prot_P-lacustris_contig945.15844.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-lacustris_contig945.15844.1
Unique Name	prot_P-lacustris_contig945.15844.1
Type	polypeptide
Organism	Pleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length	220

Homology

[Close]

BLAST of mRNA_P-lacustris_contig945.15844.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 5.590e-122
Identity = 187/218 (85.78%), Postives = 198/218 (90.83%), Query Frame = 0

Query:    4 SQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSS-LKMSAGSDYVATLPGA-LPNGKIFDPLGLSDGAELGDIKLWREAEIKHGRVAMLAALGVLVAEEYHPFFMGPDYIGPAVDHFQEISAKFPEFWVFSLLGMAFIEYNTITKAYAQPSPVTGEGGLKDDYSPGDLGFDPLNLKPKTAEALATMQTKELNNGRLAMIGIAGMLVQELVKPENILG 219
            S MFLGTAATLIASSTAFVAPMA VRS APASS+S LKMSAGSDYVATLPGA   +GKIFDPL LSDGAE G+IKLWREAEIKHGRVAMLA +GV+VAE+YHP FMGPDYIGPAVDHFQEISA+FPEFW FSLLGMAFIEYNTITKAYA+PSPVTGEGGL+D+YSPGDLGFDPLNLKPK    L  MQTKELNNGRLAMIGIAGMLVQELV P +ILG
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMA-VRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221

[Close]

BLAST of mRNA_P-lacustris_contig945.15844.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 5.730e-117
Identity = 182/221 (82.35%), Postives = 197/221 (89.14%), Query Frame = 0

Query:    1 MVASQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSS-LKMSAGSDYVATLPGA-LPNGKIFDPLGLSDGAELGDIKLWREAEIKHGRVAMLAALGVLVAEEYHPFFMGPDYIGPAVDHFQEISAKFPEFWVFSLLGMAFIEYNTITKAYAQPSPVTGEGGLKDDYSPGDLGFDPLNLKPKTAEALATMQTKELNNGRLAMIGIAGMLVQELVKPENILG 219
            MVA+Q+FLG+AATLIASSTAFVAPMA VRS APASSSS LKMSAGSDYVATLPGA   +GKIFDPL LSDGA+  DIK WREAEIKHGRVAMLA+LGVLVAE+YHP FMGPDYIGPAVDHFQEISA++PEFWVFSLLGMAFIEYNTI  A+  PS VTGEGGLK+DY PGDLGFDPLNLKP+   AL  M+TKELNNGRLAMIGIAGMLVQEL+ P +ILG
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMA-VRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220

[Close]

BLAST of mRNA_P-lacustris_contig945.15844.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 331 bits (848), Expect = 4.870e-113
Identity = 173/217 (79.72%), Postives = 191/217 (88.02%), Query Frame = 0

Query:    4 SQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSS-LKMSAGSDYVATLPGALPNGKIFDPLGLSDGAELGDIKLWREAEIKHGRVAMLAALGVLVAEEYHPFFMGPDYIGPAVDHFQEISAKFPEFWVFSLLGMAFIEYNTITKAYAQPSPVTGEGGLKDDYSPGDLGFDPLNLKPKTAEALATMQTKELNNGRLAMIGIAGMLVQELVKPENILG 219
            S MFLGTAATLIASS AFV PMA VRS APASS+S LKMSAG+DY+ATLPGA  NGKIFD L L+DGA+ G+IKLWREAEIKHGRVAMLA +GV+VAE+YHPFFMGPDYIGPAVDHFQEI+AKFP+FW +SLLGMAFIEYNTI KAYA+PSPVTGEGGL+D+YSPGDLGFDP  +KPK    L  MQ KELNNGRLAMIGI GMLVQELV  ++ILG
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMA-VRSAAPASSASALKMSAGTDYLATLPGA--NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218

[Close]

BLAST of mRNA_P-lacustris_contig945.15844.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 1.150e-110
Identity = 176/220 (80.00%), Postives = 190/220 (86.36%), Query Frame = 0

Query:    1 MVASQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSS-LKMSAGSDYVATLPGA-LPNGKIFDPLGLSDGAELGDIKLWREAEIKHGRVAMLAALGVLVAEEYHPFFMGPDYIGPAVDHFQEISAKFPEFWVFSLLGMAFIEYNTITKAYAQPSPVTGEGGLKDDYSPGDLGFDPLNLKPKTAEALATMQTKELNNGRLAMIGIAGMLVQELVKPENIL 218
            MVASQMFLGTAA LIASSTAFVAP+A VRS APAS++S LKMSAGSDYVATLPGA   +GKIFDPL LSDGA  GDIK WREAEIKHGRVAMLA+LG+LVAEEYHP FMG D+IGPA+ HFQEISA+FPEFW FSLLGMAFIEYNTI  A+  PS VTGEGGLK+DY PGDLGFDPLNLKP    AL  M+TKELNNGRLAMIGIAGML QELV  ++IL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVA-VRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

[Close]

BLAST of mRNA_P-lacustris_contig945.15844.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 2.380e-97
Identity = 140/160 (87.50%), Postives = 148/160 (92.50%), Query Frame = 0

Query:   59 KIFDPLGLSDGAELGDIKLWREAEIKHGRVAMLAALGVLVAEEYHPFFMGPDYIGPAVDHFQEISAKFPEFWVFSLLGMAFIEYNTITKAYAQPSPVTGEGGLKDDYSPGDLGFDPLNLKPKTAEALATMQTKELNNGRLAMIGIAGMLVQELVKPENIL 218
            KIFDPLGL+DGAE+GDIKLWREAEIKHGRVAMLA+LGVLVAEEYHPFFMGPDYIGPAVDHFQEISA+FPEFW FSLL +A IEYNTITKAYA+PS VTGEGGL+D+YSPGDLGFDPLNLKP    AL TMQTKELNNGRLAMIGIAG LVQELV P NIL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174

[Close]

BLAST of mRNA_P-lacustris_contig945.15844.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 7.660e-91
Identity = 132/161 (81.99%), Postives = 142/161 (88.20%), Query Frame = 0

Query:   59 KIFDPLGLSDGAELGDIKLWREAEIKHGRVAMLAALGVLVAEEYHPFFMGPDYIGPAVDHFQEISAKFPEFWVFSLLGMAFIEYNTITKAYAQPSPVTGEGGLKDDYSPGDLGFDPLNLKPKTAEALATMQTKELNNGRLAMIGIAGMLVQELVKPENILG 219
            +IFDPLGLSDGA  GDIK WREAEIKHGRVAMLA+LGV+VAE+YHPFFMGPDYIGPAVDHFQEISA+FPEFW FSLLGMAF+EYNTI  A+  PS VTGEGGLK+DY PGDLGFDPLNLKP    AL  M+TKELNNGRLAMIGIAGML QELV P +ILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196

[Close]

BLAST of mRNA_P-lacustris_contig945.15844.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 2.160e-88
Identity = 133/161 (82.61%), Postives = 142/161 (88.20%), Query Frame = 0

Query:   59 KIFDPLGLSDGAELGDIKLWREAEIKHGRVAMLAALGVLVAEEYHPFFMGPDYIGPAVDHFQEISAKFPEFWVFSLLGMAFIEYNTITKAYAQPSPVTGEGGLKDDYSPGDLGFDPLNLKPKTAEALATMQTKELNNGRLAMIGIAGMLVQELVKPENILG 219
            +IFDPLGLSDGA  GDIK WREAEIKHGRVAMLA+LGV+VAE+YHPFFMGPDYIGPAVDHFQEISA+FPEFW FSLLGMAFIEYNTI  A+  PS VTGEGGLK+DY PGDLGFDPLNLKP    AL  M+TKELNNGRLAMIGIAGML QELV P +ILG
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392

[Close]

BLAST of mRNA_P-lacustris_contig945.15844.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 1.480e-87
Identity = 156/221 (70.59%), Postives = 164/221 (74.21%), Query Frame = 0

Query:    1 MVASQMFLGTAATLIASSTAFVAPMAAVRSVAPASSS-SLKMSAGSDYVATLPGA-LPNGKIFDPLGLSDGAELGDIKLWREAEIKHGRVAMLAALGVLVAEEYHPFFMGPDYIGPAVDHFQEISAKFPEFWVFSLLGMAFIEYNTITKAYAQPSPVTGEGGLKDDYSPGDLGFDPLNLKPKTAEALATMQTKELNNGRLAMIGIAGMLVQELVKPENILG 219
            MVASQMF+GTAATLIASSTAFVAPMA VRSV    SS  LKMSAGSDYVATLPGA   +GKIFDPLGLSDGA  GDIK WREAEIKHGRVAMLA+LGV+VAE                            FW FSLLGMAFIEYNTI  A+  PS VTGEGGLK+DY PGDLGFDPLNLKP    AL  M+TKELNNGRLAMIGIAGML QELV P +ILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMA-VRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192

