prot_P-lacustris_contig98.16111.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-lacustris_contig98.16111.1
Unique Name	prot_P-lacustris_contig98.16111.1
Type	polypeptide
Organism	Pleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length	280

Homology

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BLAST of mRNA_P-lacustris_contig98.16111.1 vs. uniprot
Match: D8LD48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD48_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 5.350e-51
Identity = 128/228 (56.14%), Postives = 149/228 (65.35%), Query Frame = 0

Query:   52 QRVSSGARSSPRLQLTQRRTPGSARRDASRVGNRFASTRKKASSTKVRGGAFFPGAHRASSGARPATSKVGAAAXXXXXXXRGRKKTAQADAVSKVMNGLKGDVAAAVERVMRKAEAECGAFGTNNQHEVFAGAVRCSTAVTTLLESCSAGVSRMEEDQQKAEMALREIETRHASLSSRCAGMLQAVERNNSSLSAVVERCRAALDNLQQAESRKLKSGLDRATGVKS 279
            +R SS  RSSPRL LTQ+RTP +ARR +  VGNRFAS +++  STK +G     GAHR SSG            XXXXXXX     +  AD V+KVM  LKGD  A +++ M K EAECG F                  V T+LESCSAGVS  EE  + A  ALREIETR ASL+SR + ML+ VE N+S+LSAVVERCRAALD+LQQAESRKLKSGLDRATG KS
Sbjct:   46 KRASSSVRSSPRLHLTQKRTPANARRGSGPVGNRFASNQRQ--STKAKGRTSSVGAHRDSSGGXXXXXXXXXXXXXXXXXXXXXXXS-PADDVAKVMIDLKGDSTAVIDKAMGKVEAECGTF------------------VMTVLESCSAGVSGREEHDETAAAALREIETRQASLASRRSEMLKEVESNSSNLSAVVERCRAALDSLQQAESRKLKSGLDRATGTKS 252

[Close]

BLAST of mRNA_P-lacustris_contig98.16111.1 vs. uniprot
Match: A0A6H5LLS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLS0_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 4.200e-37
Identity = 100/184 (54.35%), Postives = 119/184 (64.67%), Query Frame = 0

Query:   96 TKVRGGAFFPGAHRASSGARPATSKVGAAAXXXXXXXRGRKKTAQADAVSKVMNGLKGDVAAAVERVMRKAEAECGAFGTNNQHEVFAGAVRCSTAVTTLLESCSAGVSRMEEDQQKAEMALREIETRHASLSSRCAGMLQAVERNNSSLSAVVERCRAALDNLQQAESRKLKSGLDRATGVKS 279
            TK +G     GAHR SSG R          XXXXXXX     ++ AD V+K+M  LKGD+ A +++ M K EAECG F                  VTT+LESCSAGVS  EE  + A  ALRE++TR AS++SR + ML+ V  N+S+LSAVVERCRAALDNLQQAESRKLKSGLDRATG KS
Sbjct:   15 TKAKGRTSSVGAHRDSSGGRTXXXXXXXXXXXXXXXXX-XXXSSPADGVAKLMIDLKGDITAVIDKAMGKVEAECGTF------------------VTTVLESCSAGVSGREEHYETAAAALREMKTRQASMASRRSEMLKEVASNSSNLSAVVERCRAALDNLQQAESRKLKSGLDRATGTKS 179

The following BLAST results are available for this feature:

BLAST of mRNA_P-lacustris_contig98.16111.1 vs. uniprot

BLAST of mRNA_P-lacustris_contig98.16111.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LD48_ECTSI	5.350e-51	56.14	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5LLS0_9PHAE	4.200e-37	54.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 203..223
None	No IPR available	COILS	Coil	Coil	coord: 245..265

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-lacustris_contig98	contig	P-lacustris_contig98:135527..141234 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_93	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-lacustris_contig98.16111.1	mRNA_P-lacustris_contig98.16111.1	Pleurocladia lacustris SAG_25_93	mRNA	P-lacustris_contig98 130979..143564 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-lacustris_contig98.16111.1 ID=prot_P-lacustris_contig98.16111.1|Name=mRNA_P-lacustris_contig98.16111.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=280bp
MAVDPKVQQRRRGGGGGNGATSYSSSKKSPPPSPPPKKKKKRRHHIPGFN
TQRVSSGARSSPRLQLTQRRTPGSARRDASRVGNRFASTRKKASSTKVRG
GAFFPGAHRASSGARPATSKVGAAAAAASAGGRGRKKTAQADAVSKVMNG
LKGDVAAAVERVMRKAEAECGAFGTNNQHEVFAGAVRCSTAVTTLLESCS
AGVSRMEEDQQKAEMALREIETRHASLSSRCAGMLQAVERNNSSLSAVVE
RCRAALDNLQQAESRKLKSGLDRATGVKS*