mRNA_P-lacustris_contig1003.139.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1003.139.1
Unique NamemRNA_P-lacustris_contig1003.139.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: D8LL05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL05_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 7.970e-89
Identity = 148/162 (91.36%), Postives = 158/162 (97.53%), Query Frame = 2 
Query:   35 MAGGQQQQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENKRAEFKSSQEAKA 520
            MAGGQQQQSIDLSVLSLEQLNQMKTQHEE+VQ LSGNF+KLRDAQARFSESISAVEALGSK E KEILVPLTQSLYVPGRI++ADKMMVDVGTGYYVQKDQQKTAEFLGRKK++VTTNLESLRNAIDVKRKNLEAIV+VM+RKIG+IE KRAEFKSS+EAKA
Sbjct:    1 MAGGQQQQSIDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQARFSESISAVEALGSKTEDKEILVPLTQSLYVPGRIVEADKMMVDVGTGYYVQKDQQKTAEFLGRKKDMVTTNLESLRNAIDVKRKNLEAIVMVMRRKIGDIETKRAEFKSSEEAKA 162
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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: A0A835ZFR4_9STRA (Prefoldin subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFR4_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.120e-48
Identity = 85/152 (55.92%), Postives = 118/152 (77.63%), Query Frame = 2 
Query:   53 QQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENKRAEFKSSQ 508
            Q+ +DLS LSLEQLNQ+KTQH+E+VQ L+ N+  LRD  AR+ E+ SAVEA+G K EG+EILVPLTQSLYVPG++I+ DK +VD+GTGYY +K Q++T EFL RK  +V  NL SLR  I++KRK  E + +VM++++ +IE  R+++ + Q
Sbjct:    7 QREVDLSSLSLEQLNQLKTQHQEEVQTLTANYAALRDGLARYQEAKSAVEAMGRKAEGREILVPLTQSLYVPGKVIEGDKFLVDIGTGYYAEKSQRETEEFLTRKAGMVEANLASLREVIEMKRKAFETLTMVMRQRLSQIEENRSKYMAQQ 158
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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: A0A7S3NIR8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIR8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.480e-35
Identity = 73/149 (48.99%), Postives = 107/149 (71.81%), Query Frame = 2 
Query:   53 QQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEA--LGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENKRAE 493
            QQ ID+S LSLEQLN MK +HEE VQ LS     ++ A+ RF ES + ++   L  + EGKE+LVPLTQSLYV G ++DAD+++VD+GTGY++QK  Q   E + RK ++VT N++S+   ++ K++NL AIV VM+ K+ +I+ ++AE
Sbjct:    5 QQQIDISKLSLEQLNSMKQEHEESVQELSSQLETMKLAEGRFRESRNTLDIIKLDDQAEGKEMLVPLTQSLYVSGNVLDADQVLVDIGTGYFLQKSVQGAQEMIDRKLKVVTQNMDSIHTVVNQKQENLNAIVTVMQYKMQQIQKQKAE 153
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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: A0A2P6NP58_9EUKA (Prefoldin subunit 5 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NP58_9EUKA)

HSP 1 Score: 134 bits (337), Expect = 8.160e-34
Identity = 66/142 (46.48%), Postives = 108/142 (76.06%), Query Frame = 2 
Query:   53 QQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIE 478
