mRNA_P-lacustris_contig11.828.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig11.828.1
Unique NamemRNA_P-lacustris_contig11.828.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig11.828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig11contigP-lacustris_contig11:386233..386716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size484
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig11.828.1prot_P-lacustris_contig11.828.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig11 386252..386641 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.5763228-UTR-P-lacustris_contig11:386232..3862511622815376.5763228-UTR-P-lacustris_contig11:386232..386251Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig11 386233..386251 +
1693493509.2083025-UTR-P-lacustris_contig11:386232..3862511693493509.2083025-UTR-P-lacustris_contig11:386232..386251Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig11 386233..386251 +
1622815376.5989149-UTR-P-lacustris_contig11:386641..3867161622815376.5989149-UTR-P-lacustris_contig11:386641..386716Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig11 386642..386716 +
1693493509.23206-UTR-P-lacustris_contig11:386641..3867161693493509.23206-UTR-P-lacustris_contig11:386641..386716Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig11 386642..386716 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.5869405-CDS-P-lacustris_contig11:386251..3866411622815376.5869405-CDS-P-lacustris_contig11:386251..386641Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 386252..386641 +
1693493509.2189248-CDS-P-lacustris_contig11:386251..3866411693493509.2189248-CDS-P-lacustris_contig11:386251..386641Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 386252..386641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig11.828.1

>prot_P-lacustris_contig11.828.1 ID=prot_P-lacustris_contig11.828.1|Name=mRNA_P-lacustris_contig11.828.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=130bp
MLGSPMSSTWWWIVSELCSKGVGAYFSFLPGDHWHLVRHLDRFPSKAITI
TTNKEIGLVVDGQSMTCKSMYEAREPRDMDKHVHGPECNVVSHDKSSCKF
ALRNITSSARYAVFLSAVQTGDKIVITFC*
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mRNA from alignment at P-lacustris_contig11:386233..386716+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig11.828.1 ID=mRNA_P-lacustris_contig11.828.1|Name=mRNA_P-lacustris_contig11.828.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=484bp|location=Sequence derived from alignment at P-lacustris_contig11:386233..386716+ (Pleurocladia lacustris SAG_25_93)
CCCGTGCCTCTGGCCATCTATGTTGGGCTCGCCAATGTCTTCGACTTGGT
GGTGGATCGTTTCTGAGCTTTGTTCGAAAGGTGTTGGTGCCTACTTTTCT
TTTTTGCCTGGCGATCACTGGCACCTGGTTCGTCATTTGGATCGGTTTCC
TTCAAAAGCAATCACCATCACGACCAACAAGGAAATAGGGTTGGTTGTCG
ATGGACAAAGCATGACATGCAAATCCATGTACGAAGCCCGTGAGCCACGA
GACATGGACAAACACGTGCACGGCCCTGAATGCAACGTCGTGTCACATGA
TAAGAGCTCATGCAAGTTTGCGCTCCGAAACATAACCTCCTCCGCTCGCT
ATGCAGTATTCCTGAGCGCAGTCCAAACCGGTGACAAAATTGTAATCACC
TTCTGCTGACGGACTAACTTTGCTATTTCCGAGTTCGCTTCGAGAGACGC
CTCCTCCTCCTCAGCCGACGCTGCCTCCACCGCT
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Coding sequence (CDS) from alignment at P-lacustris_contig11:386233..386716+

>mRNA_P-lacustris_contig11.828.1 ID=mRNA_P-lacustris_contig11.828.1|Name=mRNA_P-lacustris_contig11.828.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=780bp|location=Sequence derived from alignment at P-lacustris_contig11:386233..386716+ (Pleurocladia lacustris SAG_25_93)
ATGTTGGGCTCGCCAATGTCTTCGACTTGGTGGTGGATCGTTTCTGAGCT
TTGTTCGAAAGGTGTTGGTGCCTACTTTTCTTTTTTGCCTGGCGATCACT
GGCACCTGGTTCGTCATTTGGATCGGTTTCCTTCAAAAGCAATCACCATC
ACGACCAACAAGGAAATAGGGTTGGTTGTCGATGGACAAAGCATGACATG
CAAATCCATGTACGAAGCCCGTGAGCCACGAGACATGGACAAACACGTGC
ACGGCCCTGAATGCAACGTCGTGTCACATGATAAGAGCTCATGCAAGTTT
GCGCTCCGAAACATAACCTCCTCCGCTCGCTATGCAGTATTCCTGAGCGC
AGTCCAAACCGGTGACAAAATTGTAATCACCTTCTGCTGAATGTTGGGCT
CGCCAATGTCTTCGACTTGGTGGTGGATCGTTTCTGAGCTTTGTTCGAAA
GGTGTTGGTGCCTACTTTTCTTTTTTGCCTGGCGATCACTGGCACCTGGT
TCGTCATTTGGATCGGTTTCCTTCAAAAGCAATCACCATCACGACCAACA
AGGAAATAGGGTTGGTTGTCGATGGACAAAGCATGACATGCAAATCCATG
TACGAAGCCCGTGAGCCACGAGACATGGACAAACACGTGCACGGCCCTGA
ATGCAACGTCGTGTCACATGATAAGAGCTCATGCAAGTTTGCGCTCCGAA
ACATAACCTCCTCCGCTCGCTATGCAGTATTCCTGAGCGCAGTCCAAACC
GGTGACAAAATTGTAATCACCTTCTGCTGA
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