prot_P-lacustris_contig957.15934.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig957.15934.1
Unique Nameprot_P-lacustris_contig957.15934.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length447
Homology
BLAST of mRNA_P-lacustris_contig957.15934.1 vs. uniprot
Match: A0A6H5JSJ1_9PHAE (HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ1_9PHAE)

HSP 1 Score: 602 bits (1551), Expect = 5.230e-212
Identity = 310/449 (69.04%), Postives = 359/449 (79.96%), Query Frame = 0
Query:    1 LPALRNSEPSGTTHWVGVSSCRRRAWVMQGSSKCRVLPGGVAKMIREAGCSFLDSTCDAVQSLFGMKDFGGIKASRIFAYDGRRAAILVIENNTRIFCQQVSTGLYDLGLSMEPRPDWQDILELAALSSALED----NSREAVGGMEPLFKPPPLWASVVNMSPCRVSIYQRCADGTTDGVAFHYSVATRSGRVDSTRTQGKHQESIQDAFVIFGTHSAGSMRLEQHSRALTSGNTGSSELHAMIPNKASPPTRRKKDPNRPRGYVSAFNFFVKDKRSAYLLEAQGYSPGNNNEVNKRLGQAWKELTAEEKYFYQARSDDDKCRYLKEVAEYTPPAGGSRIHPRIHPVHRGVKLKGGADSIRETGRPSPAYTHFTNQETIGVRSSKSNAAKSVMSKTFGQRWSGGRHFARISDEEKSSN--SDKKCRMPDEEKQLYKELEEADKIFYNA 443
            LPA ++S  +GTTHWVG SSCR+R W MQGS+   VLP G+A  IR AGC FL+ST  AV+ L  MKD   I  SRIFA+DGR AAILV E+ TR+FCQQ+S GLYDLG+S+EPRPDWQDIL+ AA SS + D    N+  AV GMEPLFK  PLWASVV+++P RVS++QR ADG TDGVAF +S+ +  G + ST  +  +  S+QDAFVIF TH +GS R  +HSRALTSG+T SSE    +P K SPP R++KDPNRPRGYVSAFNFFVKDKRSAY+ +AQG SPGNNNEVNK LGQAWKELT EEK  YQARSD DKCRYLKEVAEYTPP GG+RIHPRIHPVHRGVK  G AD+ +ETGRPSPAYTHFTNQETIGVR SKS AAKS+MSKTFG+RWSGGR F+R+S E+KS N  +++KCRMPDEEK+LYKELEEADK FYN 
Sbjct:   38 LPA-KSSSSAGTTHWVGFSSCRKRVWGMQGSNANGVLPIGIADRIRNAGCLFLNSTRGAVEGLSEMKDLAEIDTSRIFAFDGRHAAILVTEDCTRVFCQQISAGLYDLGVSIEPRPDWQDILDAAA-SSLIPDGVGSNACGAVSGMEPLFKAVPLWASVVHVAPHRVSVHQRSADGATDGVAFQHSLVSGDGGLVSTAKEEMYHSSVQDAFVIFNTHPSGSTRFVEHSRALTSGHTHSSEPRRTVPKKTSPPKRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLKEVAEYTPPVGGARIHPRIHPVHRGVKRSGNADADKETGRPSPAYTHFTNQETIGVRCSKSTAAKSLMSKTFGRRWSGGRQFSRMSHEDKSGNPGTEEKCRMPDEEKELYKELEEADKTFYNT 484          
BLAST of mRNA_P-lacustris_contig957.15934.1 vs. uniprot
Match: D7G5V4_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V4_ECTSI)

HSP 1 Score: 375 bits (963), Expect = 1.980e-125
Identity = 196/300 (65.33%), Postives = 231/300 (77.00%), Query Frame = 0
Query:   28 MQGSSKCRVLPGGVAKMIREAGCSFLDSTCDAVQSLFGMKDFGGIKASRIFAYDGRRAAILVIENNTRIFCQQVSTGLYDLGLSMEPRPDWQDILELAALSSALED----NSREAVGGMEPLFKPPPLWASVVNMSPCRVSIYQRCADGTTDGVAFHYSVATRSGRVDSTRTQGKHQESIQDAFVIFGTHSAGSMRLEQHSRALTSGNTGSSELHAMIPNKASPPTRRKKDPNRPRGYVSAFNFFVKDKRSAYLLEAQGYSPGNNNEVNKRLGQAWKELTAEEKYFYQARSDDDKCRYLK 323
            MQGS+   VLP G A  IR+AGC FL+ST  AV+ L  +KD  GI  SRIFA+DGR AAILV E+ TR+FCQQ+S GLYDLG+S+EPRPDWQDIL+ AA SS + D    N+  AVGGMEPLF   PLWASVV+++P RVS++QR +DG TDGVAF +S+    G + ST  +  +  S+QDAFVIF TH +GS R  +HS+ALTSG+T SSE   M+P K SPP R++KDPNRPRGYVSAFNFFVKDKRSAY+ +AQG SPGNNNEVNK LGQAWKELT EEK  YQARSD DKCRYLK
Sbjct:    1 MQGSNTNGVLPIGFADSIRKAGCLFLNSTLGAVEGLSEVKDLAGIDTSRIFAFDGRHAAILVTEDCTRVFCQQISAGLYDLGVSIEPRPDWQDILDAAA-SSLIPDGVGSNACGAVGGMEPLFNALPLWASVVHVAPHRVSVHQRSSDGVTDGVAFQHSLVNGDGGLVSTAKEEMYHNSVQDAFVIFNTHPSGSTRFVEHSQALTSGHTRSSEARRMVPKKTSPPRRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK 299          
BLAST of mRNA_P-lacustris_contig957.15934.1 vs. uniprot
Match: A0A2Z4MTA2_SACJA (HMG-box containing protein isoform 1 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4MTA2_SACJA)

HSP 1 Score: 323 bits (828), Expect = 1.670e-103
Identity = 198/434 (45.62%), Postives = 251/434 (57.83%), Query Frame = 0
Query:   28 MQGSSKCRVLPGGVAKMIREAGCSFLDSTCDAVQSLFGMKDFGGIKASRIFAYDGRRAAILVIENNTRIFCQQVSTGLYDLGLSMEPRPDWQDILELAALSSALEDNSREAVGGMEPL-------FKPPPLWASVVNMSPCRVSIYQRCADGTTDGVAFHYSVATRSGRVDSTRTQGKHQESIQDAFVIFGTHSAGSMRLEQHSRALTSGNTGSSELHAMIP-NKASPPTRRKKDPNRPRGYVSAFNFFVKDKRSAYLLE---AQGYSPGNNNEVNKRLGQAWKELTAEEKYFYQARSDDDKCRYLKEVAEYTPPAGGSRIHPRIHPVHRGVKLKGGADSIRETG-----RPSPAYTHFTNQETIGVRSSKSNAAKSVMSKTFGQRWSGGRHFARISDEEKSSNSDKKCRMPDEEKQLYKELEEADKIFYNANT 445
            M+GS +    P  +   +R AG  FLD  C+A+ SL    D  GI  SRIFAYDG  AAILV E   RIFCQQVS GLYDLG+S+  R DW+D L  +A  ++L   S E++ G  P        +   P W+SVV+M+P RV+++QRCAD  T+G++ HY       R     +    Q+++QDAFVIFGTHS   +R  QH+ AL  G +  S+    +    A+ P R KKDPNRPRGY+SAFNFFVKDKR  Y+     AQG+S  +NNE+NK LG+ WK  T +EK  Y+ ++  DK RYLKE++ Y PP G  RI PRI+       +    D I  T      RP PAYTHF +QE IGV SS+SN AK++MSK FGQRW G                     MP EE +LYKELE ADK  Y    
Sbjct:    1 MEGSFRDDGPPVDLFDGVRNAGLLFLDLGCEALASLSAANDLHGIDRSRIFAYDGVHAAILVTEGRRRIFCQQVSCGLYDLGVSINSRSDWRDAL--SATVTSLIMGSTESIAGGAPCGLNSRSEWFSSPAWSSVVHMAPSRVAVHQRCADEATEGLSVHYFRTMVEDRHLGLSSIHDRQDNVQDAFVIFGTHSRHPVRFRQHTGALGHGRSRYSKPQTRVAYESATAPKRHKKDPNRPRGYISAFNFFVKDKRPTYVQSRPNAQGHSLEHNNEINKMLGKVWKTATEQEKKTYEEKATADKVRYLKEMSAYRPPEGYERIAPRINVPKGFSTVSWDPDVIAGTTAQPCRRPWPAYTHFAHQEKIGVLSSRSNRAKTLMSKAFGQRWHG---------------------MPYEETELYKELEGADKERYEKEA 411          
BLAST of mRNA_P-lacustris_contig957.15934.1 vs. uniprot
Match: A0A2Z4MT98_SACJA (HMG-box containing protein isoform 2 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4MT98_SACJA)

HSP 1 Score: 107 bits (266), Expect = 8.570e-23
Identity = 67/152 (44.08%), Postives = 86/152 (56.58%), Query Frame = 0
Query:   28 MQGSSKCRVLPGGVAKMIREAGCSFLDSTCDAVQSLFGMKDFGGIKASRIFAYDGRRAAILVIENNTRIFCQQVSTGLYDLGLSMEPRPDWQDILELAALSSALEDNSREAVGGMEPL-------FKPPPLWASVVNMSPCRVSIYQRCADG 172
            M+GS +    P  +   +R AG  FLD  C+A+ SL    D  GI  SRIFAYDG  AAILV E   RIFCQQVS GLYDLG+S+  R DW+D L  +A  ++L   S E++ G  P        +   P W+SVV+M+P R     R  +G
Sbjct:    1 MEGSFRDDGPPVDLFDGVRNAGLLFLDLGCEALASLSAANDLHGIDRSRIFAYDGVHAAILVTEGRRRIFCQQVSCGLYDLGVSINSRSDWRDAL--SATVTSLIMGSTESIAGGAPCGLNSRSEWFSSPAWSSVVHMAPSREMSAYRPPEG 150          
BLAST of mRNA_P-lacustris_contig957.15934.1 vs. uniprot
Match: A0A6P8IS26_ACTTE (high mobility group protein B1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IS26_ACTTE)

HSP 1 Score: 70.1 bits (170), Expect = 2.600e-10
Identity = 52/202 (25.74%), Postives = 88/202 (43.56%), Query Frame = 0
Query:  248 PTRRKKDPNRPRGYVSAFNFFVKDKRSAYLLEAQGYSPGNNNEVNKRLGQAWKELTAEEKYFYQARSDDDKCRYLKEVAEYTPPAGGSRIHPRIHPVHRGVKLKGGADSIRETGRPSP---AYTHFTNQETIGVRSSKSNAAKSVMSKTFGQRWSGGRHFARISDEEKSSNSDKKCRMPDEEKQLYKELEEADKIFYNANTK 446
            P   KKDPN+P+G  SA+NFF++D++     E     P    E ++     WK ++ EEK  Y  +++ DK RYLKE++ Y+PP        +     +          I++  +P     AY  F   +   V+ S  + + + + K  G+ WS                     + P+ +K  Y+EL + D+  Y+   K
Sbjct:    2 PKVSKKDPNKPKGAKSAYNFFLQDQKEHMKGENGESLP--LQEFSRSCADKWKNMSGEEKKPYTDKAEKDKTRYLKEMSSYSPPPAEXXXXGKXMXXKK----------IKDPNKPKKNLSAYMFFLADKRPSVKESLGDVSTTAVLKALGEMWS---------------------KTPESDKGEYQELAKKDRQRYDEEMK 170          
BLAST of mRNA_P-lacustris_contig957.15934.1 vs. uniprot
Match: A0A6J2WHH4_CHACN (high mobility group protein B2 isoform X1 n=4 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2WHH4_CHACN)