            QQ ID+S LSLEQLN  K Q EE+VQ LS ++ +L+ A ARF++S  A+ A+ ++ EGK +LVPLT SL+VPG++ + +++++D+GTGYYV K  ++ ++F  RK +++  N + +  A+ VKRKNLE++++VM++KIG+++
Sbjct:    6 QQGIDISQLSLEQLNTFKQQFEEEVQVLSNSWQQLKLASARFTDSKDALSAIKTENEGKAMLVPLTTSLFVPGQLTNTEQVLIDIGTGYYVTKPVKQASDFFDRKIKMINDNADQVAQAVSVKRKNLESVLLVMQQKIGQMQ 147
[Close]
BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: F0YDJ5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDJ5_AURAN)

HSP 1 Score: 129 bits (323), Expect = 8.270e-32
Identity = 64/150 (42.67%), Postives = 102/150 (68.00%), Query Frame = 2 
Query:   62 IDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENKRAEFKSSQE 511
            +D+S LSL+QLNQ+K+QHE+++  L      L+ A+ RF +S  A+ A+    EGK +LVPLTQSLYVPG++ D D ++V++GTGYY++K +      + RK ++V  N E++   +  K +N EAIV++M+ K+ +I+ K+AEF   Q+
Sbjct:    1 MDISTLSLDQLNQLKSQHEQELNQLRERHSSLKQAEGRFRQSKDALAAISKDDEGKSMLVPLTQSLYVPGKLCDVDSLLVELGTGYYLEKKKDDADAMIDRKIKLVADNAENITTVVAQKTRNHEAIVMMMQHKMAQIQEKKAEFDRQQD 150
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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: A0A7S2C3Z7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3Z7_9STRA)

HSP 1 Score: 129 bits (323), Expect = 9.870e-32
Identity = 64/154 (41.56%), Postives = 108/154 (70.13%), Query Frame = 2 
Query:   41 GGQQQQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENKRAEFKS 502
            GG   + IDLS + + QLN +KT HE+++  L+GN+  L+ AQ++ + ++  +  +GS+ EG+EILVPLT SLYVPG I D +K+++DVGTGY+V+K   K  +F+ RK ++VT N + ++N    K+KNLE IV++M++++  ++  + + K+
Sbjct:    5 GGGGGREIDLSQMDINQLNDLKTSHEQEIDQLTGNWRTLKHAQSKLNTAVVCLNEVGSQ-EGREILVPLTPSLYVPGTICDTNKVLLDVGTGYFVEKSLAKAKDFVDRKNKMVTVNADQIQNVTQQKQKNLETIVMIMRQRMAMMQQAQEDAKA 157
[Close]
BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: A0A068S4K0_9FUNG (Prefoldin-domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068S4K0_9FUNG)

HSP 1 Score: 124 bits (312), Expect = 3.160e-30
Identity = 71/143 (49.65%), Postives = 99/143 (69.23%), Query Frame = 2 
Query:   41 GGQQQQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGS-KVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKI 466
            G QQQQ+++++ L L  L Q+KTQ EE++  L+ ++ KLR AQARFS+   +VE+L S K + K ILVPLT SLYVPG++ D +K++VDVGTGYYV+K       F   K+E V  NLE L+  I+ K+ +L AIV VM+ K+
Sbjct:    2 GSQQQQTVNITDLDLPSLQQVKTQLEEELSHLTQSYGKLRGAQARFSDCADSVESLKSEKADDKTILVPLTSSLYVPGKLSDVEKVIVDVGTGYYVEKSLDGATSFYKTKEEYVKQNLEKLQETINGKQSSLRAIVNVMQDKV 144
[Close]
BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: L8HDI9_ACACA (Prefoldin, alpha subunit n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HDI9_ACACA)

HSP 1 Score: 124 bits (310), Expect = 5.570e-30
Identity = 64/144 (44.44%), Postives = 98/144 (68.06%), Query Frame = 2 
Query:   41 GGQQQQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGE 472
            GGQQ Q I ++ LSLEQL+ +K Q EE+ Q L+ +  KL+ A  RF +S  ++ AL  +  G+E+L PLT SLYV G++ + + +M+D+GTGYY+++  Q+  E++ RK  +V  N E L+ A+  KRKNLEAI+ VM+ K+ +
Sbjct:    5 GGQQGQPIPITSLSLEQLSNLKQQFEEEAQTLAASLQKLKTAGQRFLDSKDSLAALTPETNGREVLAPLTSSLYVKGKLTNVEAVMIDIGTGYYIERTPQQAQEYVDRKLGLVQENAEKLQQALLTKRKNLEAIIGVMQEKMAQ 148
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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: A0A6U1PSU8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PSU8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.060e-29
Identity = 64/152 (42.11%), Postives = 105/152 (69.08%), Query Frame = 2 
Query:   53 QQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENKRAEFKSSQ 508
            ++ IDLS LS+EQL+ +K Q++E++  L+ +   L  A+ +F E+  A+  +    EG++I+VPLT SLYVPGR+ + +K+MVD+GTGYY +K+  +  EF+ RK ++++ N++SL + I  K KN + +  VM++K+ +I   R EFKSSQ
Sbjct:    7 EREIDLSGLSIEQLSNLKQQNDEEMTQLNESLGSLNAAKLKFLEAKHALTEIPPNGEGRQIMVPLTGSLYVPGRLHEPNKVMVDIGTGYYAEKNSTQAKEFIDRKVKMISDNIDSLSSLITTKHKNADVVAYVMQQKLEQINANRNEFKSSQ 158
[Close]
BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: A0A7S3ZUY5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUY5_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.310e-29
Identity = 64/153 (41.83%), Postives = 100/153 (65.36%), Query Frame = 2 
Query:   53 QQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENKRAEFKSSQE 511
            QQ +D+S +SLEQLN  K Q E +++ L      L+ A+ RF +S  A+ A+    EG+ +LVPLTQSLYVPG + D D+++V++GTGYY++K QQ   E L RK   V+ N E +   +  K++N +AIV +M+ K+ +I+ +R+E +  Q+
Sbjct:    3 QQQVDISAMSLEQLNTYKGQFENEIKQLHARHSGLKQAEGRFRQSKDALAAISKDDEGRRMLVPLTQSLYVPGELGDPDQLLVELGTGYYIEKTQQGATELLDRKIGTVSKNAEDINTVVASKQQNYDAIVQMMQVKMAQIQERRSELQRQQD 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL05_ECTSI7.970e-8991.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZFR4_9STRA3.120e-4855.92Prefoldin subunit-domain-containing protein n=1 Ta... [more]
A0A7S3NIR8_9STRA2.480e-3548.99Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2P6NP58_9EUKA8.160e-3446.48Prefoldin subunit 5 n=1 Tax=Planoprotostelium fung... [more]
F0YDJ5_AURAN8.270e-3242.67Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2C3Z7_9STRA9.870e-3241.56Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A068S4K0_9FUNG3.160e-3049.65Prefoldin-domain-containing protein n=2 Tax=Lichth... [more]
L8HDI9_ACACA5.570e-3044.44Prefoldin, alpha subunit n=1 Tax=Acanthamoeba cast... [more]
A0A6U1PSU8_9STRA1.060e-2942.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3ZUY5_9STRA1.310e-2941.83Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1003contigP-lacustris_contig1003:22354..27170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score279.6
Seed ortholog evalue9.1e-73
Seed eggNOG ortholog2880.D8LL05
