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Homology
BLAST of mRNA_P-lacustris_contig980.16126.1 vs. uniprot
Match: D7FUG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUG2_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 5.780e-15 Identity = 62/114 (54.39%), Postives = 74/114 (64.91%), Query Frame = 1
Query: 1954 KIQLGEGIPPEK-GRPTVVVDYLRFPAAGVEAEASTFVLPAIFAPCPTVAGTAALRSLPPSGHSAESFSELVSTSGEELLAEAPFDEEFPA--SLNSPPASFLSPARAGVAAEA 2286
K++L EG+ E G P VVVDYLRFPAAGVEAEASTFVLP +PC G A L SL S S +S L+S S EE+LA +D+ P+ + +SPPAS SPA A AAEA
Sbjct: 124 KMRLDEGVSTESSGEPRVVVDYLRFPAAGVEAEASTFVLPDPPSPCAAAVGAAVLESLMTSRPSMDSLPGLISPSEEEMLAAFSYDDFSPSPYTTSSPPASPPSPAHADDAAEA 237
BLAST of mRNA_P-lacustris_contig980.16126.1 vs. uniprot
Match: A0A6H5JNW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW7_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 4.050e-13 Identity = 59/104 (56.73%), Postives = 66/104 (63.46%), Query Frame = 3
Query: 135 VASIAPPAFTPACKESDTDSSAIAAIDWEVGVLDALGIKLRRLQQTKDE---LSETFAG-TAATPAG--RTLLTEELDKLELDKAKLREKKLALL--QQLPRST 422
+AS PP F P KE D D A+AAIDWE GVLD L KL+RL E ET AG TAATPA R L EELD+L +K KLREKKLALL QQ P+S+
Sbjct: 1 MASKEPPLFGPVGKEGDIDGFAMAAIDWEAGVLDTLEAKLKRLLPAAREEAPTEETTAGATAATPAEAERAHLMEELDRLGEEKEKLREKKLALLRQQQSPKSS 104
BLAST of mRNA_P-lacustris_contig980.16126.1 vs. uniprot
Match: D8LCF6_ECTSI (Mx2, Mx-like dynamin-related GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCF6_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 2.980e-6 Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 3
Query: 2901 GLVGWG*SLRMKKGGRCLVKGFKTCQTGSSTPARKVAGIKVGDTVHQLGGVQLGSYNEGIALLQQQRAPVIVTVLRR 3131
G +G G SL ++G RC+VKGF+ G P ++ AG+++GDT+ QL GV LGS+ + I L+Q+R V++T+LR+
Sbjct: 693 GPMGLGLSLA-EEGSRCVVKGFRPMPDGQPNPGQE-AGVQLGDTLEQLDGVHLGSFQDAIERLKQRRGTVVLTLLRQ 767
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-03_000290.1 |
| Exons | 5 |
| Model size | 2848 |
| Cds size | 312 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817413.0593104-UTR-P-lacustris_contig980:45355..46682 | 1622817413.0593104-UTR-P-lacustris_contig980:45355..46682 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig980 45356..46682 - |
| 1693495048.909054-UTR-P-lacustris_contig980:45355..46682 | 1693495048.909054-UTR-P-lacustris_contig980:45355..46682 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig980 45356..46682 - |
| 1622817413.0705314-UTR-P-lacustris_contig980:46949..47100 | 1622817413.0705314-UTR-P-lacustris_contig980:46949..47100 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig980 46950..47100 - |
| 1693495048.926679-UTR-P-lacustris_contig980:46949..47100 | 1693495048.926679-UTR-P-lacustris_contig980:46949..47100 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig980 46950..47100 - |
| 1622817413.0826287-UTR-P-lacustris_contig980:48062..48945 | 1622817413.0826287-UTR-P-lacustris_contig980:48062..48945 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig980 48063..48945 - |
| 1693495048.935699-UTR-P-lacustris_contig980:48062..48945 | 1693495048.935699-UTR-P-lacustris_contig980:48062..48945 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig980 48063..48945 - |
| 1622817413.0935552-UTR-P-lacustris_contig980:49570..49632 | 1622817413.0935552-UTR-P-lacustris_contig980:49570..49632 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig980 49571..49632 - |
| 1693495048.944609-UTR-P-lacustris_contig980:49570..49632 | 1693495048.944609-UTR-P-lacustris_contig980:49570..49632 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig980 49571..49632 - |
| 1622817413.1196108-UTR-P-lacustris_contig980:51428..51541 | 1622817413.1196108-UTR-P-lacustris_contig980:51428..51541 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig980 51429..51541 - |
| 1693495048.9624815-UTR-P-lacustris_contig980:51428..51541 | 1693495048.9624815-UTR-P-lacustris_contig980:51428..51541 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig980 51429..51541 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817413.1037655-CDS-P-lacustris_contig980:51116..51428 | 1622817413.1037655-CDS-P-lacustris_contig980:51116..51428 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig980 51117..51428 - |
| 1693495048.9534566-CDS-P-lacustris_contig980:51116..51428 | 1693495048.9534566-CDS-P-lacustris_contig980:51116..51428 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig980 51117..51428 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig980.16126.1 >prot_P-lacustris_contig980.16126.1 ID=prot_P-lacustris_contig980.16126.1|Name=mRNA_P-lacustris_contig980.16126.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=104bp
MASMQQLVASIAPPAFTPACKESDTDSSAIAAIDWEVGVLDALGIKLRRL QQTKDELSETFAGTAATPAGRTLLTEELDKLELDKAKLREKKLALLQQLP RST* back to topmRNA from alignment at P-lacustris_contig980:45356..51541- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig980.16126.1 ID=mRNA_P-lacustris_contig980.16126.1|Name=mRNA_P-lacustris_contig980.16126.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6186bp|location=Sequence derived from alignment at P-lacustris_contig980:45356..51541- (Pleurocladia lacustris SAG_25_93) GGCCGGCCCCCGAGGTTACCTTCGTCCGACACGTACGGTACCACATCTCC
