mRNA_P-lacustris_contig1000.121.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1000.121.1
Unique NamemRNA_P-lacustris_contig1000.121.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1000.121.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 8.560e-8
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 2 
Query:    2 KVLRDEFLPIFDGESHVSKTGANHHSGSSSPRAALCQRNPLLKCAALFWLGQ 157
            K+LRDE LP+FDGE+    T     S  SSP     QRNP L+CA LFWLGQ
Sbjct: 2018 KLLRDELLPVFDGETGDGPTQGQQRS--SSP----LQRNPFLECATLFWLGQ 2063
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BLAST of mRNA_P-lacustris_contig1000.121.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 3.000e-7
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 2 
Query:    2 KVLRDEFLPIFDGESHVSKTGANHHSGSSSPRAALCQRNPLLKCAALFWLGQ 157
            K+LRDE LP+FDGE+    T     S      +   QRNP L+CA LFWLGQ
Sbjct: 2110 KLLRDELLPVFDGETEHGPTQGQQRS------SFRLQRNPFLECATLFWLGQ 2155
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1000.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G824_ECTSI8.560e-855.77PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K928_9PHAE3.000e-750.00PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1000contigP-lacustris_contig1000:47195..47713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size171
Cds size168
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1000.121.1prot_P-lacustris_contig1000.121.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1000 47195..47711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.709786-CDS-P-lacustris_contig1000:47194..472561622815268.709786-CDS-P-lacustris_contig1000:47194..47256Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 47195..47256 +
1693493440.0842173-CDS-P-lacustris_contig1000:47194..472561693493440.0842173-CDS-P-lacustris_contig1000:47194..47256Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 47195..47256 +
1622815268.7215078-CDS-P-lacustris_contig1000:47588..476121622815268.7215078-CDS-P-lacustris_contig1000:47588..47612Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 47589..47612 +
1693493440.0935261-CDS-P-lacustris_contig1000:47588..476121693493440.0935261-CDS-P-lacustris_contig1000:47588..47612Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 47589..47612 +
1622815268.732178-CDS-P-lacustris_contig1000:47629..477111622815268.732178-CDS-P-lacustris_contig1000:47629..47711Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 47630..47711 +
1693493440.101422-CDS-P-lacustris_contig1000:47629..477111693493440.101422-CDS-P-lacustris_contig1000:47629..47711Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 47630..47711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1000.121.1

>prot_P-lacustris_contig1000.121.1 ID=prot_P-lacustris_contig1000.121.1|Name=mRNA_P-lacustris_contig1000.121.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=56bp
EGASGRVLADFRRRESRFQDRREPPQRQQLTPSRPLPAQPVTKVRRPVLA
GTGLGL
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mRNA from alignment at P-lacustris_contig1000:47195..47713+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1000.121.1 ID=mRNA_P-lacustris_contig1000.121.1|Name=mRNA_P-lacustris_contig1000.121.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=519bp|location=Sequence derived from alignment at P-lacustris_contig1000:47195..47713+ (Pleurocladia lacustris SAG_25_93)
GAAGGTGCTTCGGGACGAGTTCTTGCCGATTTTCGACGGCGAGAGTCACG
TTTCCAAGACAGGTGAGAGGTGGTTCACAGAGAGGAACACGGTAGACTCG
CCGGTGTTTGTTGACTGAAACCACGCAACGGGCACACACAGAGAGACAAG
AGAGAGAGAGAGAGAGACATAGACGGGCATGCAAGAGACCGATACATTTC
TCGCGTATTTCGGTCGGTTCGTTTTGTTGTAGGCGACACCCCCAACGAAA
TAGCATCCGTGGACAAGGCTCTGCTTCCAGCCTTTTCTTTTCTCTCGTCT
ATTGCGTGTCTGTTCTACCGTCGAAAAGCATATCATCAAATGCCTGATAT
CGTCGTCCGGTCCCCACTTGCCTAATCTAATCTCACCCTTGCAGGCGCGA
ACCACCACAGCGGCAGCAGTCGCTTGCGGCGGCAGGCTCACCCCGAGCCG
CCCTCTGCCAGCGCAACCCGTTACTAAAGTGCGCCGCCCTGTTCTGGCTG
GGACAGGGTTAGGGTTAGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1000:47195..47713+

>mRNA_P-lacustris_contig1000.121.1 ID=mRNA_P-lacustris_contig1000.121.1|Name=mRNA_P-lacustris_contig1000.121.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=336bp|location=Sequence derived from alignment at P-lacustris_contig1000:47195..47713+ (Pleurocladia lacustris SAG_25_93)
GAAGGTGCTTCGGGACGAGTTCTTGCCGATTTTCGACGGCGAGAGTCACG
TTTCCAAGACAGGAAGGTGCTTCGGGACGAGTTCTTGCCGATTTTCGACG
GCGAGAGTCACGTTTCCAAGACAGGCGCGAACCACCACAGCGGCAGCAGC
GCGAACCACCACAGCGGCAGCAGCTCACCCCGAGCCGCCCTCTGCCAGCG
CAACCCGTTACTAAAGTGCGCCGCCCTGTTCTGGCTGGGACAGGGTTAGG
GTTAGCTCACCCCGAGCCGCCCTCTGCCAGCGCAACCCGTTACTAAAGTG
CGCCGCCCTGTTCTGGCTGGGACAGGGTTAGGGTTA
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