Preferred namePFDN5
KEGG rclassRC00055,RC00523
KEGG koko:K01881,ko:K03678,ko:K04797,ko:K09504
KEGG ReactionR03661
KEGG Pathwayko00970,ko03018,ko05203,map00970,map03018,map05203
KEGG ModuleM00359,M00360,M00391
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0003674,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0007021,GO:0007275,GO:0007423,GO:0008092,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0015631,GO:0016043,GO:0016272,GO:0019219,GO:0019222,GO:0022607,GO:0023051,GO:0023057,GO:0030111,GO:0030178,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032153,GO:0032501,GO:0032502,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034622,GO:0043010,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051286,GO:0060041,GO:0060255,GO:0060828,GO:0065003,GO:0065007,GO:0071840,GO:0080090,GO:0090090,GO:0140110,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.sister chromatid segregation
EggNOG OGsCOG1730@1,KOG3048@2759
Ec32 ortholog descriptionPrefoldin
Ec32 orthologEc-11_006250.1
EC6.1.1.15
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03019,ko03029,ko03110
Exons5
Model size1450
Cds size489
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.5153325-UTR-P-lacustris_contig1003:22353..232801622815270.5153325-UTR-P-lacustris_contig1003:22353..23280Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 22354..23280 -
1693493441.3437378-UTR-P-lacustris_contig1003:22353..232801693493441.3437378-UTR-P-lacustris_contig1003:22353..23280Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 22354..23280 -
1622815270.5756397-UTR-P-lacustris_contig1003:25142..251471622815270.5756397-UTR-P-lacustris_contig1003:25142..25147Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 25143..25147 -
1693493441.3955953-UTR-P-lacustris_contig1003:25142..251471693493441.3955953-UTR-P-lacustris_contig1003:25142..25147Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 25143..25147 -
1622815270.5858126-UTR-P-lacustris_contig1003:27141..271701622815270.5858126-UTR-P-lacustris_contig1003:27141..27170Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 27142..27170 -
1693493441.4052558-UTR-P-lacustris_contig1003:27141..271701693493441.4052558-UTR-P-lacustris_contig1003:27141..27170Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 27142..27170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.5274773-CDS-P-lacustris_contig1003:23280..234361622815270.5274773-CDS-P-lacustris_contig1003:23280..23436Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 23281..23436 -
1693493441.354388-CDS-P-lacustris_contig1003:23280..234361693493441.354388-CDS-P-lacustris_contig1003:23280..23436Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 23281..23436 -
1622815270.5407057-CDS-P-lacustris_contig1003:23846..239751622815270.5407057-CDS-P-lacustris_contig1003:23846..23975Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 23847..23975 -
1693493441.3629103-CDS-P-lacustris_contig1003:23846..239751693493441.3629103-CDS-P-lacustris_contig1003:23846..23975Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 23847..23975 -
1622815270.550518-CDS-P-lacustris_contig1003:24309..243781622815270.550518-CDS-P-lacustris_contig1003:24309..24378Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 24310..24378 -
1693493441.3708243-CDS-P-lacustris_contig1003:24309..243781693493441.3708243-CDS-P-lacustris_contig1003:24309..24378Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 24310..24378 -
1622815270.5661533-CDS-P-lacustris_contig1003:25007..251421622815270.5661533-CDS-P-lacustris_contig1003:25007..25142Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 25008..25142 -
1693493441.3787212-CDS-P-lacustris_contig1003:25007..251421693493441.3787212-CDS-P-lacustris_contig1003:25007..25142Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 25008..25142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1003.139.1prot_P-lacustris_contig1003.139.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1003 23281..25142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1003.139.1

>prot_P-lacustris_contig1003.139.1 ID=prot_P-lacustris_contig1003.139.1|Name=mRNA_P-lacustris_contig1003.139.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=163bp
MAGGQQQQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSE
SISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKD
QQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENK
RAEFKSSQEAKA*
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mRNA from alignment at P-lacustris_contig1003:22354..27170-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1003.139.1 ID=mRNA_P-lacustris_contig1003.139.1|Name=mRNA_P-lacustris_contig1003.139.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4817bp|location=Sequence derived from alignment at P-lacustris_contig1003:22354..27170- (Pleurocladia lacustris SAG_25_93)
CCGACCTGCGCGACCACGTCAGGAAGAAGGTGATATAATCTCAGCATCGT
CTATTGTTTGTAGGCTCGATGCCTGTGGCAACGCCATCCTTTTGCTAAGT
GGCGCTACCTACCTGTATTGCCCTAACCATCCACGAGACCTCAGTATGTC
GTATCTATCTCATCCAACGATCAATCGCCTTCGTCGTTCAACTTTGTTAT
TGATGGATTGGTATGGTACAAGTATGCTGGATCTCTCGTTCGTTGGTTCC
TCTGCAAGAAACGAGTAACTGCTGCTGTACATGATGATGACAGCCATCGA
GATCAGGCGGAAAAACACTTTTACACACAAGCAAGCCACCGCGTTACAGC
AGTAATACATTCGCAAATTCAGAGTCAGTCGCTCTGTCGATGTTCGAGTC
TTCGAGTGCATCTCACGACATGGATATCGACATTTTGGACATGCACATGG
CTACAGCAGTACAGCAGTTTAGCATCACGTTGCATTGACTACAATATCGT
ATACGACGCAAGAGCTACGTACCCCATTTGGCATTGGGCGGTTGCCTTGA
ACACTATCCACACAGAGCAGACTAGTACTGAGTGTGTGCGGAACTTACCT
TGGTGTGACTGAACGCCCACTTGGAACCTCGTGGCCAATTATAGTCCTTT
AAACTTTAACCTTCTGAGTCTTCAGGCAGAGAAAATGATCATTAAATTGA
TTATCTCCTTTTGTACATTTATGGAGGGGATGACGACAAAACAGCCCGAA