TCAATCTCCGATCCCTCAACACACGTACTTGTCGCCACTCTACGTACGCT
GGCCTCTGCAACTATGGCCTCTATGCAACAGCTTGTGGCCTCAATAGCAC
CACCGGCATTTACTCCAGCATGTAAGGAGAGCGATACTGATAGTTCCGCC
ATAGCTGCAATCGATTGGGAAGTCGGTGTATTGGACGCCCTTGGGATCAA
GCTTCGACGTCTCCAACAAACTAAAGATGAACTCAGCGAAACCTTCGCCG
GAACAGCCGCCACGCCAGCGGGGAGAACGCTGCTGACGGAAGAGCTCGAT
AAGCTAGAGCTGGATAAAGCGAAGCTCAGGGAGAAAAAGCTCGCCCTCCT
ACAGCAGCTGCCCCGAAGCACTTAGGTATCCAGGGAGAAAGCGAGAGGGG
TCAATCATGTGTGCGTGTACAGCTAGTAGCGGGGAGATGTTGCTGCTTTG
TCGTCCCGTTCGTGTCGGCGATGTAGAGCAGTGTTGTGGGTGGTCGTGAG
CAAGCCCGCCATGTATCTCCCTCGGGTGTACGTTCGATGATCACCGCATC
TGCACTACGAAGCCGCGGTCGATTAGGTGCGGCGGCTCATTTTTGTGAAA
TGTTTCATCCGCATGCATGCGTGTGCGGGGTGAGGAAACAAGCAGGGGCG
AATGAAAACCCTTATTGCCTACAAGTATAAAATTTTCATTTTTTGAAACT
TAACTTGCGCCCAACATCTAGGAAATGCCATTCTGCCACCTAGGAGGAAG
CCGTTTTTTCTCTGCCTCGCCTCCATCCGATGGATGCACTGAAATCTTTC
ACATGTAAACTAAATGATGGTCTGTGACGGGAGAGCAGGAGCTCCACACA
TATATGTGTGATTGTTTGACTACGTGTAGCGACCAACACGTGTAGTTGTA
TGTATTCGGCGGCACGAAACTCGTGAAAGAACTCGACTGCCAAAGGGCGC
ATGATCCGTGATGGTTTCTATGAGGTGTGCTCCGTAAACACCGCGGCTGT
AGAACACATCTATCGGGTTAGGTATTTGCTGGATCCATCCGTTTTTGCAA
TTCATTTGATCCCTCCATTCTCGAGCACCATCGCATCCAACACCATTTCG
TCAAACCTTACGGCGAACGTGGCATTGCTCCCGCGATGTCCAAGAAACAT
GCGAACCACTGCCGCGGTTCTTGCGGCTTGCCCCTCGCAACCCACCTTAC
CGGGTGCTTGTGGCTCTAAGTGAATACCCACATGTCAATATCCATTATGT
TGCATGGTAGCAATCCAACACCGATATCGTTGCTTCCTCGTTTGCTTGTA
ACCGTTCTTTTGGTTGTTGCTCCCTCCATAATGACGGGCACAGCTCCGGG
TCCTCCAACATGTGACACGTATGGCGTTTGCCCTTGGCTTCTTCCTCGCT
GATCTCCATATATATCTCACTCGATCCGTCTCATTCGACCCGCGGAGAGA
GGCGAAATGCATTCAATATTGCGTGTTGTTTGCGTGTCGTGTTTTACCAC
CCAAATGAAATCGGTTCTTCGTCATCGGCAACATTACCTCATACGACCAT
CAACAAGGCTGTGGAAGACCAACAAAAAGCGAGCTTGTTGCGGTCGGAAC
ACTCGATATCCCTCTTTGATTTCATTCGCACAAATCGATGGCTGTTGTCA
AGTGAGGCAGACCGGGGGCGATTCTGATGCTACTAGCGAAGAAGCCGCAC
TGCATGGTGAATAGCCTACACCTAAGTGGGAGAGTAATACTCCGCTGGAC
GACACGGTGTGCCGTGGTTGTGTGCGGCTAGTACTTGTGCAGTTTCTATC
CCGACTTCCCAAGTTTGAGACATCCCTTTCGTTCGCACCGATTTTCTCCC
CATCTCAAGCGAATGGTGCAGCTCCGACGGGAGTTGGTGAAGATGGCGGA
GTCAAGATACAACTTGGCGAGGTATAGCCAAACAGTAGCGGGCATGCTAT
TATCAAGGTCACCTATTGGCAAAGTATTCATGGACATGTTTAACCTAGAC
AAGGTACACTAGAAAGGACTTAGTTACGACTTGATGTCCCGCCGTGGGTA
GACTAGGCATTGTACGCTCGACAAAGGAAAATATCGACAACGTCTTCTAG
GCAAAGTAAACTTGAACAAAAGAATACAGCGTGCCTCCACATAGAAGTAG
CACGTAGGCAAGGTATCACACAGTCGGGCCCTCGCACTGTTTCCTCGAAT
ACTTCTCGTTTTGGCTAAATCCCAGTACAAGTACGGGTGTGAACATCAAG
GGTTTTCGAAACCAGCTGCGAACGCAACGTATTTAGTACAAACCCAGATT
