prot_P-lacustris_contig938.15789.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig938.15789.1
Unique Nameprot_P-lacustris_contig938.15789.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length460
Homology
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BLAST of mRNA_P-lacustris_contig938.15789.1 vs. uniprot
Match: D8LHR0_ECTSI (C-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR0_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.910e-7
Identity = 118/400 (29.50%), Postives = 158/400 (39.50%), Query Frame = 0 
Query:  104 AEGASSDFEGWLRKSGDLWSGTSVTEVEGEVVELPLIVAGTSGAD----TEGDDSGGGLS-PLLIGGISAGVVVVXXXXLVVLCRLKKADKTNNPKPARRAPRSQGRRRVDYGPGTGNNSGQQRQXXXXXXXXXXRLQFSGGFGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRALDN----AGSDTSESVSIQNSGTRRVMASKQSSK----------------------------------MSFASYDTT---------ETKRPTVRGPSGALHGLGLGRAVSSDQFSDYVRETPRGDGDGREAFSGGGGGVIPFESGEGTDEAGSRYYTE---VSLSSLGSGRRSEGLASRGSTAEERIRELHDREQAKKSSVTLERHIPPCAVSPG 448
            A+G+ +D + WL +SG  W+  SV  +E EVVE   ++   S  D    +EG + GG L  PL+IGGI+AG VVV    ++ LC  +KA+K ++ +                   T      +R           R+  S           XXXXX                   XXXXXXX           GS  S S S   +       S Q S                                    SFA+ +++         ETKRP+VRGPSGAL  LG  R  S D F +   E   G         GG          +G  EAGSRY       S S++GS R++E   S+ STA  RI+EL DR++ K + VT +   P    SPG
Sbjct:  658 ADGSDNDLQSWLWESGGSWTEVSVPTLEVEVVEELNVLTSDSSGDASDASEGAEEGGDLDDPLIIGGIAAGAVVVVGLVMLALCCSRKANKKSDTRAXXXXXXXXXXXXXXXXXXTPRV---RRNWFCGTQTTTTRIFLSTAVDPSVAAWGXXXXXGLRWRALLQRVALPRRARSXXXXXXXXXXXXXXXXPVGSQRSNSASPPVATVDTASLSAQDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSFAANNSSLAVRDAENLETKRPSVRGPSGALASLGFARGCSLDVFEE---ENTAGGNPSERVEDGG-------SMYDGGSEAGSRYTPSRPAASGSAVGSARQAEVFGSQYSTAGARIQELRDRQRVKATPVTFQ--APMSMPSPG 1042
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig938.15789.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHR0_ECTSI1.910e-729.50C-type lectin domain-containing protein n=1 Tax=Ec... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..160
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 185..459
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 161..184
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableTMHMMTMhelixcoord: 160..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig938contigP-lacustris_contig938:73694..78284 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig938.15789.1mRNA_P-lacustris_contig938.15789.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig938 73617..78284 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig938.15789.1 ID=prot_P-lacustris_contig938.15789.1|Name=mRNA_P-lacustris_contig938.15789.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=460bp
MGLEKALNNACAFSLSVVSARFLASVLSRGCFSLPYVKTSQRLSSSVYHL
SSTWHAATYARGCCGEAHHALFICPLGITAKNLDRSTPHPFLPARLLLSL
SLSAEGASSDFEGWLRKSGDLWSGTSVTEVEGEVVELPLIVAGTSGADTE
GDDSGGGLSPLLIGGISAGVVVVAAVVLVVLCRLKKADKTNNPKPARRAP
RSQGRRRVDYGPGTGNNSGQQRQQDLDDDREDERLQFSGGFGDSSKSKKK
GAAVGGAGDSKEGGDEHDDQRVECAASSSSRRALDNAGSDTSESVSIQNS
GTRRVMASKQSSKMSFASYDTTETKRPTVRGPSGALHGLGLGRAVSSDQF
SDYVRETPRGDGDGREAFSGGGGGVIPFESGEGTDEAGSRYYTEVSLSSL
GSGRRSEGLASRGSTAEERIRELHDREQAKKSSVTLERHIPPCAVSPGET
SSLGGSIPW*
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