ACCAACACCCGTAGGAATTGTACAGCATATGAGAGAACGTCCACACGCGT
AGGTGACCACTCATACCAACCAAAGCTCGCACACAGAGTGACTCAGATGC
TACAGCGCTTCAGCGGTCAACTCGCTCGGCCGTTTGTACACAAAATCCAC
TTCGCAGCAGAATGAACTGATACACTTGCACACGCACCTAGTCAGCACAT
ACAGGGCACACCCCACACAAATCTGCTGCTGCTACTACTACTCTTGTGCT
ATACATCAATGTCGTGCACCACAGCAGCGGTAGCTTGCTTGCTGCTCAGG
TGCGGAAAATTCACGCTTGTGAAAGAGGAGCTGTAGTGAGCCCGAAGGCC
CATGCTTGGGGTTGAGAGCGGGGAGGCAGGGAAGTACAGAAGTGCTCTAT
GGGCCTGAGGGTCTTCAAACACGAAAATGATCATTTGAAGATAAAACAAC
TTTATAATTTGTTATTATACTGAATAAAGAGCAGTGACAGGCACCGGTAA
ATATGGGACAGAACGCCTAGCGCGCTCTTCCCTTGATTTTGTTCCCACTC
AACGTTGATTATATTACCCTTCGACACGCCACGAGTCTGCCGCGGATGCT
CGTTACGACCTCTGTGTAGCTTCTACCCTGCAGAAGTACACATTTGGCTC
GAAGCTGTACTTCTATCTACCTCTCCCGCATGTTTTTTTTTCTGGTTCAG
AAAAAAAGAGCCAAACCCAGAGGGGTTAATGTGGCATCGTGCGTCGAAGC
ATGTGGAGGCTCACGGCCATTATCTGCTAAGTAGACTTGTATGGAACAAG
AAGAAGGATTGACTTAGGTTGCTTGAGAGTAGTGCTGACGTCACCGAGAA
TAGTAACTTGTCGGAAAGCAAGTGACTAGAGATTCTAGAATGAGGTGTCT
CAGGATTGAGAGCGGTAGTATACGGGAGAGACAAAGTGCAAGATCTAAGG
TAGGCGGTCGTACGACATCGATACAAGCTTGTTACGTCGGCGTCTGTCAA
AAATTCTTCTATTGAAAAGTTGTCCGGTCACTGGATGTTTGTCGTAAATC
CGAGAAAGAACTTGTACGATGATGCACTGAATTGCACGACATACGAAAAT
CTAGTTCAGTACTTCGATGGTATGAAGGTATTGATCGATGTGTTCCAGCA
GTGCTACTGCACCATACATATTTCGGACGATAAATATCGCAACAAGCTCT
TCACATCCTGTTTACCGTGCGGTACAGCAAGCAACAAACAGACACATACA
TTCACGGGTGGACACAAAGACAGGCATCATGGCGGGAGGGCAGCAGCAGC
AGAGTATCGACCTGTCGGTGTTGTCGCTGGAGCAGCTGAACCAGATGAAG
ACGCAGCACGAGGAGGACGTGCAGGCTCTCTCGGGGAATTTTGTGAAACT
CAGAGACGCTCAGGTAAATGCAGGTCTTCATGTGATTGAAGCGTCAATAA
TACTCCAGTTGTATTATGGACTACAGTATGGGCTTGCGATCTACCCACAC
GACTTAGACTAGGGACGGTCAGGGTGTGCTAATTGGAATCATCTACTGTG
CTGCCACGGACTCTCAGGTGTGTGAAACTTGTCACGCTCTTTTTTATTTT
TGCTTTGCACCCAGTTTTAGTTTCAGCGCGGCTTGTAACCCCGACGAGTG
TGCATCAACCAGTGCGGGTCGGTATTTCCAGCGCGCCTGAAATTTCTGTT
GGCCTGCGGGCTGCTGCTGCAAGTGCTGCCACACGCACTCACATCGCGTG
CGTTAGATTCTGCCTGATGCCAGTTGCGAACATCTTTCAGTGCTGAGTTC
AATTCAACGCTTCCCATTCGTCGAAAAATCTAAAATTCTGCGTCCTGCCT
TCCTTCTCAGGGTTGACCAGACCGACCGCTGTCGTACCTGCTACCTTTAC
CTGTTGTGTTTCGTTTGTCTTCATATCTCCCCCCTCCTTCCTGCATGATT
GCTGCACTACGCCAATGCATAATCACTATAACACACTCCCTATCCCGCTG
CTTCCACTTCCTCCTTGATCCGTGGTGACTTATTTTCGTCAGGCACGATT
TTCTGAATCGATATCCGCGGTGGAGGCGTTGGGAAGCAAAGTGGAAGGCA
AGGAGATTCTGGTGAGATGAGACGGGGTCCATTCTTGGACGCAGTTTCAT
ATTGGTGTGTGTAGTGGAATGGAGTTAAGATACACCAGCAGCCTAGCCTA
ACTAAGGGTGCTATTTCCGTTCTCAAGGCATGCTGTCCTTCGCTTCGTTG
GAATCACCATTCCTGCACGTCGGCGGCACTTAGCCCCGTTGAGTTTGGTC
GATATGATGGGTTGCTTTCGATGTTGGTTGATTGTGGTGCACCCTCTCCC
CCCCAACGTCTTGACTCTGACACTTCGGTTGCTGCTGTTGCTTATGCTGT
TGCTGCTTGCACTGCTGCTTCTTGTGCTCTTCCTTTGGAATGAAGGTGCC
GTTAACCCAGTCGCTGTACGTGCCGGGGCGTATTATTGATGCGGACAAGA
TGATGGTGGACGTGGGAACGGGCTACTACGTGCAGAAGGACCAGCAGAAA
ACGGCAGAGTTCCTGGGGAGGAAAGTGAGTGCGATGTAGTGCGATATGGT
TCGGTGTTGCGGAGTAGATGAGCTGCAGGTATTTGCATCTACAACAGCAC
AACTATGTAGTGCGCAGTGTTTTCCTTGTATAGTGTACATTGCAGCCCAA
CGGGGGCGAGGAGGTAGCACCGGCGCTTACATGACCTGACAGCCGCCATC
AAGCCGGAGGAGCACGGTATTAAAATAGAAGAGTGTGCACTCCGTGGCGG
CCCTCCTCCCTCCCTCTCTGCCCCTCGAGAGGCCGTCGTGGTTTCTCTTT
GCCTGCCTCACAAGCATGCCCTCTTGCCCCCTCCTGAGGTATCAATCTAC
CCCCCACCGACGAACATATTGTCTTTGCACCCTTTCTTTCGTGCTTGCCA
CGAAAACGAACGCCTCCGTTTGACAATGTCTCAGAAAGAGATAGTGACAA
CCAACTTGGAGTCTCTACGCAACGCGATCGATGTCAAGCGCAAGAACCTG
GAGGCCATTGTCGTGGTCATGAAAAGAAAGATTGGGGAAATCGAGAACAA
ACGAGCGGAATTCAAGAGTAGCCAAGAGGCCAAGGCATGATGAGAACACG
AGGAGCGCCGCAGACTCCAAAATGTTGGGGTGGCGTCAGACATCGCAGGG
TTTAATTGAAATACTTAGGTTACGGGTGGCTGCCGGTGTACCTTACCTTA
CGAACTCTGGTGCCTGGTCGGTTTGGGTCACGAGAAGATGCCCCTTGACT
TCACCCGGATCGTTGTGACTAGCGAACGATCTTGCTCCCGCATGTGGAAT
ATATCTATATCGCAGCGAGTGGGAGCAGCAGTGCAGTGTAGCGTCGCCGT
ACCCTCCTAGGGCATGGTTTTGCGTGCTACAATAGCTCGCCCAAAGACCG
CCAGTTTCGGGTACAGATCATACTTGTAGCTTCGAGTGCTGGGAGGAGGG
ACGGAGAAAGCCACACAGAATGTGGAGGTGTGCGTCTCCATGTGTCGGAT
TCTTGTACAGTTTTTCAACGTGCTACTACATCAGCGATTCTAAACTAATG
TTAACCTGTATGCATGCGTTAGATGCGGCAGGCGTCGGTCATATTTCACG
ATGAAGGTTACGGTCAACTACTGTAGCCAGCTAGGCCAGCATCGTGATGG
CCGCTCATGATATACAGCAGATACCCGGATTCTCGTCGTGTTCGCGACAG
GCATCAAGTATGATCAAGAGGGTGACGTTTCGTGCGGGCCATCTCCCCGT
CGAAGTGTATGTTGTATGAGTGGAGAATATGTTAGGGTGGAGTTTTTCGT
TGTGTACACGCTGCCGATGCACCAAAGTACGTCGGTGTGGGATCTCAGGG
GGGTCGAGATGTAAAAATAGAAGCCTGCTAGCTCCTTATTTTACTCCAAT
TGCCCGGAACTCGTACGACGTTGTGATTCGCAGTAGGAGAAGAAAACCGA
TTCGACTAACGACACACATTCGATATGGGAAGAAAATGGTCCTCTGCCGA
GCAGCCGAGCCTGTCCT
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Coding sequence (CDS) from alignment at P-lacustris_contig1003:22354..27170-

>mRNA_P-lacustris_contig1003.139.1 ID=mRNA_P-lacustris_contig1003.139.1|Name=mRNA_P-lacustris_contig1003.139.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=978bp|location=Sequence derived from alignment at P-lacustris_contig1003:22354..27170- (Pleurocladia lacustris SAG_25_93)
ATGGCGGGAGGGCAGCAGCAGCAGAGTATCGACCTGTCGGTGTTGTCGCT
GGAGCAGCTGAACCAGATGAAGACGCAGCACGAGGAGGACGTGCAGGCTC
TCTCGGGGAATTTTGTGAAACTCAGAGACGCTCAGATGGCGGGAGGGCAG
CAGCAGCAGAGTATCGACCTGTCGGTGTTGTCGCTGGAGCAGCTGAACCA
GATGAAGACGCAGCACGAGGAGGACGTGCAGGCTCTCTCGGGGAATTTTG
TGAAACTCAGAGACGCTCAGGCACGATTTTCTGAATCGATATCCGCGGTG
GAGGCGTTGGGAAGCAAAGTGGAAGGCAAGGAGATTCTGGCACGATTTTC
TGAATCGATATCCGCGGTGGAGGCGTTGGGAAGCAAAGTGGAAGGCAAGG
AGATTCTGGTGCCGTTAACCCAGTCGCTGTACGTGCCGGGGCGTATTATT
GATGCGGACAAGATGATGGTGGACGTGGGAACGGGCTACTACGTGCAGAA
GGACCAGCAGAAAACGGCAGAGTTCCTGGGGAGGAAAGTGCCGTTAACCC
AGTCGCTGTACGTGCCGGGGCGTATTATTGATGCGGACAAGATGATGGTG
GACGTGGGAACGGGCTACTACGTGCAGAAGGACCAGCAGAAAACGGCAGA
GTTCCTGGGGAGGAAAAAAGAGATAGTGACAACCAACTTGGAGTCTCTAC
GCAACGCGATCGATGTCAAGCGCAAGAACCTGGAGGCCATTGTCGTGGTC
ATGAAAAGAAAGATTGGGGAAATCGAGAACAAACGAGCGGAATTCAAGAG
TAGCCAAGAGGCCAAGGCATGAAAAGAGATAGTGACAACCAACTTGGAGT
CTCTACGCAACGCGATCGATGTCAAGCGCAAGAACCTGGAGGCCATTGTC
GTGGTCATGAAAAGAAAGATTGGGGAAATCGAGAACAAACGAGCGGAATT
CAAGAGTAGCCAAGAGGCCAAGGCATGA
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