prot_P-lacustris_contig961.15967.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig961.15967.1
Unique Nameprot_P-lacustris_contig961.15967.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length229
Homology
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BLAST of mRNA_P-lacustris_contig961.15967.1 vs. uniprot
Match: A0A6H5K301_9PHAE (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K301_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 5.680e-33
Identity = 76/137 (55.47%), Postives = 95/137 (69.34%), Query Frame = 0 
Query:   39 AAGVADPTNEDRRRLARHLGCARMEDVTSAVHEIDERCPEALLLRRAEGWMQQGTGENSGARSSDRGDVCDGKGGGAVRSGGDNMEAFVGTAGAIEIDIDVDALDAWTFWAVERLVAPPAAIRTASRATMAKRTKRR 175
            AA  ADPT EDRRRLARHLG ARMEDVT+AVHEID  CPEAL+ RRA   +++  GE + A  +++G    G        G D +EA VG   A+EI++DVDALDAWTF AVER+VAP  A+R ASR T  +R +++
Sbjct:  170 AAVAADPTTEDRRRLARHLGRARMEDVTAAVHEIDRGCPEALVRRRAGHQIKREEGEKA-AEETEKGRSTGGGCXXXXXXGNDCVEALVGRTAAVEIEVDVDALDAWTFCAVERVVAPHVALRRASRVTATRRARKK 305
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig961.15967.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K301_9PHAE5.680e-3355.47Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig961contigP-lacustris_contig961:23606..24292 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig961.15967.1mRNA_P-lacustris_contig961.15967.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig961 23115..24970 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig961.15967.1 ID=prot_P-lacustris_contig961.15967.1|Name=mRNA_P-lacustris_contig961.15967.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=229bp
MPAGRWLKPSYSRGGGGGSASSHGNASARAKGSSAHNAAAGVADPTNEDR
RRLARHLGCARMEDVTSAVHEIDERCPEALLLRRAEGWMQQGTGENSGAR
SSDRGDVCDGKGGGAVRSGGDNMEAFVGTAGAIEIDIDVDALDAWTFWAV
ERLVAPPAAIRTASRATMAKRTKRRDLRRGAEASCRGRSSDATGAAGVGE
DGGGKRRDAAGAEGRADCRVKRPDTLVS*
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