCCCGGGGATAGTGATGCCGGACGACCCACTCGAGAAGATCT
CCGAAAAGACCAACGTGACAACGCGCGCGAAGCTAAGCCTAGTGGATCTC
GCCGGCAGTGAAAGGGGAGGGGCAGGGACCGAGACCGGGGGAGCGGCGAA
CAGAGAAAAAAAGAGGTCGCAATCGCACAGCGAATCACAATTCCGCACCG
GGCCGGAACCGAAAGGCGGGTCATCGCAACCCCAAGGCAAAGCAAACTGG
GAGGCTCAGGAGAAGGAACGGTCGAAAATAAACTCGAGTTTGAGCGCTCT
CTCGAACTGCCTTTCGTGCCTAGGAGAGGCGGGAAGAACGCACGTTCCGT
TTCGGGACAGCGCTTTGACAAGGCTACTCCAGGACTCGCTTGTAGGAGGG
AAAACGGTCGTCATCGCCACCATTAGCCCGTCAGTCAGCGCTCAGGCTAC
TCCAGGACTCGCTTGTAGGAGGGAAAACGGTCGTCATCGCCACCATTAGC
CCGTCAGTCAGCGCTCAGGACGAGAGCATCAGCACCCTAAACTTCGCGGC
TCGTTGCATGAGAGTCGTCTCGAAACAGCGCATCAACGAAGTCGTCAATG
ACGCTCTTCTTCTGGAGAGGGCGAGGCGACAAATCTCCGATCTGCGTCGC
CGCCTGGCCGAGGCGGAAACGGCCGCCCATCGCACCTCCTTTCCGCTCGC
GCGTTTCTATCCTCCTCCAAGAGTCGAGGAGGTGGAACAGCAGCCGATGC
ACCACCCGCCAGTATCAAGGATGGCGAAACCCTCTCCTGGGGTGCTGGAG
ACGAATCATTTTCCTCGTCGCCCTCGTCCTCCCCCCCCTCCTCCTCGGCT
CCCAGGCGTCATCGGCGACGAAAAGAACGGCGTACGTATAGACAGGTACA
CAGAGGCCGGCGGTGATAACAACCACGAGGAGCGGCCAGGAGATGGTTAC
GTTGCAACAGCAAGCGAAAGCCTTCGGCGAAAAGCAGGGATCGTGCCTGC
CGGAGCCACCGTGGCGAACGGCGAGAGAACCGAGGTTGTTGAGGAGGGGC
ATAAAGCCGAGATTACACCGCTCCTGAACTGTCGCCGAGGGCGAGATCTC
GTGGTCCGTGGCCAACCAGCCATCGTCGCCGCTGCCACCGCTGATGGGGC
CACTGGTGGCGCCACCGTTTCGGAGGATGTTGCCGCCTCTGCTCGTAGTC
GGAACAGGATTGCATCCGTCAATGGCCAAGTTGGGCGATCAAGTGCTACG
TTTGAGCGGCATAGGAATTCGCCGTCTTTGTCGAGAGAGGTCGTAAGGTC
GAGAGCCGTGCGTACACCTGGTGATTGCTCTGGTGTGACCAAAGCAGTTG
ACCCACCGCCCTTCCGCTATTCTTCACCTTCCACTCTTTCCAGAGGGTTG
GCCTTGGTGGCACGGGGTAGCAAGGAGCTGTCGTCTGCGGCTCCGACCGC
GGTGGCAGTGCTGAGTGAAGGGGGTCTTCAAGTCGACGACAAGCAGTTAG
CGATAGCGGCTTTGATTGAGAGGTTTTCTTGTAGAGAGGTCGAGCTCCTG
CGCGAGCTCGAGGACTGGAAGGCAAAATGTAGGAGCCTGGAGAAATCGAC
AGAAAAGGCAGACGAGAGCATCAGCACCCTAAACTTCGCGGCTCGTTGCA
TGAGAGTCGTCTCGAAACAGCGCATCAACGAAGTCGTCAATGACGCTCTT
CTTCTGGAGAGGGCGAGGCGACAAATCTCCGATCTGCGTCGCCGCCTGGC
CGAGGCGGAAACGGCCGCCCATCGCACCTCCTTTCCGCTCGCGCGTTTCT
ATCCTCCTCCAAGAGTCGAGGAGGTGGAACAGCAGCCGATGCACCACCCG
CCAGTATCAAGGATGGCGAAACCCTCTCCTGGGGTGCTGGAGACGAATCA
TTTTCCTCGTCGCCCTCGTCCTCCCCCCCCTCCTCCTCGGCTCCCAGGCG
TCATCGGCGACGAAAAGAACGGCGTACGTATAGACAGGTACACAGAGGCC
GGCGGTGATAACAACCACGAGGAGCGGCCAGGAGATGGTTACGTTGCAAC
AGCAAGCGAAAGCCTTCGGCGAAAAGCAGGGATCGTGCCTGCCGGAGCCA
CCGTGGCGAACGGCGAGAGAACCGAGGTTGTTGAGGAGGGGCATAAAGCC
GAGATTACACCGCTCCTGAACTGTCGCCGAGGGCGAGATCTCGTGGTCCG
TGGCCAACCAGCCATCGTCGCCGCTGCCACCGCTGATGGGGCCACTGGTG
GCGCCACCGTTTCGGAGGATGTTGCCGCCTCTGCTCGTAGTCGGAACAGG
ATTGCATCCGTCAATGGCCAAGTTGGGCGATCAAGTGCTACGTTTGAGCG
GCATAGGAATTCGCCGTCTTTGTCGAGAGAGGTCGTAAGGTCGAGAGCCG
TGCGTACACCTGGTGATTGCTCTGGTGTGACCAAAGCAGTTGACCCACCG
CCCTTCCGCTATTCTTCACCTTCCACTCTTTCCAGAGGGTTGGCCTTGGT
GGCACGGGGTAGCAAGGAGCTGTCGTCTGCGGCTCCGACCGCGGTGGCAG
TGCTGAGTGAAGGGGGTCTTCAAGTCGACGACAAGCAGTTAGCGATAGCG
GCTTTGATTGAGAGGTTTTCTTGTAGAGAGGTCGAGCTCCTGCGCGAGCT
CGAGGACTGGAAGGCAAAATGTAGGAGCCTGGAGAAATCGACAGAAAAGG
CA
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