GGAAATAGGACAAACCTCTCGATCGTGTCAGTCGTTGCGCTTGGTACCTC
TCGGCTGCGGTAAGGCTATCGACGAGCCTGTTGGAAAATTGGCTATCGTC
GCTTCTTGCACCACCCTTCACAGCTGGCCGATTGTAGGGCGTCAAGAGCG
AGGAATGAAGGTTCGGTACAGTAGCCGCGCCGAATGACCCAGCAATTTTC
CAACAGGCTCCCCCGCTCTGCAACCGATTCTACTCTTTTGCTGCAGGGTA
TTCCACCTGAGAAGGGTCGACCGACAGTGGTGGTGGACTACCTTCGCTTT
CCTGCGGCAGGGGTGGAGGCGGAGGCATCGACCTTCGTGTTGCCCGCGAT
CTTTGCCCCTTGCCCGACTGTTGCTGGGACGGCTGCACTAAGATCGCTGC
CGCCCTCTGGCCATTCGGCGGAATCGTTCTCAGAGCTGGTCTCGACATCA
GGGGAAGAATTGCTTGCCGAGGCTCCGTTCGACGAAGAATTTCCCGCGTC
CCTGAATTCTCCCCCCGCTTCGTTTCTTTCTCCCGCCCGCGCGGGAGTAG
CAGCCGAAGCAAGCGGGGCTTCGGCGGCTGGCGACAAAGCGGCGTCGTTA
CCGGAAGCAGTCACAGCGTCGGCAGCAGCGGCAGAAGCAGCTCAAGAAAC
GAAGCAGGTGGTGCAAGAGCCAGCAGCGGTATATTCTCACAAGATTCTCC
CGTTTCCGGTGGCCGACGGTTCTCCCGCATCATTCCTCAAACGAAGCGAA
GAACAACAAGAACAGAAGCATGAGCAAGAACGAGATCCAAAAAAAGAAGG
ACGGAGTCACGAACACCAGCAGGCAAAAGAACGCGATCAACGAGGCAACC
CTGCGTCAGCCTCGTCTTCCGCCCCTGCCTTGCGATCTTCGTCTGCCGGC
CGTGCGGCGGCAGCAGCAGCAGTAGCAACGGCGGCGGCAGCAGTGGCCGC
GGCGGCGGCAGCGGCAGCGGCGGTGAGTTCTCTCTGGGGCTTCCCGTTAG
GTCGGTGAAGCGCCCTCAGACCAGTCTTCGGCAACCGAGACCGAGGCCGA
CCACGCCGGAACCTCTCGACAAGCCCTGACACAATTTTCCGGGGAGACTG
GAACTCAAGATGCAGCTGTATGTGGAGAGGTTAGTGCGAGTATCGCTTTC
GAGTATATCCCAACTGGCACTCAACCGATCACCTTTTATCACCTTTCTGA
ATCCTCGTTCCTTGTGCCGAAACAAGAAGTTAGAATACTATTGAGGGCGA
GCTCGTTTCTCTAGCATGGGGATCGCGCTGCGGTATCAAGTGTTTTATTG
TTTCCACTGGGCACTTTAGGCTGCCGCCGTTTGGCGAAATGTACACTACC
CGCTCTGTTTTTGTAGGCTCTTCAACACTTCTACTCACTCGACTTCCGAG
TGATTTATTTCAGAGCTGAAATGTTTTGCTATTCGAGCGCGTCTGTCCGC
TCTTTTGGAAGAGATTTCTTTCCGTAGTCCGCGTGGGCTGTCGTTGCACG
TGACCACAATCGAAACTGTTTTCCTTTTCGTGGGTCAGTGATGTTTGCAA
GAGGGGGTTGCCGTTGTCGCCGTTGATGCTATTTTTTCTTTGTTTGAACC
TTCTCTACGGCCGGCGGTCCGGTCCATTAAGGGTAGCGCAAGGTGTCTGT
CACCCCTTGAGCTTAATTTCTCAGTAGACCACACCAATTTAGAAACCCAT
TTTATGCTTGCCCACCACGCGTTGGTCGTTGTTATTATTGTTTTCAAGAC
AAGAAGCGCTCTCTAGCAAAAAATGTAGAAGCGTTCGAATTAAGGCGCCC
CCCTTTTGGTGCCGGCCCAATCTGCAAGAAACAAGACAAGCGTTCATTCG
GTTCCAAAGGTTTAGCTGAGCTCCCCCAGAACTTTGCATTTCATTAACAC
CTTGGTCACAACCACAAATAATTCGAAGATAACGGTACATGTTTACCTCG
CTCAAAGATCGGATACTGGTTAAGGGACCCGGAACCGTAGGATGAACCCC
TACGTTGCAGGTTTACATCCTGCTGGATTAGCACCTAAGGACCTCATTTG
TTTCTGCCACCTCGGTGCTCTTTGCCGTTGTTGCCGCACAGATTCGGAAG
CTGCGCTTCCGCAAGGTCAAACTGAGGGTTGCGGTTGGGGCTAGTGGGCT
GGGGCTAGTCTTTGCGGATGAAGAAAGGGGGCCGATGTCTTGTGAAGGGT
TTCAAGACATGCCAAACGGGAAGCTCAACCCCGGCCAGGAAAGTTGTTGC
TAGCATCCTGTCGCTTCTCACCATTGCCTTGCTTGCTGTGGCGAGGGGAG
TTGGAGTCGCTTCCCCTCAACTTGTCTGCCTTTTGCTTGCGAATGTGCTT
GGTGTTTGCCTGTCCGGTACCGTACTCTGACAGCAGGTAGTTTTTTTCAT
GTTCGTTGCTCTCTAATGTCAAATTTGTGCTCTCGTCTGCCTTGAACATT
