prot_P-lacustris_contig951.15899.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig951.15899.1
Unique Nameprot_P-lacustris_contig951.15899.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length412
Homology
BLAST of mRNA_P-lacustris_contig951.15899.1 vs. uniprot
Match: D8LFT0_ECTSI (TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT0_ECTSI)

HSP 1 Score: 506 bits (1303), Expect = 6.620e-172
Identity = 352/410 (85.85%), Postives = 362/410 (88.29%), Query Frame = 0
Query:    1 MVMPGPSLGAGEEVVMTAHVVHKKTPGTVWFTGRRALWRADDGKAAVQRVEIAWAAVKSFQCSPVSEARAMMRLLGVAEGQPPIIFRFTESPGETPREVLERAQAAVRNALKGDA----------KGGSNAAGVGSAGAAKGKSSKDGGYGGGGVKKMKWKTRG-VLGTASGGQSLRHRDSMPGGRMRDVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRHTGGG---GRLETGSVDPMVDLTSQWG 396
            M +PGPSLGAGEEVVMTAH VHKKTPGTVWFT RRALW+A DGKAAVQRVE+AWAAVKSFQCSP SEARAMMRLL V EGQPPIIFRFTE+PG TPREVLERAQAAVR ALKGDA          +GG+N  G G AG   G SSKD       +KKMKWKTRG +LGTASGGQSLRHRDSMPGGRMR+VHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          GRLE+GSVDPMVDLTSQWG
Sbjct:    1 MSVPGPSLGAGEEVVMTAHAVHKKTPGTVWFTSRRALWKAADGKAAVQRVEVAWAAVKSFQCSPASEARAMMRLLRVTEGQPPIIFRFTETPGGTPREVLERAQAAVRKALKGDAGAGRSKTGVAEGGTNGTGKGKAGKYGGSSSKDA------LKKMKWKTRGGLLGTASGGQSLRHRDSMPGGRMRNVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRLESGSVDPMVDLTSQWG 404          
BLAST of mRNA_P-lacustris_contig951.15899.1 vs. uniprot
Match: A0A6H5JXC6_9PHAE (BSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC6_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 3.620e-121
Identity = 209/238 (87.82%), Postives = 214/238 (89.92%), Query Frame = 0
Query:   71 MMRLLGVAEGQPPIIFRFTESPGETPREVLERAQAAVRNALKGDAKGGSNAAGV---GSAGAAKGKSSKDGGYGGGGVKKMKWKTRG-VLGTASGGQSLRHRDSMPGGRMRDVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRG 304
            MMRLL V EGQPPIIFRFTE+PG TPREVLERAQAAVR ALKGDA  G    GV   G+ GA KGK+ KDGG     +KKMKWKTRG +LGTASGGQSLRH  SMPGGRMRDVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRG
Sbjct:    1 MMRLLRVTEGQPPIIFRFTETPGGTPREVLERAQAAVRKALKGDAGAGRIRTGVAEGGTNGAGKGKAGKDGGSSKNALKKMKWKTRGGLLGTASGGQSLRH--SMPGGRMRDVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRG 236          
BLAST of mRNA_P-lacustris_contig951.15899.1 vs. uniprot
Match: A0A835YZ40_9STRA (BSD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ40_9STRA)

HSP 1 Score: 115 bits (288), Expect = 4.640e-24
Identity = 93/280 (33.21%), Postives = 136/280 (48.57%), Query Frame = 0
Query:   52 IAWAAVKSFQCSPVSEARAMMRLLGVAEGQPPIIFRFTESPGETPREVLERAQAAVRNALK------------------------GDAKGGSNAAGVGSAGAAKGKSSKDGGYGGGGVKKMKWKTRGVLGTASGGQSLRHRDSMPGGRMRDVHDA---RQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRG 304
            +AW+ VK    SP + A+AM+++   +    P++ +  +S   T  ++L  A++ +   L+                        G AK   +  G G  GA +G  S   G+        + +T G L + +GG++L      P         A   ++RAALLA D VL AQY ++V+G V+++ EFW  RR  L  E A   +R  G  S + +D V          F+L  R IH IF MYP V +AY+A VP E+SEKEFW KY QS Y+ RDRG
