mRNA_P-lacustris_contig1127.1026.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1127.1026.1
Unique NamemRNA_P-lacustris_contig1127.1026.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1127.1026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1127contigP-lacustris_contig1127:31107..33615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size237
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1127.1026.1prot_P-lacustris_contig1127.1026.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1127 31107..33570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.6674397-CDS-P-lacustris_contig1127:31106..312731622815428.6674397-CDS-P-lacustris_contig1127:31106..31273Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1127 31107..31273 +
1693493535.84665-CDS-P-lacustris_contig1127:31106..312731693493535.84665-CDS-P-lacustris_contig1127:31106..31273Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1127 31107..31273 +
1622815428.6858506-CDS-P-lacustris_contig1127:33500..335701622815428.6858506-CDS-P-lacustris_contig1127:33500..33570Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1127 33501..33570 +
1693493535.8556335-CDS-P-lacustris_contig1127:33500..335701693493535.8556335-CDS-P-lacustris_contig1127:33500..33570Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1127 33501..33570 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.6961296-UTR-P-lacustris_contig1127:33570..336151622815428.6961296-UTR-P-lacustris_contig1127:33570..33615Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1127 33571..33615 +
1693493535.8645825-UTR-P-lacustris_contig1127:33570..336151693493535.8645825-UTR-P-lacustris_contig1127:33570..33615Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1127 33571..33615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1127.1026.1

>prot_P-lacustris_contig1127.1026.1 ID=prot_P-lacustris_contig1127.1026.1|Name=mRNA_P-lacustris_contig1127.1026.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=79bp
REGNFQDTSRADAHTLTCVTREVSTQEPCRDVKLRGDCCTKTRNPRGEGS
VQFSLGPTDAFLARRKQEETQESVAKLL*
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mRNA from alignment at P-lacustris_contig1127:31107..33615+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1127.1026.1 ID=mRNA_P-lacustris_contig1127.1026.1|Name=mRNA_P-lacustris_contig1127.1026.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2509bp|location=Sequence derived from alignment at P-lacustris_contig1127:31107..33615+ (Pleurocladia lacustris SAG_25_93)
AGAGAGGGAAACTTTCAGGACACCTCCCGGGCGGACGCGCACACCCTCAC
GTGCGTGACACGCGAGGTCTCGACACAAGAGCCTTGCCGTGACGTGAAAC
TTCGTGGGGACTGCTGCACCAAAACAAGGAATCCTCGAGGCGAGGGAAGC
GTACAATTTTCTCTTGGGTGAGTCTGAAACACAAAATGACGCTGTCGCAC
ACAACACGGGGACAGCTGCCTCTTGGTGGACTACCCTCCGTGCCAGCGGC
CCATGCTCACCTCCTAGGCCTGGTTGTTACGGCAATTCTCCGGCTAGGTA
TATCTACATGTCTTGCAGTGTGTCCGGAAACAATTCGATTCCAAATCCGT
TTGCTGTGCTTGAAGCAAAGTCAAATCTTCGGGGGCAGACTTGCCCTGTG
TTTGGCACGCTTTGTGTTTTACATTGATAGATTAGAATTTTAGGCAGGTA
GTGACGTATAAAGAGGAGGTCTAGGTCCAGCCTTCGTCAATAGAGTAGAT
GGCGAGGGTACGTGTGGATGGTAGGTGCAAGTGCTGTGGGACGGCGATGT
AGAGGCAATGTTCTTGTGGCGGAAGACACAAATGTAGAAAAGGTCCAATT
GTTAATTAGACTGAATGAGAGAGGACCTCTCATCAGGATTGTCGGAACTG
TTATCCGGAAATTGAAGTAAAAAAGCTAAAATTGAAATTGGACTCTGATT
GGTCGCAGAATCGCAATCTTGGAACCACGCACTTTAATATTCCGATATCC
AAATAAGTCCCTGGAGACTTTCTAAATTAAAGTTAAAGTTAAAGTCGCCA
AGTGTGGTGAACATGGAAGGCTTGCTTGCTGTGGTTGAACGTATGCCGCG
GGTCCATTTCGCCGCGTGGAAGATCAGAGGATCAGCTACAATCCACCCAG
TCTCGACAGCTCAACGGCAAGCCCAAAACCATGCCGCGTCGTTCGGTTGT
CGAAGAGAAATCGCCGATCGTCACAACTGGTGACGAGGCGGATAAACGAC
AGCCGTTTGGTCTTTTTTGCGATGTTGAGGGGTAGTTGCAATGATTTTTC
CCGACAGACACGAGACCCCACGGCCCCTAACCTTTGGCGTGCGAGATGGA
CCAACTCTCCACCTCTCTAGGGATAGCCTTGTTGTTGCCGTTGCTTCCTC
CTTGGCAAAGTTATGGCCGGAAAACTAAACAGATGTGTGTTCAAAAACAT
CCCGAATTTGAGGCAACGGCTCTCGCGTTGATGTTGAAGGGTAGTTGCAA
TGATTTTTCCCGACATGCACAAGACTCCACGGCCCCTAACCTTGGGCGTG
CGAGATGGACCAACTCTCCACCTCTCTGGGGATGGCCTTGTTATTCCCGT
TACTTCCTCCTTCGCAAAGTTATGGCCCGAAAACTAAACCGACGTGTGTA
CAGAAATTGCGAGCTTCAACCGCGCTCTCTGGGATGACCACCGGAAGGTT
TGTACCGCTTCGGGCGTCATCGCTGCCAAACACTCCCGTACAGCTCCGTC
TCACTCTTTCCTGTTTACATGGGATTTTAATTTTTGGTGGTTCTGGGGGA
AAACGCTTTTTTATTTATTTTTTTATTTTAGTGTCAATTTTCGGGATTTT
CGGCCGCTCCGTTAATACGACCCCTAACTTACGTTCCAAGCCCTATATAT
CCACCTCTTTCTTATTACCGCTGTGAATCTTCTCCACTACTGCTGTGTAC
TGACGCATTTGCTCCAACGGATCCACTAAATCGCATTCTGGGACGAGTCC
GTACTGCTGTATGGCTCCTTAGCTGTCTCAGTCCAAGCTATATCCGGTGA
ACTTCCACAAATCTCAACGTCCAATATCTGTCCTACAGAAGATCGCACTA
AACCCGATTCTTGTAACCTTTCAGCCCTAATCACACTGAAACCCAATGGT
AGGAGTCTGTATAGCAACACTCAACTCCAGTACACCCTTCTACACTAGGA
GTAAGTACGGATGCCAAATTGCACCACAATAGATGCTTAAGCGTATGCGT
ATGTGTCGGACAAAGACACGTTTGTGGTTAGGAATGACACAAACGAATCC
TTTCGCGTTACGGATTGGTATGCATACGATGGGTCATTCATGAGCATGTA
AGTTTCATTCACTCCTATTGTATTGCGTTTTTTTTTGGACACACAGTCAT
CTTCCATAGAGGTGACCTGCAATAGCGCAGGCTCGCGCCGGTCACACGCT
GTGTGTGCTGTTTTTGTGCACCTCGTTTTTTCCCGCTGCCGTGGCGGGTC
ATCTGCACCCTGCTTTCGCACTCTGCTGCTGTCGAGGAATGCATTGCCTC
ACTGCGATTGTTGCACTACAGCAGAACATGTACTCCGCAAAAACAATTGC
CTTGTACATGCATACGTTTTTTTGCGCATGTTTCTTTCTCACAGGCCCAC
TGACGCGTTTTTGGCGAGGAGAAAGCAAGAGGAGACGCAAGAGAGCGTGG
CAAAGCTGCTGTGAGTTGCTGGCCTGCTGCACCAGCACCGTGGTAGTGCT
CGAAGGAGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1127:31107..33615+

>mRNA_P-lacustris_contig1127.1026.1 ID=mRNA_P-lacustris_contig1127.1026.1|Name=mRNA_P-lacustris_contig1127.1026.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=474bp|location=Sequence derived from alignment at P-lacustris_contig1127:31107..33615+ (Pleurocladia lacustris SAG_25_93)
AGAGAGGGAAACTTTCAGGACACCTCCCGGGCGGACGCGCACACCCTCAC
GTGCGTGACACGCGAGGTCTCGACACAAGAGCCTTGCCGTGACGTGAAAC
TTCGTGGGGACTGCTGCACCAAAACAAGGAATCCTCGAGGCGAGGGAAGC
GTACAATTTTCTCTTGGAGAGAGGGAAACTTTCAGGACACCTCCCGGGCG
GACGCGCACACCCTCACGTGCGTGACACGCGAGGTCTCGACACAAGAGCC
TTGCCGTGACGTGAAACTTCGTGGGGACTGCTGCACCAAAACAAGGAATC
CTCGAGGCGAGGGAAGCGTACAATTTTCTCTTGGGCCCACTGACGCGTTT
TTGGCGAGGAGAAAGCAAGAGGAGACGCAAGAGAGCGTGGCAAAGCTGCT
GTGAGCCCACTGACGCGTTTTTGGCGAGGAGAAAGCAAGAGGAGACGCAA
GAGAGCGTGGCAAAGCTGCTGTGA
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