mRNA_P-lacustris_contig1057.529.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1057.529.1
Unique NamemRNA_P-lacustris_contig1057.529.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1057.529.1 vs. uniprot
Match: D8LJZ5_ECTSI (ND11 homolog, NADH dehydrogenase (Ubiquinone) subunit 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJZ5_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.270e-44
Identity = 96/135 (71.11%), Postives = 101/135 (74.81%), Query Frame = 1 
Query:    1 MSSSIAMISRIGVSARASAAATRACG---------SFDCKTSAARASLSYSAFASNKNTNSSAVAAAGGREVSRESGLTRNGGVPRVQEKDIDIAPVGALTSKPYAFQARPWELRHAESIDVSDGVGSNIRVDYK 378
            MS SIAMISR+G SARA+AAATRACG         SF C  SA RASLSYSAFA+  N  +      GG EV RE+G    GGV RVQE  IDIAPVGALTSKPYAFQARPWELRHAESIDVSDGVGSNIRVDYK
Sbjct:    1 MSGSIAMISRVGGSARATAAATRACGAVAGSSSSSSFSCAISAPRASLSYSAFATTNN--ALPAKRQGGGEVEREAGAASKGGVLRVQENSIDIAPVGALTSKPYAFQARPWELRHAESIDVSDGVGSNIRVDYK 133
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BLAST of mRNA_P-lacustris_contig1057.529.1 vs. uniprot
Match: A0A1Y1N807_PHOPY (4Fe-4S Mo/W bis-MGD-type domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N807_PHOPY)

HSP 1 Score: 81.3 bits (199), Expect = 4.680e-16
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:  247 IDIAPVGALTSKPYAFQARPWELRHAESIDVSDGVGSNIRVDYK 378
            ID+ PVGALTSKPYAF+ARPWEL+H ESIDV DG+GSNIRVD +
Sbjct:   74 IDLCPVGALTSKPYAFRARPWELKHTESIDVLDGLGSNIRVDSR 117
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BLAST of mRNA_P-lacustris_contig1057.529.1 vs. uniprot
Match: A0A383UZL0_BLUHO (Uncharacterized protein n=3 Tax=Blumeria TaxID=34372 RepID=A0A383UZL0_BLUHO)

HSP 1 Score: 82.0 bits (201), Expect = 1.130e-15
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:  247 IDIAPVGALTSKPYAFQARPWELRHAESIDVSDGVGSNIRVDYK 378
            ID+ PVGALTSKPYAF+ARPWEL+H ESIDV DG+GSNIR+D K
Sbjct:  230 IDLCPVGALTSKPYAFRARPWELKHTESIDVLDGLGSNIRIDSK 273
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BLAST of mRNA_P-lacustris_contig1057.529.1 vs. uniprot
Match: A0A2S7PEZ9_9HELO (4Fe-4S Mo/W bis-MGD-type domain-containing protein n=1 Tax=Rutstroemia sp. NJR-2017a BBW TaxID=2070414 RepID=A0A2S7PEZ9_9HELO)

HSP 1 Score: 81.6 bits (200), Expect = 1.500e-15
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:  247 IDIAPVGALTSKPYAFQARPWELRHAESIDVSDGVGSNIRVDYK 378
            ID+ PVGALTSKPYAF+ARPWEL+H+ESIDV DG+GSNIRVD +
Sbjct:   82 IDLCPVGALTSKPYAFRARPWELKHSESIDVLDGLGSNIRVDTR 125
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BLAST of mRNA_P-lacustris_contig1057.529.1 vs. uniprot
Match: D2Z233_HETAK (NADH dehydrogenase subunit 11 n=10 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z233_HETAK)

HSP 1 Score: 81.6 bits (200), Expect = 1.530e-15
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  247 IDIAPVGALTSKPYAFQARPWELRHAESIDVSDGVGSNIRVDYK 378
            +D+ PVGALTSKPYAF ARPWE+R  ESIDV DGVGSNIRVD+K
Sbjct:  192 VDLCPVGALTSKPYAFNARPWEIRSVESIDVFDGVGSNIRVDFK 235
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BLAST of mRNA_P-lacustris_contig1057.529.1 vs. uniprot
Match: A0A0C3DAM4_9PEZI (Uncharacterized protein n=5 Tax=Leotiomycetes TaxID=147548 RepID=A0A0C3DAM4_9PEZI)

HSP 1 Score: 81.6 bits (200), Expect = 1.540e-15
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:  247 IDIAPVGALTSKPYAFQARPWELRHAESIDVSDGVGSNIRVDYK 378
            ID+ PVGALTSKPYAF+ARPWEL+H+ESIDV DG+GSNIRVD +
Sbjct:  222 IDLCPVGALTSKPYAFRARPWELKHSESIDVLDGLGSNIRVDSR 265
[Close]
BLAST of mRNA_P-lacustris_contig1057.529.1 vs. uniprot
Match: UPI0015C2F729 (NADH dehydrogenase (ubiquinone) Fe-S protein 1 n=1 Tax=Geosmithia morbida TaxID=1094350 RepID=UPI0015C2F729)

HSP 1 Score: 81.6 bits (200), Expect = 1.540e-15
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:  247 IDIAPVGALTSKPYAFQARPWELRHAESIDVSDGVGSNIRVDYK 378
            ID+ PVGALTSKPYAF+ARPWEL+H+ESIDV DG+GSNIRVD +
Sbjct:  222 IDLCPVGALTSKPYAFRARPWELKHSESIDVLDGLGSNIRVDSR 265
[Close]
BLAST of mRNA_P-lacustris_contig1057.529.1 vs. uniprot
Match: A7E8Y9_SCLS1 (NADH-ubiquinone oxidoreductase 78 kDa subunit, mitochondrial n=10 Tax=Sclerotiniaceae TaxID=28983 RepID=A7E8Y9_SCLS1)

HSP 1 Score: 81.6 bits (200), Expect = 1.540e-15
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:  247 IDIAPVGALTSKPYAFQARPWELRHAESIDVSDGVGSNIRVDYK 378
            ID+ PVGALTSKPYAF+ARPWEL+H+ESIDV DG+GSNIRVD +
Sbjct:  227 IDLCPVGALTSKPYAFRARPWELKHSESIDVLDGLGSNIRVDSR 270
[Close]
BLAST of mRNA_P-lacustris_contig1057.529.1 vs. uniprot
Match: M7U5J2_BOTF1 (Putative nadh-ubiquinone oxidoreductase 78 kDa mitochondrial protein n=18 Tax=Helotiales TaxID=5178 RepID=M7U5J2_BOTF1)

HSP 1 Score: 81.6 bits (200), Expect = 1.540e-15
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:  247 IDIAPVGALTSKPYAFQARPWELRHAESIDVSDGVGSNIRVDYK 378
            ID+ PVGALTSKPYAF+ARPWEL+H+ESIDV DG+GSNIRVD +
Sbjct:  227 IDLCPVGALTSKPYAFRARPWELKHSESIDVLDGLGSNIRVDSR 270
[Close]
BLAST of mRNA_P-lacustris_contig1057.529.1 vs. uniprot
Match: A0A4U6XE17_9PEZI (NADH-ubiquinone oxidoreductase 78 kDa subunit, mitochondrial n=15 Tax=Colletotrichum TaxID=5455 RepID=A0A4U6XE17_9PEZI)

HSP 1 Score: 81.6 bits (200), Expect = 1.540e-15
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:  247 IDIAPVGALTSKPYAFQARPWELRHAESIDVSDGVGSNIRVDYK 378
            ID+ PVGALTSKPYAF+ARPWEL+H+ESIDV DG+GSNIRVD +
Sbjct:  227 IDLCPVGALTSKPYAFRARPWELKHSESIDVLDGLGSNIRVDSR 270
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1057.529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJZ5_ECTSI1.270e-4471.11ND11 homolog, NADH dehydrogenase (Ubiquinone) subu... [more]
A0A1Y1N807_PHOPY4.680e-1679.554Fe-4S Mo/W bis-MGD-type domain-containing protein... [more]
A0A383UZL0_BLUHO1.130e-1579.55Uncharacterized protein n=3 Tax=Blumeria TaxID=343... [more]
A0A2S7PEZ9_9HELO1.500e-1579.554Fe-4S Mo/W bis-MGD-type domain-containing protein... [more]
D2Z233_HETAK1.530e-1579.55NADH dehydrogenase subunit 11 n=10 Tax=Heterosigma... [more]
A0A0C3DAM4_9PEZI1.540e-1579.55Uncharacterized protein n=5 Tax=Leotiomycetes TaxI... [more]
UPI0015C2F7291.540e-1579.55NADH dehydrogenase (ubiquinone) Fe-S protein 1 n=1... [more]
A7E8Y9_SCLS11.540e-1579.55NADH-ubiquinone oxidoreductase 78 kDa subunit, mit... [more]
M7U5J2_BOTF11.540e-1579.55Putative nadh-ubiquinone oxidoreductase 78 kDa mit... [more]
A0A4U6XE17_9PEZI1.540e-1579.55NADH-ubiquinone oxidoreductase 78 kDa subunit, mit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1057contigP-lacustris_contig1057:72004..72381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue8.1e-37
Seed eggNOG ortholog2880.D8LJZ5
KEGG rclassRC00061
KEGG koko:K03934
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.NADH dehydrogenase (quinone) activity
EggNOG OGsCOG1034@1,KOG2282@2759
EC1.6.5.3,1.6.99.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815327.349837-CDS-P-lacustris_contig1057:72003..723811622815327.349837-CDS-P-lacustris_contig1057:72003..72381Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1057 72004..72381 +
1693493478.681076-CDS-P-lacustris_contig1057:72003..723811693493478.681076-CDS-P-lacustris_contig1057:72003..72381Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1057 72004..72381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1057.529.1prot_P-lacustris_contig1057.529.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1057 72004..72381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1057.529.1