Sbjct:    1 MAWSLVKDHMVSPATSAKAMIKVNPTSSAVDPMVIQVLDSGLATAADILATARSTILKVLRSYAGSSXXXXXXXXXXXXXXXXXXGKAK---SLNGDGGEGAPRGAQSWGAGH-------KRQRTAGPL-SGAGGRALDAAAVQPPAXXXXXXAADVAQRRAALLARDAVLRAQYADVVEGGVLSDAEFWAGRRGMLEGEAAAARARRQGARSALGAD-VRPAVEGAKQVFRLTPRDIHQIFLMYPAVERAYKAKVPVELSEKEFWVKYFQSQYYTRDRG 268          
BLAST of mRNA_P-lacustris_contig951.15899.1 vs. uniprot
Match: A0A2P4XBN0_9STRA (General transcription factor IIH subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XBN0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.870e-22
Identity = 88/297 (29.63%), Postives = 131/297 (44.11%), Query Frame = 0
Query:   15 VMTAHVVHKKTPGTVWFTGRRALWRAD---DGKAAVQRVEIAWAAVKSFQCSPVSEARAMMRLLGVAEGQPPIIFRFTESPG--ETPREVLERAQAAVRNALKGDAKGGSNAAGVGSAGAAKGKSSKDGGYGGGGVKKMKWKTRGVLGTASGGQSLRHRDSMPGGRMRDVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGCG 306
            V+ A V  KK  G   F+ +   W  D   +  A    + + W+ V+  Q S +S  +AM+RL         ++  F    G  E   EV E+A+  +   L+ +                                       G  GT S   +L +             + +QRAALLA +  L  Q+ EMV+  +++EE+FW SRR  +A E +K   + TG  S + +DL A+      +K+ LNA  IH IF  YP V+ AYQ  VP +M+E EFW  + +S YF+RDR  G
Sbjct:    4 VLVALVRVKKRDGRAEFSLKGLRWTTDASPEAPAGHPPIIVPWSTVQDQQVSSLSSPKAMIRLRLAHNST--LVLEFVSESGSLEEAFEVREQAKDFIARRLRDN---------------------------------------GARGTRSNAAALCN-----------PTEIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASKR--QKTGKTSAILTDLAADNEGGNVVKYNLNAEVIHQIFIQYPAVYMAYQGQVPDKMTETEFWGAFFKSKYFHRDRKAG 246          
BLAST of mRNA_P-lacustris_contig951.15899.1 vs. uniprot
Match: K3WBE8_GLOUD (Uncharacterized protein n=2 Tax=Globisporangium ultimum TaxID=2052682 RepID=K3WBE8_GLOUD)

HSP 1 Score: 107 bits (268), Expect = 1.060e-21
Identity = 95/309 (30.74%), Postives = 143/309 (46.28%), Query Frame = 0
Query:   12 EEVVMTAHVVHKKTPGTVWFTGRRALWR-----------ADDGK-AAVQRVEIAWAAVKSFQCSPVSEARAMMRLLGVAEGQPPIIFRFTESPG-ETPREVLERAQAAVRNALKGDAKGGSNAAGVGSAGAAKGKSSKDGGYGGGGVKKMKWKTRGVLGTASGGQSLRHRDSMPGGRMRDVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGCG 306
            + VV+ A V  KK  G   F+ +   W            ADD   AA + + +AW+ V+  Q S +S  +AM+RL  +A G   ++  F  +   E   EV ++A+  +                                         KW    +L  +S  Q  RH  +     + +  + +QRAALLA +  L  Q+ EMV+  +++EE+FW SRR  +A E +K   + TG  S + +DL  +  + G + K+ LNA  IH IF  YP V  AYQA VP +M+E EFW  + +S YF+RDR  G
Sbjct:    3 DAVVLEARVRMKKRDGRAAFSEKWLRWTPDVSPEISAGGADDAAVAAAKPIVVAWSNVQDQQVSSLSSPKAMIRLR-MANGNVTLVLEFVSAKSLEHAFEVRDQAKILI----------------------------------------TKW----ILCNSSK-QQQRH-GAAARTPLCNATEIKQRAALLAANPTLKRQHTEMVNEGLISEEDFWASRRHLIANEASKR--QKTGKTSAILTDLSGDNDTGGNVVKYNLNAEVIHQIFIQYPAVHLAYQAQVPDKMTETEFWGAFFKSKYFHRDRKAG 262          
BLAST of mRNA_P-lacustris_contig951.15899.1 vs. uniprot
Match: A0A421FK41_9STRA (BSD domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FK41_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.010e-20
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 0
Query:  181 DARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGCG 306
            + +QRAALLA +  L  Q+ EMV+  +++EE+FW SRR  +A E +K   + TG  S + +DL A+  + G + K+ LNA  IH IF  YP V+ AYQ  VP +M+E EFW  + +S YF+RDR  G
Sbjct:  102 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASKR--QKTGKTSAILTDLAADNDAAGNVVKYNLNAEVIHQIFIQYPAVYMAYQGQVPDKMTETEFWGAFFKSKYFHRDRKAG 226          
BLAST of mRNA_P-lacustris_contig951.15899.1 vs. uniprot
Match: A0A662X0X0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X0X0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.690e-20
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 0
Query:  181 DARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGCG 306
            + +QRAALLA +  L  Q+ EMV+  +++EE+FW SRR  +A E +K   + TG  S + +DL  +  + G + K+ LNA  IH IF  YP V+ AYQA VP +M+E EFW  + +S YF+RDR  G
Sbjct:  150 EIKQRAALLAANPTLKRQHTEMVNDGLISEEDFWASRRHLIAAEASKR--QKTGKTSAILTDLAGDNDTGGNVVKYNLNAEVIHQIFIQYPAVYMAYQAQVPDKMTETEFWGAFFKSKYFHRDRKAG 274          
BLAST of mRNA_P-lacustris_contig951.15899.1 vs. uniprot
Match: A0A3F2RJ52_9STRA (BSD domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJ52_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.690e-20
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 0
Query:  181 DARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGCG 306
            + +QRAALLA +  L  Q+ EMV+  +++EE+FW SRR  +A E +K   + TG  S + +DL A+  + G + K+ LNA  IH IF  YP V+ AYQ  VP +M+E EFW  + +S YF+RDR  G
Sbjct:  123 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASKR--QKTGKTSAILTDLAADNDAAGNVVKYNLNAEVIHQIFIQYPAVYMAYQGQVPDKMTETEFWGAFFKSKYFHRDRKAG 247          
BLAST of mRNA_P-lacustris_contig951.15899.1 vs. uniprot
Match: A0A0P1APW3_PLAHL (General transcription factor iih n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APW3_PLAHL)

HSP 1 Score: 103 bits (258), Expect = 2.080e-20
Identity = 58/127 (45.67%), Postives = 80/127 (62.99%), Query Frame = 0
Query:  181 DARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGCG 306
            + +QRAALLA +  L  Q+ EMV+  +++EE+FW SRR  +A E +K   + T   S + +DL A   S G + K+ LNA  IH IFT YP V+ AYQ  VP +M+E EFW  + +S YF+RDR  G
Sbjct:  124 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASKR--QKTAKTSAILTDLAANNDSGGNVVKYNLNAEVIHQIFTQYPAVYMAYQEQVPDKMTETEFWGAFFKSKYFHRDRKAG 248          
BLAST of mRNA_P-lacustris_contig951.15899.1 vs. uniprot
Match: M4B6V9_HYAAE (BSD domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6V9_HYAAE)

HSP 1 Score: 103 bits (256), Expect = 3.690e-20
Identity = 58/127 (45.67%), Postives = 80/127 (62.99%), Query Frame = 0
Query:  181 DARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGCG 306
            + +QRAALLA +  L  Q+ EMV+  +++EE+FW SRR  +A E +K   + TG  S + +DL AE  + G + K+ LNA  IH IF  YP V  AYQ  VP +M+E EFW  + +S YF+RDR  G
Sbjct:  120 EIKQRAALLAANPTLKRQHMEMVNDGLISEEDFWASRRHLIAGEASKR--QKTGKTSAILTDLAAENDAGGNVVKYNLNAEVIHQIFIQYPAVHVAYQGQVPDKMTETEFWGAFFKSKYFHRDRKAG 244          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig951.15899.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFT0_ECTSI6.620e-17285.85TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXC6_9PHAE3.620e-12187.82BSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YZ40_9STRA4.640e-2433.21BSD domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A2P4XBN0_9STRA1.870e-2229.63General transcription factor IIH subunit (Fragment... [more]
K3WBE8_GLOUD1.060e-2130.74Uncharacterized protein n=2 Tax=Globisporangium ul... [more]
A0A421FK41_9STRA1.010e-2044.88BSD domain-containing protein n=2 Tax=Phytophthora... [more]
A0A662X0X0_9STRA1.690e-2044.88Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A3F2RJ52_9STRA1.690e-2044.88BSD domain-containing protein n=1 Tax=Phytophthora... [more]
A0A0P1APW3_PLAHL2.080e-2045.67General transcription factor iih n=1 Tax=Plasmopar... [more]
M4B6V9_HYAAE3.690e-2045.67BSD domain-containing protein n=1 Tax=Hyaloperonos... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005607BSD domainSMARTSM00751wurzfinal6coord: 249..301
e-value: 2.6E-7
score: 40.3
IPR005607BSD domainPFAMPF03909BSDcoord: 254..303
e-value: 8.1E-10
score: 38.6
IPR005607BSD domainPROSITEPS50858BSDcoord: 249..301
score: 11.021
IPR013876TFIIH p62 subunit, N-terminalPFAMPF08567PH_TFIIHcoord: 22..105
e-value: 2.3E-12
score: 47.1
IPR027079TFIIH subunit Tfb1/GTF2H1PANTHERPTHR12856TRANSCRIPTION INITIATION FACTOR IIH-RELATEDcoord: 15..393
NoneNo IPR availablePANTHERPTHR12856:SF0GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 1coord: 15..393
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 11..93
NoneNo IPR availableSUPERFAMILY140383BSD domain-likecoord: 179..218
NoneNo IPR availableSUPERFAMILY140383BSD domain-likecoord: 255..294

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig951contigP-lacustris_contig951:30051..39399 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig951.15899.1mRNA_P-lacustris_contig951.15899.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig951 26799..39421 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig951.15899.1 ID=prot_P-lacustris_contig951.15899.1|Name=mRNA_P-lacustris_contig951.15899.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=412bp
MVMPGPSLGAGEEVVMTAHVVHKKTPGTVWFTGRRALWRADDGKAAVQRV
EIAWAAVKSFQCSPVSEARAMMRLLGVAEGQPPIIFRFTESPGETPREVL
ERAQAAVRNALKGDAKGGSNAAGVGSAGAAKGKSSKDGGYGGGGVKKMKW
KTRGVLGTASGGQSLRHRDSMPGGRMRDVHDARQRAALLAGDEVLTAQYR
EMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTST
GTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFN
RDRGCGGGDGGGGGNNNSSVSAISGNKRKSLEAGGGAGGQDDMFLRLAAQ
EAEREKKDKAEGAAGGGAKRGRHTGGGGRLETGSVDPMVDLTSQWGITTR
GRWMTAIRWKN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005607BSD_dom
IPR013876TFIIH_BTF_p62_N
IPR027079Tfb1/GTF2H1