prot_P-lacustris_contig106.537.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig106.537.1
Unique Nameprot_P-lacustris_contig106.537.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length372
Homology
BLAST of mRNA_P-lacustris_contig106.537.1 vs. uniprot
Match: D8LC14_ECTSI (RF_PROK_I domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC14_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 2.630e-72
Identity = 141/216 (65.28%), Postives = 159/216 (73.61%), Query Frame = 0
Query:  115 GAKRRLSPDTTAAYWRPGSSPRTAPLSTSAA---GGWGQASAGGMGPT-----------RGEVNHDLELHDDIRSKTPRPQNFGEVPEDQLQVTFTRSSGSGGQNVNKVSTKVEMRFVVSEAEWLPHDVRLRLARQEKGRINNKGELVVTAQEFRTQKQNRSHALQKLRDMVNEAWEPAKERKMRTGISKKGKEMRRKDKLHRSKVGFYACKVACR 316
            GAKRRLS   +     P +SP T P  T AA   GG G+  A                 RG +   L    D R  TPRP++FGEVPEDQLQV+FTR+SG+GGQNVNKVSTKVEMRFVVSEAEWLP+DVRLRLARQEKGR+NNKGELVVTAQEFRTQKQNRS AL KLR+M+NEAWEPAKERKMRTGISKKGK +R++DKLHRSKV     K++ R
Sbjct:   38 GAKRRLS---SGPEGGPAASPGTVPWGTGAAEGVGGRGRGQASXXXXXXXXXXXXXXXGRGTIARGLH---DRRPYTPRPKSFGEVPEDQLQVSFTRASGAGGQNVNKVSTKVEMRFVVSEAEWLPYDVRLRLARQEKGRMNNKGELVVTAQEFRTQKQNRSQALAKLREMINEAWEPAKERKMRTGISKKGKAIRKQDKLHRSKVKAGRSKLSSR 247          
BLAST of mRNA_P-lacustris_contig106.537.1 vs. uniprot
Match: A0A7S2PK85_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PK85_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.490e-31
Identity = 63/115 (54.78%), Postives = 88/115 (76.52%), Query Frame = 0
Query:  186 VPEDQLQVTFTRSSGSGGQNVNKVSTKVEMRFVVSEAEWLPHDVRLRLARQEKGRINNKGELVVTAQEFRTQKQNRSHALQKLRDMVNEAWEPAKERKMRTGISKKGKEMRRKDK 300
            +PEDQ+Q++F R+SG+GGQNVNKV+TKVE+RF +  A W+P +VR RL   E GRINN+G   +T QE RTQ QNR  A++KL+D++  +W+  K RK+R G++KK KE RR++K
Sbjct:  126 IPEDQIQLSFARASGAGGQNVNKVNTKVELRFHIDSANWIPREVRDRLKTNEAGRINNEGYFAITCQENRTQVQNRKEAIKKLQDILKSSWDRPKVRKLRKGLTKKAKENRRENK 240          
BLAST of mRNA_P-lacustris_contig106.537.1 vs. uniprot
Match: B8C3Q8_THAPS (RF_PROK_I domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3Q8_THAPS)

HSP 1 Score: 122 bits (307), Expect = 1.530e-30
Identity = 65/115 (56.52%), Postives = 82/115 (71.30%), Query Frame = 0
Query:  186 VPEDQLQVTFTRSSGSGGQNVNKVSTKVEMRFVVSEAEWLPHDVRLRLARQEKGRINNKGELVVTAQEFRTQKQNRSHALQKLRDMVNEAWEPAKERKMRTGISKKGKEMRRKDK 300
            +PEDQ+Q +F RSSG+GGQNVNKV TKVE+RF +  A W+P +VR RL   E  RINN G + V +QE+RTQ QNR  AL+KL D++  +W   K RKMR G+S K KE RR+ K
Sbjct:    3 IPEDQIQTSFARSSGAGGQNVNKVETKVELRFHLDSASWIPAEVRERLKTNEANRINNDGFMSVNSQEYRTQVQNRKDALKKLEDILRNSWARPKVRKMRKGLSAKTKENRREMK 117          
BLAST of mRNA_P-lacustris_contig106.537.1 vs. uniprot
Match: K0R9L2_THAOC (RF_PROK_I domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R9L2_THAOC)

HSP 1 Score: 124 bits (310), Expect = 1.620e-29
Identity = 64/119 (53.78%), Postives = 87/119 (73.11%), Query Frame = 0
Query:  186 VPEDQLQVTFTRSSGSGGQNVNKVSTKVEMRFVVSEAEWLPHDVRLRLARQEKGRINNKGELVVTAQEFRTQKQNRSHALQKLRDMVNEAWEPAKERKMRTGISKKGKEMRRKDKLHRS 304
            +PE++LQ+TF R+SG+GGQNVNKV+TKVEMRF +  AEW+P +VR RL   E  RINN+G + +T+QE RTQ QNR  A++KL+D+V  +W   K RK R G ++K KE R ++K   S
Sbjct:  127 IPENELQITFARASGAGGQNVNKVNTKVEMRFHLPSAEWIPSEVRDRLQNNEANRINNEGYMSITSQEHRTQMQNRKDAMKKLQDIVRNSWARPKVRKTRKGPTRKAKEKRLENKKKNS 245          
BLAST of mRNA_P-lacustris_contig106.537.1 vs. uniprot
Match: A0A1Z5KFY9_FISSO (Peptidyl-tRNA hydrolase ICT1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFY9_FISSO)

HSP 1 Score: 122 bits (306), Expect = 3.070e-29
Identity = 70/145 (48.28%), Postives = 96/145 (66.21%), Query Frame = 0
Query:  175 SKTPRPQNFG-------------EVPEDQLQVTFTRSSGSGGQNVNKVSTKVEMRFVVSEAEWLPHDVRLRLARQEKGRINNKGELVVTAQEFRTQKQNRSHALQKLRDMVNEAWEPAKERKMRTGISKKGKEMRRKDKLHRSKV 306
            S TPR  N G             ++PE+ L  +F RSSG+GGQNVNKV+++V++R  V+EA W+P++VR RL +Q+  RI+ +G L + AQE RTQ  NR  A+QKLRDM+ +AW   KER++R GIS K KE R++ K  RS V
Sbjct:   75 STTPRNNNNGSNNHDNWKVPEYIDIPEENLDFSFVRSSGAGGQNVNKVNSQVQLRLNVNEAYWIPYEVRQRLMQQQANRISKEGVLTIAAQEHRTQVANRKAAIQKLRDMLLQAWPRPKERRIRQGISIKTKEQRKEFKRRRSDV 219          
BLAST of mRNA_P-lacustris_contig106.537.1 vs. uniprot
Match: A0A7S2BJ82_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BJ82_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.890e-28
Identity = 72/135 (53.33%), Postives = 92/135 (68.15%), Query Frame = 0
Query:  173 IRSKTPRPQN-FGEVPEDQLQVTFTRSSGSGGQNVNKVSTKVEMRFVVSEAEWLPHDVRLRLARQEKGRINNKGELVVTAQEFRTQKQNRSHALQKLRDMVNEAWEPAKERKMRTGISKKGKEMRRKDKLHRSKV 306
            +R  T  PQ+   +VPE++L  TFT S G GGQNVNKV+T+   RF V  A+WLP +VR RL  Q++GR+N K EL+V++QE RTQ++NR   L KL+ +V EA    KER + T ISKKGK  RR  K HRSKV
Sbjct:   62 LRFGTHGPQDGIIDVPENRLVFTFTPSQGPGGQNVNKVNTRAVARFHVPSADWLPVEVRGRLVEQQRGRMNQKDELIVSSQEHRTQRRNRVECLLKLKLLVAEAAVEPKERNLYTDISKKGKGQRRDAKRHRSKV 196          
BLAST of mRNA_P-lacustris_contig106.537.1 vs. uniprot
Match: A0A1Z5KKA6_FISSO (Peptidyl-tRNA hydrolase ICT1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKA6_FISSO)

HSP 1 Score: 117 bits (294), Expect = 1.620e-27
Identity = 63/122 (51.64%), Postives = 89/122 (72.95%), Query Frame = 0
Query:  185 EVPEDQLQVTFTRSSGSGGQNVNKVSTKVEMRFVVSEAEWLPHDVRLRLARQEKGRINNKGELVVTAQEFRTQKQNRSHALQKLRDMVNEAWEPAKERKMRTGISKKGKEMRRKDKLHRSKV 306
            ++PE+ L  +F RSSG+GGQNVNKV+++V++R  V EA W+P++VR RL +Q+  RI+ +G L + AQE RTQ  NR  A+QKL++M+ +AW   KER+MR GIS K KE R++ K  RS V
Sbjct:   97 DIPEENLDFSFVRSSGAGGQNVNKVNSQVQVRLNVHEAYWIPYEVRQRLLQQQANRISKEGVLTIAAQEHRTQVANRKAAVQKLQNMLLQAWPRPKERRMRQGISIKTKEQRKEFKRRRSDV 218          
BLAST of mRNA_P-lacustris_contig106.537.1 vs. uniprot
Match: A0A7S1D533_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D533_CYCTE)

HSP 1 Score: 115 bits (287), Expect = 4.090e-26
Identity = 62/122 (50.82%), Postives = 85/122 (69.67%), Query Frame = 0
Query:  185 EVPEDQLQVTFTRSSGSGGQNVNKVSTKVEMRFVVSEAEWLPHDVRLRLARQEKGRINNKGELVVTAQEFRTQKQNRSHALQKLRDMVNEAWEPAKERKMRTGISKKGKEMRRKDKLHRSKV 306
            E+PED++ ++F+RS GSGGQNVNKV+TKVE+RF + +A+WLP +VR R+  Q   RIN  G   + + E RTQ+QNR  A  KL+++V  A+   K RK+R GISKK KE   +DK  R +V
Sbjct:  133 EIPEDRVDISFSRSGGSGGQNVNKVNTKVELRFKLDDADWLPDEVRDRIREQAPNRINKDGVFNIQSSENRTQQQNRRAAFTKLQEIVLRAYPRPKVRKLRKGISKKAKERNLEDKKRRGQV 254          
BLAST of mRNA_P-lacustris_contig106.537.1 vs. uniprot
Match: A0A8J5Y1J9_DIALT (RF_PROK_I domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y1J9_DIALT)

HSP 1 Score: 111 bits (277), Expect = 8.330e-26
Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = 0
Query:  186 VPEDQLQVTFTRSSGSGGQNVNKVSTKVEMRFVVSEAEWLPHDVRLRLARQEKGRINNKGELVVTAQEFRTQKQNRSHALQKLRDMVNEAWEPAKERKMRTGISKKGKEMRRKDKLHRSKV 306
            VP+ ++Q+  +RSSG GGQNVNKV+TKVE+RF V  A+WLP DV+ RL      R+N +GEL+VTA E R+Q  N   AL+K++++V+ A  P KER+MR G+S   K  R +DK   +KV
Sbjct:   33 VPKAKMQIAHSRSSGPGGQNVNKVNTKVELRFNVRAADWLPADVKARLIDDNSNRMNKEGELIVTASESRSQSANMDSALRKVQELVDVACIPPKEREMRVGLSAVTKRQRVEDKRRTAKV 153          
BLAST of mRNA_P-lacustris_contig106.537.1 vs. uniprot
Match: A0A7S0CS25_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CS25_9EUKA)

