prot_P-lacustris_contig976.16075.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig976.16075.1
Unique Nameprot_P-lacustris_contig976.16075.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length295
Homology
BLAST of mRNA_P-lacustris_contig976.16075.1 vs. uniprot
Match: D8LK53_ECTSI (HTH La-type RNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK53_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 9.180e-95
Identity = 167/235 (71.06%), Postives = 183/235 (77.87%), Query Frame = 0
Query:   15 GVTYYPVQSNV---DFEEQKAYMINMAVRQIEFYFTVENLCRDIFMRSYMDEEGFLPIAFVANFPGVARFGVELEDITAGILASDFLQVDTENETMRMREGWEVWLLPNQATGRQGVPRYIKVDPASISEASRLDATESRGNPEQTTQNFEASAVD---AEEEQVPVK-DSSGGAAKKKDGGVPGPAAERAAQKEGRSLSSGGPAQHEEEVKTELTPLAPAWTPGEAAAGVVQEQ 242
            G TYYP Q+NV    FEEQKAYM N+AVRQIEFYFTVENLCRDIFMRSYMDEEG++PIAFVANFPGVARFGVELEDITAGILASD LQVDTENETMRMREGWEVWLLPNQATG+QGVPRYIKVDPA +SEA R++ TE  G P QTTQ+  ASA D   AE+ Q  +K DS+ GA KK+   V GP AE   Q+     S  G   HE+  KTELTPLAPAWTP  A+   VQEQ
Sbjct:  107 GATYYPTQANVGAESFEEQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDPA-VSEADRVNGTEPSGIPAQTTQDA-ASAGDVPGAEDTQTSLKEDSTAGAEKKEGDSVTGPVAEEEQQRS----SEKGQVSHEDAAKTELTPLAPAWTPVGASTDAVQEQ 335          
BLAST of mRNA_P-lacustris_contig976.16075.1 vs. uniprot
Match: A0A836CAE4_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE4_9STRA)

HSP 1 Score: 136 bits (343), Expect = 4.880e-35
Identity = 82/184 (44.57%), Postives = 111/184 (60.33%), Query Frame = 0
Query:   29 EQKAYMINMAVRQIEFYFTVENLCRDIFMRSYMDEEGFLPIAFVANFPGVARFGVELEDITAGILASDFLQVDTENETMRMREGWEVWLLPNQATGRQGVPRYIKVDPASISEASRLDATESRGNPEQTTQNFEASAVDAEEEQVPVKDSSGGAAKKKDGGVPGPAAERAAQKEGRSLSSGGPA 212
            E K      AV+Q+E+YF+V NLC D+FMRSYMD EG++P+AFVANFPG A  G E  DI   + +S+ L+ D  NETMR+REGW++W+LPN A+G  GVPRYIK+   S  EA+++ A +            EA A    EE       +G AA ++D     PAA  AA + G  +++  PA
Sbjct:    5 EAKKMAAEYAVKQMEWYFSVHNLCSDVFMRSYMDTEGYIPVAFVANFPGCASLGAEFTDILEALKSSEMLEFDEANETMRLREGWDMWILPN-ASGGLGVPRYIKL---SEDEAAKIAAQQ------------EAQAAAKSEEPSAEATMNGAAAVEEDAS---PAAPTAATEGGEEVTAAEPA 169          
BLAST of mRNA_P-lacustris_contig976.16075.1 vs. uniprot
Match: A0A7S1UC17_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC17_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.660e-25
Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = 0
Query:   38 AVRQIEFYFTVENLCRDIFMRSYMDEEGFLPIAFVANFPGVARFGVELEDITAGILASDFLQVDTENETMRMREGWEVWLLPNQATGRQGVPRYIKV 134
            AVR IE  F+  +LC D ++R  MD EG++P+AFVAN+P VA++G   ED+ +GI +S+ L++D ENETMR+RE W+ WL P+   G  G PRY+KV
Sbjct:   85 AVRAIEMTFSPNHLCTDEWLRQNMDVEGYIPVAFVANYPHVAQYGALYEDLLSGIASSEILELDAENETMRLRENWQQWLFPD-GKGGMGCPRYVKV 180          
BLAST of mRNA_P-lacustris_contig976.16075.1 vs. uniprot
Match: K8ZBX0_NANGC (Rna-binding la domain protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZBX0_NANGC)