>prot_P-lacustris_contig1057.529.1 ID=prot_P-lacustris_contig1057.529.1|Name=mRNA_P-lacustris_contig1057.529.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=126bp
MSSSIAMISRIGVSARASAAATRACGSFDCKTSAARASLSYSAFASNKNT
NSSAVAAAGGREVSRESGLTRNGGVPRVQEKDIDIAPVGALTSKPYAFQA
RPWELRHAESIDVSDGVGSNIRVDYK
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mRNA from alignment at P-lacustris_contig1057:72004..72381+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1057.529.1 ID=mRNA_P-lacustris_contig1057.529.1|Name=mRNA_P-lacustris_contig1057.529.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=378bp|location=Sequence derived from alignment at P-lacustris_contig1057:72004..72381+ (Pleurocladia lacustris SAG_25_93)
ATGAGCAGCTCTATCGCCATGATCTCGCGGATCGGTGTCTCCGCCCGCGC
ATCGGCCGCGGCAACGAGGGCGTGTGGTAGTTTCGACTGCAAAACCAGCG
CCGCTCGCGCGTCGCTGTCTTACTCAGCGTTCGCCTCGAACAAAAATACC
AACTCGTCGGCTGTTGCAGCGGCGGGAGGGAGGGAGGTGTCTCGGGAATC
GGGGTTGACTAGAAATGGTGGTGTGCCGCGTGTGCAGGAGAAAGACATAG
ATATTGCTCCCGTGGGAGCGCTGACTTCCAAGCCCTACGCGTTCCAGGCG
AGGCCCTGGGAGCTCCGACATGCCGAGAGCATCGATGTCTCGGATGGGGT
GGGAAGCAACATCCGCGTGGACTACAAG
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Coding sequence (CDS) from alignment at P-lacustris_contig1057:72004..72381+

>mRNA_P-lacustris_contig1057.529.1 ID=mRNA_P-lacustris_contig1057.529.1|Name=mRNA_P-lacustris_contig1057.529.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=756bp|location=Sequence derived from alignment at P-lacustris_contig1057:72004..72381+ (Pleurocladia lacustris SAG_25_93)
ATGAGCAGCTCTATCGCCATGATCTCGCGGATCGGTGTCTCCGCCCGCGC
ATCGGCCGCGGCAACGAGGGCGTGTGGTAGTTTCGACTGCAAAACCAGCG
CCGCTCGCGCGTCGCTGTCTTACTCAGCGTTCGCCTCGAACAAAAATACC
AACTCGTCGGCTGTTGCAGCGGCGGGAGGGAGGGAGGTGTCTCGGGAATC
GGGGTTGACTAGAAATGGTGGTGTGCCGCGTGTGCAGGAGAAAGACATAG
ATATTGCTCCCGTGGGAGCGCTGACTTCCAAGCCCTACGCGTTCCAGGCG
AGGCCCTGGGAGCTCCGACATGCCGAGAGCATCGATGTCTCGGATGGGGT
GGGAAGCAACATCCGCGTGGACTACAAGATGAGCAGCTCTATCGCCATGA
TCTCGCGGATCGGTGTCTCCGCCCGCGCATCGGCCGCGGCAACGAGGGCG
TGTGGTAGTTTCGACTGCAAAACCAGCGCCGCTCGCGCGTCGCTGTCTTA
CTCAGCGTTCGCCTCGAACAAAAATACCAACTCGTCGGCTGTTGCAGCGG
CGGGAGGGAGGGAGGTGTCTCGGGAATCGGGGTTGACTAGAAATGGTGGT
GTGCCGCGTGTGCAGGAGAAAGACATAGATATTGCTCCCGTGGGAGCGCT
GACTTCCAAGCCCTACGCGTTCCAGGCGAGGCCCTGGGAGCTCCGACATG
CCGAGAGCATCGATGTCTCGGATGGGGTGGGAAGCAACATCCGCGTGGAC
TACAAG
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