prot_P-lacustris_contig948.15854.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-lacustris_contig948.15854.1
Unique Name	prot_P-lacustris_contig948.15854.1
Type	polypeptide
Organism	Pleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length	77

Homology

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BLAST of mRNA_P-lacustris_contig948.15854.1 vs. uniprot
Match: D7FWY5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY5_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 4.060e-47
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0

Query:    1 MKNVEGSFPGDFTLGGNPFGSSWDAMSSETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 76
            MKNVEGSFPGDFTLGGNPFGSSWDAMS ETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN
Sbjct:   62 MKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 137

[Close]

BLAST of mRNA_P-lacustris_contig948.15854.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 9.030e-46
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 0

Query:    1 MKNVEGSFPGDFTLGGNPFGSSWDAMSSETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 76
            MKNVEGSFPGDFTLGGNPFGSSWDAMS ETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGY FN
Sbjct:  106 MKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

[Close]

BLAST of mRNA_P-lacustris_contig948.15854.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 2.630e-44
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0

Query:    1 MKNVEGSFPGDFTLGGNPFGSSWDAMSSETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 76
            MKNVEGSFPGDFTLGGNPFGSSWDAMS ETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN
Sbjct:  302 MKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377

[Close]

BLAST of mRNA_P-lacustris_contig948.15854.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 150 bits (379), Expect = 3.000e-44
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 0

Query:    1 MKNVEGSFPGDFTLGGNPFGSSWDAMSSETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 76
            MKNVEGSFPGDFTLGGNPFG+SWDAMS ETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDL+GA YTFN
Sbjct:  142 MKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

[Close]

BLAST of mRNA_P-lacustris_contig948.15854.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 4.770e-44
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = 0

Query:    1 MKNVEGSFPGDFTLGGNPFGSSWDAMSSETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 76
            MKNVEGSFPGDFT GGNPF SSWDAMS ETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN
Sbjct:  146 MKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

[Close]

BLAST of mRNA_P-lacustris_contig948.15854.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 149 bits (375), Expect = 1.180e-43
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 0

Query:    1 MKNVEGSFPGDFTLGGNPFGSSWDAMSSETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 76
            MKNVEGSFPGDFTLGGNPF SSWDAMS+ETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGA Y FN
Sbjct:  141 MKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

[Close]

BLAST of mRNA_P-lacustris_contig948.15854.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 146 bits (369), Expect = 3.560e-43
Identity = 71/76 (93.42%), Postives = 71/76 (93.42%), Query Frame = 0

Query:    1 MKNVEGSFPGDFTLGGNPFGSSWDAMSSETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 76
            MKNVEGSFPGDFTLGGNPF SSWDAMS ETQ SKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGA Y FN
Sbjct:  107 MKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

[Close]

BLAST of mRNA_P-lacustris_contig948.15854.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.870e-42
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = 0

Query:    1 MKNVEGSFPGDFTLGGNPFGSSWDAMSSETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 76
            MKNVEGSFPGDFT GGNPF SSWDAMS ETQ SKRAIELNNGRAAQMGILALMVHEELNNKPY+INDLLGA YTFN
Sbjct:  143 MKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

[Close]

BLAST of mRNA_P-lacustris_contig948.15854.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 139 bits (351), Expect = 4.400e-40
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 0

Query:    1 MKNVEGSFPGDFTLGGNPFGSSWDAMSSETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 76
            MKNVEGSFPGDF +GGNPF SSWD+MSSETQASKRAIELNNGRAAQMGIL +MVHEEL+N+PY+ NDLLGA YTFN
Sbjct:  136 MKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

[Close]

BLAST of mRNA_P-lacustris_contig948.15854.1 vs. uniprot
Match: D8LJH9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH9_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.080e-38
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 0

Query:    1 MKNVEGSFPGDFTLGGNPFGSSWDAMSSETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 76
            MKNVEGSFPGD T+GGNPFG+ WD MS ET+ SKRAIELNNGRAAQMGILA+M+HEE++N+PY+INDLL A YTFN
Sbjct:   31 MKNVEGSFPGDMTIGGNPFGAQWDKMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 106

The following BLAST results are available for this feature:

BLAST of mRNA_P-lacustris_contig948.15854.1 vs. uniprot

BLAST of mRNA_P-lacustris_contig948.15854.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWY5_ECTSI	4.060e-47	98.68	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JDS8_9PHAE	9.030e-46	97.37	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D8LNK6_ECTSI	2.630e-44	98.68	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
FCPB_MACPY	3.000e-44	94.74	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
A0A6H5JHT6_9PHAE	4.770e-44	96.05	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
FCPC_MACPY	1.180e-43	94.74	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
FCPD_MACPY	3.560e-43	93.42	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
A0A6H5KCX6_9PHAE	2.870e-42	92.11	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
FCPF_MACPY	4.400e-40	85.53	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
D8LJH9_ECTSI	1.080e-38	78.95	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 5..56 e-value: 2.3E-8 score: 34.8
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 1..69 e-value: 6.0E-5 score: 25.1
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 7..60
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 4..67
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 7..60

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-lacustris_contig948	contig	P-lacustris_contig948:1452..1682 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_93	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-lacustris_contig948.15854.1	mRNA_P-lacustris_contig948.15854.1	Pleurocladia lacustris SAG_25_93	mRNA	P-lacustris_contig948 1401..2359 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-lacustris_contig948.15854.1 ID=prot_P-lacustris_contig948.15854.1|Name=mRNA_P-lacustris_contig948.15854.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=77bp
MKNVEGSFPGDFTLGGNPFGSSWDAMSSETQASKRAIELNNGRAAQMGIL
ALMVHEELNNKPYVINDLLGAGYTFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln