mRNA_P-lacustris_contig932.15744.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig932.15744.1
Unique NamemRNA_P-lacustris_contig932.15744.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig932.15744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig932contigP-lacustris_contig932:68770..69369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size600
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig932.15744.1prot_P-lacustris_contig932.15744.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig932 68847..69164 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817361.047769-UTR-P-lacustris_contig932:68769..688461622817361.047769-UTR-P-lacustris_contig932:68769..68846Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig932 68770..68846 +
1693495005.810062-UTR-P-lacustris_contig932:68769..688461693495005.810062-UTR-P-lacustris_contig932:68769..68846Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig932 68770..68846 +
1622817361.077289-UTR-P-lacustris_contig932:69164..693691622817361.077289-UTR-P-lacustris_contig932:69164..69369Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig932 69165..69369 +
1693495005.8309178-UTR-P-lacustris_contig932:69164..693691693495005.8309178-UTR-P-lacustris_contig932:69164..69369Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig932 69165..69369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817361.0622976-CDS-P-lacustris_contig932:68846..691641622817361.0622976-CDS-P-lacustris_contig932:68846..69164Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig932 68847..69164 +
1693495005.82178-CDS-P-lacustris_contig932:68846..691641693495005.82178-CDS-P-lacustris_contig932:68846..69164Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig932 68847..69164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig932.15744.1

>prot_P-lacustris_contig932.15744.1 ID=prot_P-lacustris_contig932.15744.1|Name=mRNA_P-lacustris_contig932.15744.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=106bp
MALRPKMSHCFSFLFFIVSREVSAWLFLACTPTEQSARAKHSTTSPLFLG
RRCGMCDRFFGPGRWGAPWRLGGDGDCVDPLVRASRFSRSAFFSGCQRER
RGRQR*
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mRNA from alignment at P-lacustris_contig932:68770..69369+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig932.15744.1 ID=mRNA_P-lacustris_contig932.15744.1|Name=mRNA_P-lacustris_contig932.15744.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=600bp|location=Sequence derived from alignment at P-lacustris_contig932:68770..69369+ (Pleurocladia lacustris SAG_25_93)
GGAAAAAGGAAGACAGGTGGTCGGGGGAGGGGGTAATTTCTGGGTCGAAA
AATCCTTGTTTTGATGTTTTGGGTGCAATGGCTCTGAGACCAAAGATGAG
TCATTGTTTTAGTTTTCTGTTTTTTATTGTCTCGCGTGAAGTGAGCGCCT
GGTTGTTTTTGGCCTGCACCCCAACCGAACAGTCCGCTCGCGCGAAGCAC
AGCACCACGTCGCCGCTGTTCTTAGGACGAAGATGTGGAATGTGCGATCG
TTTTTTTGGTCCTGGTCGGTGGGGCGCGCCTTGGCGCCTTGGCGGCGACG
GAGATTGTGTAGATCCCTTGGTTCGTGCCAGCCGCTTCTCCCGGTCGGCT
TTCTTTTCTGGATGTCAGAGAGAGAGGAGAGGGAGACAGCGCTGACAAAT
ACGAGATGTGTGCTATTGATGAAACGGGGTACAAACATACACATAGCCGA
TTGGTGCGCGCCCACAGGATCGCTAGGCCACATGGCAGTTGAGAACCTCT
ACCCAGGCAGGTTGATATCGGACGATTTCTTTTGACCGCTTGCGACAAAA
CATTCCACCTGTTCCATGGAACGAATGGCCCCCAAACTCGTCAACCCTAC
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Coding sequence (CDS) from alignment at P-lacustris_contig932:68770..69369+

>mRNA_P-lacustris_contig932.15744.1 ID=mRNA_P-lacustris_contig932.15744.1|Name=mRNA_P-lacustris_contig932.15744.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=636bp|location=Sequence derived from alignment at P-lacustris_contig932:68770..69369+ (Pleurocladia lacustris SAG_25_93)
ATGGCTCTGAGACCAAAGATGAGTCATTGTTTTAGTTTTCTGTTTTTTAT
TGTCTCGCGTGAAGTGAGCGCCTGGTTGTTTTTGGCCTGCACCCCAACCG
AACAGTCCGCTCGCGCGAAGCACAGCACCACGTCGCCGCTGTTCTTAGGA
CGAAGATGTGGAATGTGCGATCGTTTTTTTGGTCCTGGTCGGTGGGGCGC
GCCTTGGCGCCTTGGCGGCGACGGAGATTGTGTAGATCCCTTGGTTCGTG
CCAGCCGCTTCTCCCGGTCGGCTTTCTTTTCTGGATGTCAGAGAGAGAGG
AGAGGGAGACAGCGCTGAATGGCTCTGAGACCAAAGATGAGTCATTGTTT
TAGTTTTCTGTTTTTTATTGTCTCGCGTGAAGTGAGCGCCTGGTTGTTTT
TGGCCTGCACCCCAACCGAACAGTCCGCTCGCGCGAAGCACAGCACCACG
TCGCCGCTGTTCTTAGGACGAAGATGTGGAATGTGCGATCGTTTTTTTGG
TCCTGGTCGGTGGGGCGCGCCTTGGCGCCTTGGCGGCGACGGAGATTGTG
TAGATCCCTTGGTTCGTGCCAGCCGCTTCTCCCGGTCGGCTTTCTTTTCT
GGATGTCAGAGAGAGAGGAGAGGGAGACAGCGCTGA
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