prot_P-lacustris_contig960.15965.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig960.15965.1
Unique Nameprot_P-lacustris_contig960.15965.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length578
Homology
BLAST of mRNA_P-lacustris_contig960.15965.1 vs. uniprot
Match: D7G1W0_ECTSI (tRNA_int_end_N2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W0_ECTSI)

HSP 1 Score: 409 bits (1050), Expect = 2.050e-133
Identity = 265/570 (46.49%), Postives = 335/570 (58.77%), Query Frame = 0
Query:    8 AMAKDIAATAAARCWAESLGDDGFGHNPVRLRRPTCWAVWHEDLAAFEVLQPRGDYLRSMGTTWRSRIMLHAEEGLWLVERGMLAVHPLPTNPMMVDGSVATATSVVPSPELAHIDGAKTEPNEITIASSELEKAEQVTDQEHNDTEGEGGGRGGAADEIDPSTRSSVPAAPPMAGCKIERSKADPSSPYDCGVPPAGEHEHTLGPAEHGNVARARQAHGRRRTSTVAREERQRAGAKRGRSGTXXXXXXREASPSSSVSVGALHEMVLLQAGVPWECYRAYAALKQRSYVVRRQPEDTVGHNDHAPRAAPLSWIGCTRSTEHXXXXXXXXXXXXXXXXXXXXXSMSIDASDVATPSTSLSSSFNPILPLPVTFHVYNNPPG-SFSFSKRNPGSPHALLAVCRFGDRMPEHRSLAALAERYSNMRASTDMARRWGRLKKGTGKAGL--DLGQRECSPGRRRGGREEAGSGRLSEGLISSRGSDLDQEDSALLHQDSLQQRGGIRSDQRRESSEGQTGGIKIEKGGGGSMVSKSGGADGMLSPGVLIAVVSGEARVHLFDVGLHDTSEAVD 574
            A A   AA++AA  WAE LG  G G +P R  R TCWAVWHE+LA FEVLQPRGD LRSMGTTWRSR+MLHAEEGLWLVERGMLAVHP    P        TA+   PS  +   + A+   +E  I+SS  E A+++ + EH + E EGGG+ G  D++D S   +    PP A            SP D GV   GE +H+L P   G  AR  Q  G R+  T A+E RQRAG KR R G          + + SVSV  L+EMVL +AGVPWECYR YA LK+RSYVVRRQPEDTVGH+D APRAAPLSW   T +T+                       +   A+  ++PS+SL          PVTFHVY+NP G S SF KR+PG P AL+ VCRFGD MP+HRSL AL E ++NM+    M+++W R  +    AG+  DLG  E +P R  G  E   SG  SE + S  G +  Q+ S LL +D  +++     DQ++    G+T G    +G GG  ++ S G + + +PG+ +AVVSGEA+V LFDVGLHD  EA +
Sbjct:    6 ATASASAASSAATEWAEGLGG-GQGDDPGRPGRQTCWAVWHEELAVFEVLQPRGDSLRSMGTTWRSRLMLHAEEGLWLVERGMLAVHPFSPAPKKNHDPTGTASPAAPSSGIGRKNDAREMHDETGISSSTPEIAQEMRNIEHEEKENEGGGQEGLTDDVDSSAGKNARPIPPRAEL----------SPIDSGVILTGESQHSLDPVASGETARTGQGGGCRKVPTAAKEGRQRAGCKRSRPGQGRGERVVRPAAALSVSVSTLYEMVLARAGVPWECYRTYAELKRRSYVVRRQPEDTVGHDDTAPRAAPLSWFQGTGATK------------------TSNNKLITAANHTSSPSSSL----------PVTFHVYSNPSGCSSSFRKRDPGPPDALVVVCRFGDPMPDHRSLVALVELHANMQMKMSMSQQWRRRGREDSTAGVVSDLGPDEAAPDRGSGSPEVPTSGLESERVTSGGGRESGQKGS-LLDEDRQKRQARTLPDQKKGLDGGRTRGRLTTEGSGGRTLAFSKGVEKLSTPGIKLAVVSGEAQVQLFDVGLHDALEAAE 535          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig960.15965.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1W0_ECTSI2.050e-13346.49tRNA_int_end_N2 domain-containing protein n=2 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024336tRNA-splicing endonuclease, subunit Sen54, N-terminalPFAMPF12928tRNA_int_end_N2coord: 43..93
e-value: 1.4E-8
score: 34.8
IPR024337tRNA-splicing endonuclease, subunit Sen54PANTHERPTHR21027TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54coord: 43..435

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig960contigP-lacustris_contig960:70273..73107 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig960.15965.1mRNA_P-lacustris_contig960.15965.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig960 69777..73155 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig960.15965.1 ID=prot_P-lacustris_contig960.15965.1|Name=mRNA_P-lacustris_contig960.15965.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=578bp
MQKLTSSAMAKDIAATAAARCWAESLGDDGFGHNPVRLRRPTCWAVWHED
LAAFEVLQPRGDYLRSMGTTWRSRIMLHAEEGLWLVERGMLAVHPLPTNP
MMVDGSVATATSVVPSPELAHIDGAKTEPNEITIASSELEKAEQVTDQEH
NDTEGEGGGRGGAADEIDPSTRSSVPAAPPMAGCKIERSKADPSSPYDCG
VPPAGEHEHTLGPAEHGNVARARQAHGRRRTSTVAREERQRAGAKRGRSG
TSGSDRGREASPSSSVSVGALHEMVLLQAGVPWECYRAYAALKQRSYVVR
RQPEDTVGHNDHAPRAAPLSWIGCTRSTEHHHHRMTNNNDDENLRSSSSS
SSMSIDASDVATPSTSLSSSFNPILPLPVTFHVYNNPPGSFSFSKRNPGS
PHALLAVCRFGDRMPEHRSLAALAERYSNMRASTDMARRWGRLKKGTGKA
GLDLGQRECSPGRRRGGREEAGSGRLSEGLISSRGSDLDQEDSALLHQDS
LQQRGGIRSDQRRESSEGQTGGIKIEKGGGGSMVSKSGGADGMLSPGVLI
AVVSGEARVHLFDVGLHDTSEAVDFSD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024336tRNA_splic_suSen54_N
IPR024337tRNA_splic_suSen54