mRNA_P-lacustris_contig1113.935.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1113.935.1
Unique NamemRNA_P-lacustris_contig1113.935.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1113.935.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.090e-20
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   10 LEHNHPVEKDAVDEVRRQNKPLDTPTKEACEALTD--AGFKPAVQSKMLQALTGERPNPRAIRN 195
            L HNHPV K  VDEVRRQ KPLDTPTK+AC  LT   AGFKPAVQ KM+QALTGERPN RAI++
Sbjct:  272 LNHNHPVNKGVVDEVRRQTKPLDTPTKDACVKLTGKYAGFKPAVQGKMIQALTGERPNARAIQD 335
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BLAST of mRNA_P-lacustris_contig1113.935.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.440e-5
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:  112 DAGFKPAVQSKMLQALTGERPNPRAIRN 195
            DAGFKPAVQ KM++ALTGERPN RAI+N
Sbjct:   24 DAGFKPAVQGKMIEALTGERPNTRAIQN 51
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1113.935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU34_9PHAE4.090e-2075.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE1.440e-582.14MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1113contigP-lacustris_contig1113:3728..4169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size196
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815410.4984853-CDS-P-lacustris_contig1113:3727..38101622815410.4984853-CDS-P-lacustris_contig1113:3727..3810Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1113 3728..3810 -
1693493527.5376813-CDS-P-lacustris_contig1113:3727..38101693493527.5376813-CDS-P-lacustris_contig1113:3727..3810Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1113 3728..3810 -
1622815410.5092158-CDS-P-lacustris_contig1113:4057..41691622815410.5092158-CDS-P-lacustris_contig1113:4057..4169Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1113 4058..4169 -
1693493527.547692-CDS-P-lacustris_contig1113:4057..41691693493527.547692-CDS-P-lacustris_contig1113:4057..4169Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1113 4058..4169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1113.935.1prot_P-lacustris_contig1113.935.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1113 3728..4169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1113.935.1

>prot_P-lacustris_contig1113.935.1 ID=prot_P-lacustris_contig1113.935.1|Name=mRNA_P-lacustris_contig1113.935.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=65bp
MNNLEHNHPVEKDAVDEVRRQNKPLDTPTKEACEALTDAGFKPAVQSKML
QALTGERPNPRAIRN
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mRNA from alignment at P-lacustris_contig1113:3728..4169-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1113.935.1 ID=mRNA_P-lacustris_contig1113.935.1|Name=mRNA_P-lacustris_contig1113.935.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=442bp|location=Sequence derived from alignment at P-lacustris_contig1113:3728..4169- (Pleurocladia lacustris SAG_25_93)
ATGAACAACTTGGAGCACAACCACCCGGTGGAGAAGGATGCTGTTGATGA
AGTTCGTCGGCAGAATAAGCCTTTGGACACCCCGACGAAGGAAGCGTGTG
AGGCGCTCACAGGCGAGTGTTGAGGCAGGATGTGTGTGTTTTGTGTTCCT
GGTACTTTTGTATAGGCGATACATGTGCAAGTACTACGTGTTAGGATCGG
ACGAGTGTTAACTTCTGGTGTGGAGAGGGAGACGCAGCACGAAAGTAACA
GCAGTGTTGCTATAGTGCATTGCTGTGTTGAGCACAACTTACGCTTTGCT
GCTCATGACCGTGCAGCATGAACCCATTTTCGTTTTGTTTGGTTGTTGTT
TCATAACAGATGCGGGCTTCAAGCCAGCGGTTCAAAGCAAGATGCTCCAA
GCTCTCACCGGTGAACGCCCAAACCCCCGTGCCATCCGGAAT
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Coding sequence (CDS) from alignment at P-lacustris_contig1113:3728..4169-

>mRNA_P-lacustris_contig1113.935.1 ID=mRNA_P-lacustris_contig1113.935.1|Name=mRNA_P-lacustris_contig1113.935.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=390bp|location=Sequence derived from alignment at P-lacustris_contig1113:3728..4169- (Pleurocladia lacustris SAG_25_93)
ATGAACAACTTGGAGCACAACCACCCGGTGGAGAAGGATGCTGTTGATGA
AGTTCGTCGGCAGAATAAGCCTTTGGACACCCCGACGAAGGAAGCGTGTG
AGGCGCTCACAGATGAACAACTTGGAGCACAACCACCCGGTGGAGAAGGA
TGCTGTTGATGAAGTTCGTCGGCAGAATAAGCCTTTGGACACCCCGACGA
AGGAAGCGTGTGAGGCGCTCACAGATGCGGGCTTCAAGCCAGCGGTTCAA
AGCAAGATGCTCCAAGCTCTCACCGGTGAACGCCCAAACCCCCGTGCCAT
CCGGAATATGCGGGCTTCAAGCCAGCGGTTCAAAGCAAGATGCTCCAAGC
TCTCACCGGTGAACGCCCAAACCCCCGTGCCATCCGGAAT
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