HSP 1 Score: 109 bits (272), Expect = 1.610e-24
Identity = 52/118 (44.07%), Postives = 80/118 (67.80%), Query Frame = 0
Query:   29 EQKAYMINMAVRQIEFYFTVENLCRDIFMRSYMDEEGFLPIAFVANFPGVARFGVELEDITAGIL-ASDFLQVDTENETMRMREGWEVWLLPNQATGRQGVPRYIKVDPASISEASRL 145
            E + Y+ +MAV+QIE+YF+V+NLCRD ++R+++DEEG++P+A + NFP VA F  +  +I   +  AS  L+ D  NET+R++E    WLLPN   G  G PR++K  P +  + S+L
Sbjct:   54 EAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPN-GRGGMGCPRWLKQAPDTPPQESKL 170          
BLAST of mRNA_P-lacustris_contig976.16075.1 vs. uniprot
Match: A0A7R9U3W9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3W9_9STRA)

HSP 1 Score: 109 bits (273), Expect = 8.000e-24
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 0
Query:   29 EQKAYMINMAVRQIEFYFTVENLCRDIFMRSYMDEEGFLPIAFVANFPGVARFGVELEDITAGILASDFLQVDTENETMRMREGWEVWLLPNQATGRQGVPRYIKVDP 136
            E +  +   AVR IE  F+  +LC D F+R +MD  G++P+A VAN+  VA++G   ED+ AG+  S+ LQ+D ENET+R+RE WE WL P+   G  G PRY+KV P
Sbjct:  224 ENRTMLAASAVRAIEMTFSPNHLCTDEFLRQHMDVAGYVPVALVANYSHVAQYGALYEDLLAGLANSELLQLDAENETVRLRENWEQWLFPD-GKGGMGCPRYVKVSP 330          
BLAST of mRNA_P-lacustris_contig976.16075.1 vs. uniprot
Match: A0A225VMU3_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VMU3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.470e-22
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 0
Query:   38 AVRQIEFYFTVENLCRDIFMRSYMDEEGFLPIAFVANFPGVARFGVELEDITAGILASDFLQVDTENETMRMREGWEVWLLPNQATGRQGVPRYIKVD 135
            A  QIEFYFT +NL RDIF+R +MD +GF+P+AFV +F  V     + E +   +  SD +++D +NE +R+REGW+ W+ PN A G  GVPRYIK++
Sbjct:  121 AKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKHSDSVELDEQNEKIRLREGWQKWVWPN-AEGGYGVPRYIKLE 217          
BLAST of mRNA_P-lacustris_contig976.16075.1 vs. uniprot
Match: A0A662WMH8_9STRA (HTH La-type RNA-binding domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMH8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.670e-22
Identity = 51/109 (46.79%), Postives = 71/109 (65.14%), Query Frame = 0
Query:   38 AVRQIEFYFTVENLCRDIFMRSYMDEEGFLPIAFVANFPGVARFGVELEDITAGILASDFLQVDTENETMRMREGWEVWLLPNQATGRQGVPRYIKV----DPASISEA 142
            A  QIEFYFT +NL RDIFMR +MD +GF+P+AFV +F  V     + E +   +  S+ +++D +NE +R+R+GW+ W+ PN A G  GVPRYIK      PA  S+A
Sbjct:   35 AKNQIEFYFTSDNLVRDIFMRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEVMKHSETVELDEQNEKIRLRDGWQKWVWPN-AEGGYGVPRYIKAGEEPSPADASKA 142          
BLAST of mRNA_P-lacustris_contig976.16075.1 vs. uniprot
Match: A0A4D9CXU2_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXU2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.730e-22
Identity = 51/118 (43.22%), Postives = 79/118 (66.95%), Query Frame = 0
Query:   29 EQKAYMINMAVRQIEFYFTVENLCRDIFMRSYMDEEGFLPIAFVANFPGVARFGVELEDITAGIL-ASDFLQVDTENETMRMREGWEVWLLPNQATGRQGVPRYIKVDPASISEASRL 145
            E + Y+ +MAV+QIE+YF+V+NLCRD ++R+++DEEG++P+AF+ NFP VA F  +  +I   +   S  L+ D  NET+R++E    WLLPN   G  G PR++K  P +  +  +L
Sbjct:  296 EAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLAFICNFPTVASFAADYLEIVKTLQEVSSVLEYDEANETLRLKEKATAWLLPN-GRGGVGCPRWLKQAPDTPPQQPKL 412          
BLAST of mRNA_P-lacustris_contig976.16075.1 vs. uniprot
Match: H3GP14_PHYRM (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP14_PHYRM)

HSP 1 Score: 101 bits (252), Expect = 4.100e-22
Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 0
Query:   38 AVRQIEFYFTVENLCRDIFMRSYMDEEGFLPIAFVANFPGVARFGVELEDITAGILASDFLQVDTENETMRMREGWEVWLLPNQATGRQGVPRYIKV 134
            A  QIEFYFT +NL RDIF+R +MD +GF+P+AFV +F  V     + E +   +  SD +++D +NE +R+R+GW+ W+ PN A G  GVPRYIK+
Sbjct:  122 AKNQIEFYFTNDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKNSDTMELDEQNEKIRLRQGWQTWVWPN-ADGGYGVPRYIKL 217          
BLAST of mRNA_P-lacustris_contig976.16075.1 vs. uniprot
Match: G4ZF40_PHYSP (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZF40_PHYSP)

HSP 1 Score: 101 bits (252), Expect = 4.580e-22
Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 0
Query:   38 AVRQIEFYFTVENLCRDIFMRSYMDEEGFLPIAFVANFPGVARFGVELEDITAGILASDFLQVDTENETMRMREGWEVWLLPNQATGRQGVPRYIKV 134
            A  QIEFYFT +NL RDIF+R +MD +GF+P+AFV +F  V     +   +   +  S+ L++D +NE +R+REGW+ W+ PN A G  GVPRYIKV
Sbjct:  128 AKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYASLLEAVKQSETLELDEQNEKIRLREGWQKWVWPN-AEGGYGVPRYIKV 223          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig976.16075.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK53_ECTSI9.180e-9571.06HTH La-type RNA-binding domain-containing protein ... [more]
A0A836CAE4_9STRA4.880e-3544.57HTH La-type RNA-binding domain-containing protein ... [more]
A0A7S1UC17_9STRA2.660e-2551.55Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K8ZBX0_NANGC1.610e-2444.07Rna-binding la domain protein (Fragment) n=2 Tax=N... [more]
A0A7R9U3W9_9STRA8.000e-2447.22Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A225VMU3_9STRA1.470e-2248.98HTH La-type RNA-binding domain-containing protein ... [more]
A0A662WMH8_9STRA2.670e-2246.79HTH La-type RNA-binding domain-containing protein ... [more]
A0A4D9CXU2_9STRA3.730e-2243.22HTH La-type RNA-binding domain-containing protein ... [more]
H3GP14_PHYRM4.100e-2248.45HTH La-type RNA-binding domain-containing protein ... [more]
G4ZF40_PHYSP4.580e-2249.48HTH La-type RNA-binding domain-containing protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006630La-type HTH domainSMARTSM00715lacoord: 32..110
e-value: 3.1E-14
score: 63.3
IPR006630La-type HTH domainPFAMPF05383Lacoord: 39..89
e-value: 1.2E-13
score: 50.9
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 28..119
score: 18.05
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 22..117
e-value: 1.3E-18
score: 68.4
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 33..205
NoneNo IPR availablePANTHERPTHR22792:SF76LARP (RNA BINDING LA RELATED PROTEIN) HOMOLOGcoord: 33..205
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 32..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig976contigP-lacustris_contig976:46218..49113 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig976.16075.1mRNA_P-lacustris_contig976.16075.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig976 45971..49113 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig976.16075.1 ID=prot_P-lacustris_contig976.16075.1|Name=mRNA_P-lacustris_contig976.16075.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=295bp
MHSRVEDEGTVKGMGVTYYPVQSNVDFEEQKAYMINMAVRQIEFYFTVEN
LCRDIFMRSYMDEEGFLPIAFVANFPGVARFGVELEDITAGILASDFLQV
DTENETMRMREGWEVWLLPNQATGRQGVPRYIKVDPASISEASRLDATES
RGNPEQTTQNFEASAVDAEEEQVPVKDSSGGAAKKKDGGVPGPAAERAAQ
KEGRSLSSGGPAQHEEEVKTELTPLAPAWTPGEAAAGVVQEQVSTPQRSP
TATLSPDDKTIPEGETGGKEAAKVTGEAGIPTAESNPPRTATTG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006630La_HTH
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf