prot_P-lacustris_contig933.15746.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig933.15746.1
Unique Nameprot_P-lacustris_contig933.15746.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length250
Homology
[Close]
BLAST of mRNA_P-lacustris_contig933.15746.1 vs. uniprot
Match: D8LKN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN9_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 1.210e-53
Identity = 112/244 (45.90%), Postives = 156/244 (63.93%), Query Frame = 0 
Query:    2 LQALYSISIPIGCRVSTNIIEVWMATLPLQLLPADSMTVNMITLAQKWNILVWNGRLGALGMMTLGLLTFFTLDIITVVRTVNLASAIVGVSTLLAISLVGFNITGMIEKTKTNARTSASAFYGQAVRALWTQVAALIIAAAVWMTSIVTLEPLLGGVGVDTPEIPLSVMVLDSFVIFSMAVHFVKVGPARVSKSAHPTTQ-GIQIQTVASPRGGAGGLLSELGSKSAGVKSLRATVGKMHVVP 244
            L+AL SI+ P+ C    ++I++W+ TLP QL+PADS+ + +I LA+K N+ +W G L   G+   GLLTFF LD+I VVR VNL          +  + VG N+T +I   K NA  S+ AFY QA+  L  QV AL +A  VW+  +V LEP LGGVG  TP IP ++M+LD+FV FS+AVHF K+GP    +S +P  Q G Q+ + ASP GGA  +LS++G+K++ V S+ A   +  VVP
Sbjct:  126 LKALCSITFPLVCMAVAHMIDLWINTLPTQLVPADSVAIKVIKLAEKKNLCLWVGWLAIAGLTPFGLLTFFVLDVIKVVRAVNLV---------ICFNFVGVNLTKIINGAKRNAGPSSIAFYEQAIHTLRIQVFALTVAGVVWIVMVVALEPYLGGVGARTPVIPFTIMLLDAFVGFSLAVHFAKIGPTS-RQSFNPLNQLGTQMNSAASPWGGARAILSDVGAKASEVMSMLAAPTEKRVVP 359
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig933.15746.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKN9_ECTSI1.210e-5345.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..57
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 85..106
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 147..165
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 127..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..79
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 107..126
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 80..84
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 166..186
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 187..249
NoneNo IPR availableTMHMMTMhelixcoord: 127..149
NoneNo IPR availableTMHMMTMhelixcoord: 58..80
NoneNo IPR availableTMHMMTMhelixcoord: 164..186
NoneNo IPR availableTMHMMTMhelixcoord: 85..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig933contigP-lacustris_contig933:3825..6655 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig933.15746.1mRNA_P-lacustris_contig933.15746.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig933 551..7258 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig933.15746.1 ID=prot_P-lacustris_contig933.15746.1|Name=mRNA_P-lacustris_contig933.15746.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=250bp
MLQALYSISIPIGCRVSTNIIEVWMATLPLQLLPADSMTVNMITLAQKWN
ILVWNGRLGALGMMTLGLLTFFTLDIITVVRTVNLASAIVGVSTLLAISL
VGFNITGMIEKTKTNARTSASAFYGQAVRALWTQVAALIIAAAVWMTSIV
TLEPLLGGVGVDTPEIPLSVMVLDSFVIFSMAVHFVKVGPARVSKSAHPT
TQGIQIQTVASPRGGAGGLLSELGSKSAGVKSLRATVGKMHVVPTIEDG*
back to top