HSP 1 Score: 68.2 bits (165), Expect = 1.590e-9
Identity = 44/147 (29.93%), Postives = 70/147 (47.62%), Query Frame = 0
Query:  253 KDPNRPRGYVSAFNFFVKDKRSAYLLEAQGYSPGNNNEVNKRLGQAWKELTAEEKYFYQARSDDDKCRYLKEVAEYTPPAGGSRIHPRIHPVHRGVKLKGGADSIRETGRPSPAYTHFTNQETIGVRSSKSNAAKSVMSKTFGQRWS 399
            KDPN+PRG +S++ FFV+D R  +  +  G S  N  E +K+  + WK L+  EK  Y+  + +DK RY +E+  Y PP G  +   +  P                  RP  A+  F + +   V+S     +   ++K  G+ WS
Sbjct:    3 KDPNKPRGKMSSYAFFVQDCREKHKSKNPGTSV-NFAEFSKKCSERWKALSGSEKGKYEEMARNDKVRYDREMKSYVPPKGAKKGKKKKDP--------------NAPKRPPSAFFIFCSDKRPDVKSKNPGISIGDVAKKLGELWS 134          
BLAST of mRNA_P-lacustris_contig957.15934.1 vs. uniprot
Match: UPI0009E2B95D (high mobility group protein B2-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2B95D)

HSP 1 Score: 66.6 bits (161), Expect = 4.370e-9
Identity = 47/209 (22.49%), Postives = 97/209 (46.41%), Query Frame = 0
Query:  251 RKKDPNRPRGYVSAFNFFVKDKRSAYLLEAQGYSPGNNNEVNKRL-------------GQAWKELTAEEKYFYQARSDDDKCRYLKEVAEYTPPAGGSRIHPRIHPVHRGVKLKGGADSIRETGRPSPAYTHFTNQETIGVRSSKSNAAKSVMSKTFGQRWSGGRHFARISDEEKSSNSDKKCRMPDEEKQLYKELEEADKIFYNANTK 446
            ++KDPN+P+G +SA+N FV+++R A + +++  +P N+ E+ ++               + WK+L+ EE+  ++  ++ DK RY  E+A YTPP    +         +  K+K       E  R   ++  F+    I  +  + N   +V +K  G+ W                      +M +++K+ Y+++ + D+  Y+   +
Sbjct:    3 KRKDPNKPKGKLSAYNCFVREEREA-MKKSEAEAPANDAEIQEKTPGTMAQQVFMVACAEKWKKLSEEERQRFKEAAEKDKIRYENEMANYTPP----KTEASGRKTRKEKKMK----DPNEPKRVVSSFMFFSKD--IRAKMKEENPQTAVSAKVLGEMW---------------------AKMEEKQKEKYEQMAKEDRERYHEEMR 179          
BLAST of mRNA_P-lacustris_contig957.15934.1 vs. uniprot
Match: A0A7J6V6Z4_THATH (High mobility group b protein n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6V6Z4_THATH)

HSP 1 Score: 66.6 bits (161), Expect = 1.800e-8
Identity = 37/90 (41.11%), Postives = 49/90 (54.44%), Query Frame = 0
Query:  239 AMIPNKASPPTRRKKDPNRPRGYVSAFNFFVKDKRSAYLLEAQGYSPGNNNEVNKRLGQAWKELTAEEKYFYQARSDDDKCRYLKEVAEY 328
            A + N+     +R +DP RP+ Y SA+NFF  DKRS    E +   P    +  K +G+AW  LT EEK  YQ     DK RY KE+ +Y
Sbjct:  211 ASLSNRTKKKRQRLEDPARPKRYRSAYNFFFSDKRS----ELKTLCPHRERDFTKMIGEAWNNLTGEEKKVYQEIGTRDKERYQKELIDY 296          
BLAST of mRNA_P-lacustris_contig957.15934.1 vs. uniprot
Match: A0A250WZK2_9CHLO (FACT complex subunit SSRP1 n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WZK2_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 4.820e-8
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 0
Query:  250 RRKKDPNRPRGYVSAFNFFVKDKRSAYLLEAQGYSPGNNNEVNKRLGQAWKELTAEEKYFYQARSDDDKCRYLKEVAEYTPPAGGS 335
            R+KKDPN P+G +SAF +F  + RS    E  G + G   EV K LG+ WK  TA+EK  ++  ++ DK RY +++AEY    G +
Sbjct:  571 RKKKDPNAPKGALSAFMYFSNEMRSKVKEENPGIAFG---EVGKLLGERWKAATADEKAKFEQMAEKDKDRYKQQMAEYKAKGGAA 653          
BLAST of mRNA_P-lacustris_contig957.15934.1 vs. uniprot
Match: A0A3M6UQ67_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UQ67_POCDA)

HSP 1 Score: 62.8 bits (151), Expect = 8.710e-8
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 0
Query:  252 KKDPNRPRGYVSAFNFFVKDKRSAYLLEAQGYSPGNNNEV--NKRLGQA--------WKELTAEEKYFYQARSDDDKCRYLKEVAEYTPP 331
            +KDPN+PRG +SA+N FVK++  A + + Q  + G+++E   +K + QA        WK+LT EEK  +   ++ D+ RY  E+A YTPP
Sbjct:    4 RKDPNKPRGKMSAYNIFVKEETEA-MKKLQSEATGDSSETKEDKAVRQAFIPACAEKWKKLTEEEKKRFVEAAEKDRMRYNNEMANYTPP 92          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig957.15934.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSJ1_9PHAE5.230e-21269.04HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G5V4_ECTSI1.980e-12565.33HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A2Z4MTA2_SACJA1.670e-10345.62HMG-box containing protein isoform 1 n=1 Tax=Sacch... [more]
A0A2Z4MT98_SACJA8.570e-2344.08HMG-box containing protein isoform 2 n=1 Tax=Sacch... [more]
A0A6P8IS26_ACTTE2.600e-1025.74high mobility group protein B1-like n=1 Tax=Actini... [more]
A0A6J2WHH4_CHACN1.590e-929.93high mobility group protein B2 isoform X1 n=4 Tax=... [more]
UPI0009E2B95D4.370e-922.49high mobility group protein B2-like n=1 Tax=Orbice... [more]
A0A7J6V6Z4_THATH1.800e-841.11High mobility group b protein n=1 Tax=Thalictrum t... [more]
A0A250WZK2_9CHLO4.820e-841.86FACT complex subunit SSRP1 n=1 Tax=Chlamydomonas e... [more]
A0A3M6UQ67_POCDA8.710e-840.00Uncharacterized protein n=1 Tax=Pocillopora damico... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 257..330
e-value: 3.8E-14
score: 63.0
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 262..328
e-value: 1.1E-11
score: 45.0
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 258..329
score: 13.987
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 242..330
e-value: 1.4E-17
score: 65.7
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 249..330
NoneNo IPR availablePANTHERPTHR13711:SF302HIGH MOBILITY GROUP PROTEIN DSP1-RELATEDcoord: 243..329
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 243..329

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig957contigP-lacustris_contig957:21016..61146 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig957.15934.1mRNA_P-lacustris_contig957.15934.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig957 21016..61146 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig957.15934.1 ID=prot_P-lacustris_contig957.15934.1|Name=mRNA_P-lacustris_contig957.15934.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=447bp
LPALRNSEPSGTTHWVGVSSCRRRAWVMQGSSKCRVLPGGVAKMIREAGC
SFLDSTCDAVQSLFGMKDFGGIKASRIFAYDGRRAAILVIENNTRIFCQQ
VSTGLYDLGLSMEPRPDWQDILELAALSSALEDNSREAVGGMEPLFKPPP
LWASVVNMSPCRVSIYQRCADGTTDGVAFHYSVATRSGRVDSTRTQGKHQ
ESIQDAFVIFGTHSAGSMRLEQHSRALTSGNTGSSELHAMIPNKASPPTR
RKKDPNRPRGYVSAFNFFVKDKRSAYLLEAQGYSPGNNNEVNKRLGQAWK
ELTAEEKYFYQARSDDDKCRYLKEVAEYTPPAGGSRIHPRIHPVHRGVKL
KGGADSIRETGRPSPAYTHFTNQETIGVRSSKSNAAKSVMSKTFGQRWSG
GRHFARISDEEKSSNSDKKCRMPDEEKQLYKELEEADKIFYNANTK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf