mRNA_P-lacustris_contig1127.1028.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1127.1028.1
Unique NamemRNA_P-lacustris_contig1127.1028.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1127.1028.1 vs. uniprot
Match: D7G3P0_ECTSI (Integrins alpha chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P0_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 6.710e-13
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 ARRRVIKS-CVCSTLLCPFSAAVGTFESSFNVSAFARIYNAGESNEDWLGYSCASIG 168
            ARR VI++    S LLCP +AA GTF+S+ N S+  RIYNA E NEDWLGYSCASIG
Sbjct:    9 ARRGVIEAGFFLSALLCPLAAAAGTFQSNVNASSSPRIYNASEMNEDWLGYSCASIG 65
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BLAST of mRNA_P-lacustris_contig1127.1028.1 vs. uniprot
Match: D7G550_ECTSI (Integrin alpha chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G550_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.420e-12
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 ARRRVIKS-CVCSTLLCPFSAAVGTFESSFNVSAFARIYNAGESNEDWLGYSCASIG 168
            ARR V+++    S LLCP +AA GTF+S+ N S+  RIYNA E NEDWLGYSCASIG
Sbjct:    9 ARRGVVEAGFFLSALLCPLAAAAGTFQSNVNASSSPRIYNASEMNEDWLGYSCASIG 65
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BLAST of mRNA_P-lacustris_contig1127.1028.1 vs. uniprot
Match: A0A6H5L9N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9N8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.470e-12
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 ARRRVIKS-CVCSTLLCPFSAAVGTFESSFNVSAFARIYNAGESNEDWLGYSCASIG 168
            ARR VI++    S LLCP +AA GTF S+ N S+  RIYNA E NEDWLGYSCASIG
Sbjct:    9 ARRGVIEAGFFLSALLCPLAAAAGTFRSNVNASSSPRIYNASEINEDWLGYSCASIG 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1127.1028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3P0_ECTSI6.710e-1364.91Integrins alpha chain n=1 Tax=Ectocarpus siliculos... [more]
D7G550_ECTSI1.420e-1263.16Integrin alpha chain n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L9N8_9PHAE2.470e-1264.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1127contigP-lacustris_contig1127:60598..60780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue6.3e-11
Seed eggNOG ortholog2880.D7G3P0
KEGG koko:K06484
KEGG Pathwayko04145,ko04151,ko04510,ko04512,ko04640,ko04810,ko05100,ko05131,ko05133,ko05165,ko05205,ko05206,ko05410,ko05412,ko05414,map04145,map04151,map04510,map04512,map04640,map04810,map05100,map05131,map05133,map05165,map05205,map05206,map05410,map05412,map05414
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.integrin-mediated signaling pathway
EggNOG OGsKOG3637@1,KOG3637@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090,ko04147,ko04516
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.4047713-CDS-P-lacustris_contig1127:60597..607801622815429.4047713-CDS-P-lacustris_contig1127:60597..60780Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1127 60598..60780 -
1693493536.2821574-CDS-P-lacustris_contig1127:60597..607801693493536.2821574-CDS-P-lacustris_contig1127:60597..60780Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1127 60598..60780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1127.1028.1prot_P-lacustris_contig1127.1028.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1127 60598..60780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1127.1028.1

>prot_P-lacustris_contig1127.1028.1 ID=prot_P-lacustris_contig1127.1028.1|Name=mRNA_P-lacustris_contig1127.1028.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=61bp
ARRRVIKSCVCSTLLCPFSAAVGTFESSFNVSAFARIYNAGESNEDWLGY
SCASIGGEAA*
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mRNA from alignment at P-lacustris_contig1127:60598..60780-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1127.1028.1 ID=mRNA_P-lacustris_contig1127.1028.1|Name=mRNA_P-lacustris_contig1127.1028.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=183bp|location=Sequence derived from alignment at P-lacustris_contig1127:60598..60780- (Pleurocladia lacustris SAG_25_93)
GCACGTCGAAGGGTAATCAAATCTTGCGTATGCTCAACACTGCTGTGTCC
ATTCTCAGCCGCTGTCGGAACCTTCGAATCAAGCTTCAATGTGTCGGCCT
TCGCTCGGATCTACAATGCTGGCGAGAGCAATGAAGATTGGCTGGGATAC
TCATGCGCCTCCATCGGCGGTGAGGCCGCATAA
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Coding sequence (CDS) from alignment at P-lacustris_contig1127:60598..60780-

>mRNA_P-lacustris_contig1127.1028.1 ID=mRNA_P-lacustris_contig1127.1028.1|Name=mRNA_P-lacustris_contig1127.1028.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=366bp|location=Sequence derived from alignment at P-lacustris_contig1127:60598..60780- (Pleurocladia lacustris SAG_25_93)
GCACGTCGAAGGGTAATCAAATCTTGCGTATGCTCAACACTGCTGTGTCC
ATTCTCAGCCGCTGTCGGAACCTTCGAATCAAGCTTCAATGTGTCGGCCT
TCGCTCGGATCTACAATGCTGGCGAGAGCAATGAAGATTGGCTGGGATAC
TCATGCGCCTCCATCGGCGGTGAGGCCGCATAAGCACGTCGAAGGGTAAT
CAAATCTTGCGTATGCTCAACACTGCTGTGTCCATTCTCAGCCGCTGTCG
GAACCTTCGAATCAAGCTTCAATGTGTCGGCCTTCGCTCGGATCTACAAT
GCTGGCGAGAGCAATGAAGATTGGCTGGGATACTCATGCGCCTCCATCGG
CGGTGAGGCCGCATAA
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