prot_P-lacustris_contig96.15949.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig96.15949.1
Unique Nameprot_P-lacustris_contig96.15949.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length394
Homology
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BLAST of mRNA_P-lacustris_contig96.15949.1 vs. uniprot
Match: A0A6H5JH84_9PHAE (Mre11_DNA_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH84_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.710e-9
Identity = 137/245 (55.92%), Postives = 142/245 (57.96%), Query Frame = 0 
Query:  158 KQSTNKRQGGASSGGRGSRAAADTAQGSTGNRXXXXXXXXXXXXXXXKPPTGVRSASARGAGRARVNYQEDDXXXXXXXXXXXXXXXXXXXXRAGGTDSFNPLEIDDXXXXXXXXXXXXRSDGKXXXXXXXXXXXXXXXXXXXXXXXTKPAA---PSKRVARSSRAXXXXXXXGKKRSAAGA---AEDSQVSEGSSVGAAKKRRLPAWATSXXXXXXXXXXXXXXXX---VEEVSSAISGWGSAR 393
            K   NKR GGASSGGRGSRAAA  AQ ST      XXXXXXXXXX    P G R  SARGAGRARV+Y+EDD                      GGTDSFNP+EIDD              DG XXXXXXXXXXXXXXXXXXXXXXX    A   P +R ARSSRA       G+KR A      A DSQVSE S                XXXXXXXXXXXXXXXX   VEEVSSAIS WGSAR
Sbjct:  648 KTPFNKR-GGASSGGRGSRAAAP-AQASTATSIRRXXXXXXXXXXQKPAPAG-RRPSARGAGRARVSYREDDGDDSSELDEVAPARRRG----GGGTDSFNPVEIDDDNDEGFV------DDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEAPPERAARSSRAAPATMSRGRKRPAXXXXXXAGDSQVSEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEEVSSAISAWGSAR 879
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig96.15949.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH84_9PHAE1.710e-955.92Mre11_DNA_bind domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig96contigP-lacustris_contig96:37828..41312 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig96.15949.1mRNA_P-lacustris_contig96.15949.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig96 37813..42175 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig96.15949.1 ID=prot_P-lacustris_contig96.15949.1|Name=mRNA_P-lacustris_contig96.15949.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=394bp
MRAAERAQSEAKRSAASAGTDDDDGNGDGGKARRDDDIDDDDGDMDMDNA
PLAAGMSARDGGRVGDGSRGKGKMPPPASSRRGAAAATDSLDDGDGDDYD
DDEEDRVEAPAKSRAKSRGAGDRRRSAASQAAAIDLASDSDDDDDDDDND
DFDHPHKKQSTNKRQGGASSGGRGSRAAADTAQGSTGNRRRGAGKSVAAA
ATAPKPPTGVRSASARGAGRARVNYQEDDGDDSSEVDEAPPKRGGGGGGR
AGGTDSFNPLEIDDDDDNYEENEEDRRSDGKGSESDMDDEEEEAVGRGRG
KKSKTKPAAPSKRVARSSRAAPAAPSRGKKRSAAGAAEDSQVSEGSSVGA
AKKRRLPAWATSSASNGGGRRRQDDDDDVEEVSSAISGWGSAR*
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