prot_P-lacustris_contig967.16000.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig967.16000.1
Unique Nameprot_P-lacustris_contig967.16000.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length227
Homology
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BLAST of mRNA_P-lacustris_contig967.16000.1 vs. uniprot
Match: D7G201_ECTSI (Sel1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G201_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 6.180e-40
Identity = 144/215 (66.98%), Postives = 156/215 (72.56%), Query Frame = 0 
Query:   17 AAACVGDMLYTGTGCLRDYSAALRYYLRAAHAGEASSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFLSAIASVAGLSMLQEQRHRVSFLSQLPLQPSSGLMPSRAGE---AFTTSTTAFSXXXXXXXXXPYSDDGIGEYAAPASTG-GQRKTLGSRPLALQMFQRAADLGHSGAMREVHRLRLRERMDHLVARRG 227
            AAACVGDMLYTGTGCLRDY AALRYY+RAAHAGEA+SA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    D LSAIAS AGL M QEQ+       QLPL+PSSG + S AG    A  T                  DDG    A+ ++ G GQR   G+RPLALQMFQRAA+LGH  AMREVHRLRLRER+DHL+A RG
Sbjct:  840 AAACVGDMLYTGTGCLRDYGAALRYYVRAAHAGEATSANAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERGDPLSAIASAAGLPMFQEQQ-------QLPLRPSSGFLTSMAGAGCPATATPPRCSPPAGGGLFGANGGDDGDLAVASGSTGGVGQRPLWGNRPLALQMFQRAAELGHPEAMREVHRLRLRERIDHLMADRG 1047
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig967.16000.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G201_ECTSI6.180e-4066.98Sel1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 51..86
e-value: 8.6E-7
score: 38.6
coord: 15..50
e-value: 0.019
score: 24.1
IPR006597Sel1-like repeatPFAMPF08238Sel1coord: 21..49
e-value: 7.2E-4
score: 20.2
coord: 51..86
e-value: 9.2E-6
score: 26.2
coord: 189..203
e-value: 1.1
score: 10.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 6..121
e-value: 4.5E-21
score: 77.8
NoneNo IPR availablePANTHERPTHR11102SEL-1-LIKE PROTEINcoord: 13..207
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 13..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig967contigP-lacustris_contig967:77078..78782 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig967.16000.1mRNA_P-lacustris_contig967.16000.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig967 71851..78782 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig967.16000.1 ID=prot_P-lacustris_contig967.16000.1|Name=mRNA_P-lacustris_contig967.16000.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=227bp
MARWSIPRQARGDNKEAAACVGDMLYTGTGCLRDYSAALRYYLRAAHAGE
ASSANAVGLLYELGRGVSRNLKVASIWYQRAADLGSADGAFNAALLLERG
DFLSAIASVAGLSMLQEQRHRVSFLSQLPLQPSSGLMPSRAGEAFTTSTT
AFSPPPPSAGGGPYSDDGIGEYAAPASTGGQRKTLGSRPLALQMFQRAAD
LGHSGAMREVHRLRLRERMDHLVARRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf