mRNA_P-lacustris_contig1003.145.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1003.145.1
Unique NamemRNA_P-lacustris_contig1003.145.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1003.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1003contigP-lacustris_contig1003:76620..76895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size266
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1003.145.1prot_P-lacustris_contig1003.145.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1003 76630..76822 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.9518108-UTR-P-lacustris_contig1003:76619..766291622815269.9518108-UTR-P-lacustris_contig1003:76619..76629Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 76620..76629 +
1693493440.9239287-UTR-P-lacustris_contig1003:76619..766291693493440.9239287-UTR-P-lacustris_contig1003:76619..76629Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 76620..76629 +
1622815269.9895573-UTR-P-lacustris_contig1003:76822..768951622815269.9895573-UTR-P-lacustris_contig1003:76822..76895Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 76823..76895 +
1693493440.9609475-UTR-P-lacustris_contig1003:76822..768951693493440.9609475-UTR-P-lacustris_contig1003:76822..76895Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 76823..76895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.9645612-CDS-P-lacustris_contig1003:76629..766901622815269.9645612-CDS-P-lacustris_contig1003:76629..76690Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 76630..76690 +
1693493440.9347672-CDS-P-lacustris_contig1003:76629..766901693493440.9347672-CDS-P-lacustris_contig1003:76629..76690Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 76630..76690 +
1622815269.9762661-CDS-P-lacustris_contig1003:76700..768221622815269.9762661-CDS-P-lacustris_contig1003:76700..76822Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 76701..76822 +
1693493440.9449873-CDS-P-lacustris_contig1003:76700..768221693493440.9449873-CDS-P-lacustris_contig1003:76700..76822Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 76701..76822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1003.145.1

>prot_P-lacustris_contig1003.145.1 ID=prot_P-lacustris_contig1003.145.1|Name=mRNA_P-lacustris_contig1003.145.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=61bp
MTMGMAKGMVWCSRSAALALSAAAAAGVATCHEEGRWVWRRVWRRIWFDA
AGTKQWRCAV*
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mRNA from alignment at P-lacustris_contig1003:76620..76895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1003.145.1 ID=mRNA_P-lacustris_contig1003.145.1|Name=mRNA_P-lacustris_contig1003.145.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=276bp|location=Sequence derived from alignment at P-lacustris_contig1003:76620..76895+ (Pleurocladia lacustris SAG_25_93)
GGCGACGGTTATGACGATGGGTATGGCGAAGGGTATGGTTTGGTGCAGCC
GGAGTGCAGCATTGGCGTTGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGG
AGTGGCAACATGTCATGAGGAGGGGCGATGGGTATGGCGAAGGGTATGGC
GAAGGATATGGTTTGATGCAGCCGGAACGAAGCAGTGGCGTTGTGCAGTC
TGACAGCAGCGATCGCATGCTTGGGGGGGAAGGAAGGATCGGAAGTTCTG
GGAGCAGGGAGGCAACCGGTGGGCTG
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Coding sequence (CDS) from alignment at P-lacustris_contig1003:76620..76895+

>mRNA_P-lacustris_contig1003.145.1 ID=mRNA_P-lacustris_contig1003.145.1|Name=mRNA_P-lacustris_contig1003.145.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=366bp|location=Sequence derived from alignment at P-lacustris_contig1003:76620..76895+ (Pleurocladia lacustris SAG_25_93)
ATGACGATGGGTATGGCGAAGGGTATGGTTTGGTGCAGCCGGAGTGCAGC
ATTGGCGTTGTATGACGATGGGTATGGCGAAGGGTATGGTTTGGTGCAGC
CGGAGTGCAGCATTGGCGTTGTCAGCAGCAGCAGCAGCAGGAGTGGCAAC
ATGTCATGAGGAGGGGCGATGGGTATGGCGAAGGGTATGGCGAAGGATAT
GGTTTGATGCAGCCGGAACGAAGCAGTGGCGTTGTGCAGTCTGACAGCAG
CAGCAGCAGCAGGAGTGGCAACATGTCATGAGGAGGGGCGATGGGTATGG
CGAAGGGTATGGCGAAGGATATGGTTTGATGCAGCCGGAACGAAGCAGTG
GCGTTGTGCAGTCTGA
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