HSP 1 Score: 111 bits (278), Expect = 2.790e-25
Identity = 65/134 (48.51%), Postives = 90/134 (67.16%), Query Frame = 0
Query:  168 ELHDDIRSKTPRPQNFGEVPEDQLQVTFTRSSGSGGQNVNKVSTKVEMRFVVSEAEWLPHDVRLRLARQEKGRINNKGELVVTAQEFRTQKQNRSHALQKLRDMVNEA-WEPAK----ERKMRTGISKKGKEMR 296
            E   D  +  P+P    ++ +D +++TF RSSG+GGQNVNKV+TKV+MRF V EAEW+P  V+ +L  QEK RINN  ELVV +Q+ RTQ  N   AL+KL+DM+++A W P +    ++K    + KK KEMR
Sbjct:   76 EERGDPAAAEPKPLPERKITKDDVKITFARSSGAGGQNVNKVNTKVDMRFNVLEAEWIPEWVKEKLLEQEKNRINNNFELVVQSQKHRTQLSNIDDALRKLQDMIDKASWLPKETSEEQKKKMKALKKKAKEMR 209          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig106.537.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC14_ECTSI2.630e-7265.28RF_PROK_I domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2PK85_9STRA1.490e-3154.78Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8C3Q8_THAPS1.530e-3056.52RF_PROK_I domain-containing protein (Fragment) n=1... [more]
K0R9L2_THAOC1.620e-2953.78RF_PROK_I domain-containing protein n=2 Tax=Thalas... [more]
A0A1Z5KFY9_FISSO3.070e-2948.28Peptidyl-tRNA hydrolase ICT1 n=1 Tax=Fistulifera s... [more]
A0A7S2BJ82_9STRA1.890e-2853.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Z5KKA6_FISSO1.620e-2751.64Peptidyl-tRNA hydrolase ICT1 n=1 Tax=Fistulifera s... [more]
A0A7S1D533_CYCTE4.090e-2650.82Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A8J5Y1J9_DIALT8.330e-2650.41RF_PROK_I domain-containing protein n=1 Tax=Diacro... [more]
A0A7S0CS25_9EUKA2.790e-2548.51Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000352Peptide chain release factor class IPFAMPF00472RF-1coord: 185..304
e-value: 7.7E-21
score: 74.2
IPR000352Peptide chain release factor class IPROSITEPS00745RF_PROK_Icoord: 197..213
NoneNo IPR availableGENE3D3.30.160.20coord: 181..307
e-value: 1.5E-37
score: 130.4
NoneNo IPR availablePANTHERPTHR11075:SF54PEPTIDYL-TRNA HYDROLASE ICT1, MITOCHONDRIALcoord: 180..305
NoneNo IPR availablePANTHERPTHR11075PEPTIDE CHAIN RELEASE FACTORcoord: 180..305
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..371
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..30
NoneNo IPR availableSUPERFAMILY110916Peptidyl-tRNA hydrolase domain-likecoord: 182..279

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig106contigP-lacustris_contig106:781..3086 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig106.537.1mRNA_P-lacustris_contig106.537.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig106 766..4032 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig106.537.1 ID=prot_P-lacustris_contig106.537.1|Name=mRNA_P-lacustris_contig106.537.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=372bp
MTLVFASRRGLSLLTPFPAILLRNGSTCIPSPPKQLSPFVASKSTIVSYD
YQPIAPPVQRCGAVRALVTPLSMAAAGAGKGGSPSIGGGSRSSSGSRPGH
HPSSTSPSPTSSLGGAKRRLSPDTTAAYWRPGSSPRTAPLSTSAAGGWGQ
ASAGGMGPTRGEVNHDLELHDDIRSKTPRPQNFGEVPEDQLQVTFTRSSG
SGGQNVNKVSTKVEMRFVVSEAEWLPHDVRLRLARQEKGRINNKGELVVT
AQEFRTQKQNRSHALQKLRDMVNEAWEPAKERKMRTGISKKGKEMRRKDK
LHRSKVGFYACKVACRVVECKEREASGLKILVPACSVALQVSFAPCTPFA
HELCFMSRPWCRSFELVALKH*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000352Pep_chain_release_fac_I