TTGCTCTTGGAGCTCTTGGTGTTGACGCTGTGTTGTGTGTTATACATCCA
CCTATTCAGGTGGCCGGAATCAAGGTGGGGGATACCGTGCACCAGCTGGG
CGGCGTCCAACTGGGTTCGTACAACGAGGGCATCGCTTTGCTTCAGCAGC
AGAGGGCCCCCGTGATTGTGACTGTCCTTCGGCGGGATGGCAATGTGTGA
TGTCGTACTTCATTCAGCTGCCTCGGATGGAATGTACCCATCCTGTGAGC
CGTGCAACCACCAACCATTGTATCAGACTATATTTCACGCCGATTCTTCG
GCCAAGAATCTGACCGAACCTGTGGATCACCCAAACAGGATGATCACCCA
AACAGGACGAATGCACCTATTGGTGGAAACGGCGAAAGGTGCCGTGCATT
CTGTGTACAAAGCGACAGGGTCGGAAAATATGTACAGGGCCGGAAAATAT
GTACAGTATTTAGAATCGGTTTCCATCAGCGACAAACGCGGTAATTAACC
TCGTCCTCTCCCGAAACAGCTCGGTTTATAGGCTGTGAATGGTGTTATTC
AAGCGCTTTCTCTGGGTAGCGGACGTCATCACACCGAAACGAAACTAGGT
AATTTGTCAACCGTGTGTGGTGGTTGAATCCAGTTAATTGAACTTAACGA
GTGAAGTTGGGTTCATCGGATGAGACCGGAGTGACGGATTTCTACCGCCG
CGTTTGCTAGTAGCCGGGAGCGGCGTAAATGTTGTTGGGGTCCAAGAGAG
AGCGATGTTCGGTGAGTTTTTTTTTGGTAAAACTACATCCGTAAAAGTGC
GCGAGAAACTCGATTGCTCCACAACCATGAGGTTGCCAGCATCCAAAGGG
GTGGATTGGGAAATACCTTGTTTGGAGCTCTCCGCAGCCGTATTGATCGC
TTTTCGCAACCCATCGGTTGTGAATCAATCGAGCGTTGAAAGTCGGTCAA
GGGAGGGGTGTTTTCTCGCTTATTCGGTACATGCAGCACGAGAACGGTAC
ACAAGCTTGACCTATAACTTCTGAGAACTGCAGACAATGACCTACTGCTA
CAACGGTGGTACACGATTCGAGTCAAAGTCTCCGAAGGGGGGATACATTG
CAATGGTTGGTCTGATCGCAGATATAATTGGTCTGGCATGAATGAATGGA
AAATTCATAGAAAAGTATCGGGGAGTAAACCGGTCGCATAGACAGACTTG
CCCAGAACCAGATTCGAAAAAGATGGTTGATTATGACCTGGCGTGTTGAA
ACTAAGTCAAACCTCGGGTGTTCCTTGGCGGAACGACCAAGTAGCATATC
AATGTGCTAAACGTCATGTTCATGAGTGAAAAACTGCTGGGTCAGGCACA
CGTCAGACAAAACATTTTCGTGATGTAACTCGCGAG back to topCoding sequence (CDS) from alignment at P-lacustris_contig980:45356..51541- >mRNA_P-lacustris_contig980.16126.1 ID=mRNA_P-lacustris_contig980.16126.1|Name=mRNA_P-lacustris_contig980.16126.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=624bp|location=Sequence derived from alignment at P-lacustris_contig980:45356..51541- (Pleurocladia lacustris SAG_25_93) ATGGCCTCTATGCAACAGCTTGTGGCCTCAATAGCACCACCGGCATTTAC TCCAGCATGTAAGGAGAGCGATACTGATAGTTCCGCCATAGCTGCAATCG ATTGGGAAGTCGGTGTATTGGACGCCCTTGGGATCAAGCTTCGACGTCTC CAACAAACTAAAGATGAACTCAGCGAAACCTTCGCCGGAACAGCCGCCAC GCCAGCGGGGAGAACGCTGCTGACGGAAGAGCTCGATAAGCTAGAGCTGG ATAAAGCGAAGCTCAGGGAGAAAAAGCTCGCCCTCCTACAGCAGCTGCCC CGAAGCACTTAGATGGCCTCTATGCAACAGCTTGTGGCCTCAATAGCACC ACCGGCATTTACTCCAGCATGTAAGGAGAGCGATACTGATAGTTCCGCCA TAGCTGCAATCGATTGGGAAGTCGGTGTATTGGACGCCCTTGGGATCAAG CTTCGACGTCTCCAACAAACTAAAGATGAACTCAGCGAAACCTTCGCCGG AACAGCCGCCACGCCAGCGGGGAGAACGCTGCTGACGGAAGAGCTCGATA AGCTAGAGCTGGATAAAGCGAAGCTCAGGGAGAAAAAGCTCGCCCTCCTA CAGCAGCTGCCCCGAAGCACTTAG back to top
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