[Close]

BLAST of mRNA_P-lacustris_contig945.15844.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 3.440e-80
Identity = 127/212 (59.91%), Postives = 161/212 (75.94%), Query Frame = 0

Query:    9 GTAATLIASSTAFVAPMAAVRSVAPASSSSLKMSAGSDYVATLPGA-LPNGKIFDPLGLSDGAELGDIKLWREAEIKHGRVAMLAALGVLVAEEYHPFFMGPDYIGPAVDHFQEISAKFPEFWVFSLLGMAFIEYNTITKAYAQPSPVTGEGGLKDDYSPGDLGFDPLNLKPKTAEALATMQTKELNNGRLAMIGIAGMLVQELVKPENILG 219
            G A+   AS  AF+ P     S  P S+++ +MSAGSDYV+TLPGA   +GK++DP+GLS  A+  DIK WREAEIKHGRVAMLA++GVLVAE +HP F+GPDYIGPA+ HF+EI+A+FP+FW  +LL +A++EY  I   +A+  PVTGEGG++ DY PGDLGFDPL L P+    L  M+TKELN+GRLAMIGI GM+VQELV+P  I G
Sbjct:   61 GMASWCFASCEAFIVPTPTTLSARPTSTAA-RMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271

[Close]

BLAST of mRNA_P-lacustris_contig945.15844.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 4.100e-77
Identity = 134/224 (59.82%), Postives = 163/224 (72.77%), Query Frame = 0

Query:    1 MVASQMFLGTAATLIASSTAFVAPMAAVRS--VAPASSSSLKMSAGSDYVATLPGA----LPNGKIFDPLGLSDGAELGDIKLWREAEIKHGRVAMLAALGVLVAEEYHPFFMGPDYIGPAVDHFQEISAKFPEFWVFSLLGMAFIEYNTITKAYAQPSPVTGEGGLKDDYSPGDLGFDPLNLKPKTAEALATMQTKELNNGRLAMIGIAGMLVQELVKPENIL 218
            MV SQ+FLGTAATLIASS AFVAP+AA RS     A+SS+ KM+AGSDY A+LPGA       GK FDP GL+   +   IK WREAE+KHGRV+MLAA+G+LV+E +HP FMGP YIGPAV+H Q+I+  +P FWV SL  +AFIE  TI  A+   SPVTG G LK +Y PGDLGFDPL L PK  E    +Q++EL+ GR AMIG+ GM+VQE+V  + IL
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224

The following BLAST results are available for this feature:

BLAST of mRNA_P-lacustris_contig945.15844.1 vs. uniprot

BLAST of mRNA_P-lacustris_contig945.15844.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7S1_ECTSI	5.590e-122	85.78	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q6_ECTSI	5.730e-117	82.35	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	4.870e-113	79.72	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	1.150e-110	80.00	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q7_ECTSI	2.380e-97	87.50	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	7.660e-91	81.99	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	2.160e-88	82.61	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5K8D0_9PHAE	1.480e-87	70.59	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
D7G5B4_ECTSI	3.440e-80	59.91	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7FQG7_ECTSI	4.100e-77	59.82	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 37..219 e-value: 9.0E-39 score: 135.1
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 49..210 e-value: 2.1E-38 score: 132.4
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 10..213
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..36
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..36
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 37..219
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..20 score: 0.542
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 49..218
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 10..213

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-lacustris_contig945	contig	P-lacustris_contig945:57080..61615 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_93	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-lacustris_contig945.15844.1	mRNA_P-lacustris_contig945.15844.1	Pleurocladia lacustris SAG_25_93	mRNA	P-lacustris_contig945 57080..61615 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-lacustris_contig945.15844.1 ID=prot_P-lacustris_contig945.15844.1|Name=mRNA_P-lacustris_contig945.15844.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=220bp
MVASQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSSLKMSAGSDYVAT
LPGALPNGKIFDPLGLSDGAELGDIKLWREAEIKHGRVAMLAALGVLVAE
EYHPFFMGPDYIGPAVDHFQEISAKFPEFWVFSLLGMAFIEYNTITKAYA
QPSPVTGEGGLKDDYSPGDLGFDPLNLKPKTAEALATMQTKELNNGRLAM
IGIAGMLVQELVKPENILG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln